Nematode and Arthropod Genomes Provide New Insights into the Evolution of Class 2 B1 GPCRs

Detalhes bibliográficos
Autor(a) principal: Cardoso, João CR
Data de Publicação: 2014
Outros Autores: Félix, Rute C., Power, Deborah
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10400.1/5417
Resumo: Nematodes and arthropods are the most speciose animal groups and possess Class 2 B1 G-protein coupled receptors (GPCRs). Existing models of invertebrate Class 2 B1 GPCR evolution are mainly centered on Caenorhabditis elegans and Drosophila melanogaster and a few other nematode and arthropod representatives. The present study reevaluates the evolution of metazoan Class 2 B1 GPCRs and orthologues by exploring the receptors in several nematode and arthropod genomes and comparing them to the human receptors. Three novel receptor phylogenetic clusters were identified and designated cluster A, cluster B and PDF-R-related cluster. Clusters A and B were identified in several nematode and arthropod genomes but were absent from D. melanogaster and Culicidae genomes, whereas the majority of the members of the PDF-R-related cluster were from nematodes. Cluster A receptors were nematode and arthropod-specific but shared a conserved gene environment with human receptor loci. Cluster B members were orthologous to human GCGR, PTHR and Secretin members with which they probably shared a common origin. PDF-R and PDF-R related clusters were present in representatives of both nematodes and arthropods. The results of comparative analysis of GPCR evolution and diversity in protostomes confirm previous notions that C. elegans and D. melanogaster genomes are not good representatives of nematode and arthropod phyla. We hypothesize that at least four ancestral Class 2 B1 genes emerged early in the metazoan radiation, which after the protostome-deuterostome split underwent distinct selective pressures that resulted in duplication and deletion events that originated the current Class 2 B1 GPCRs in nematode and arthropod genomes.
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spelling Nematode and Arthropod Genomes Provide New Insights into the Evolution of Class 2 B1 GPCRsArthropodaCaenorhabditis elegansChromosomesEvolutionary geneticsNematodes and arthropods are the most speciose animal groups and possess Class 2 B1 G-protein coupled receptors (GPCRs). Existing models of invertebrate Class 2 B1 GPCR evolution are mainly centered on Caenorhabditis elegans and Drosophila melanogaster and a few other nematode and arthropod representatives. The present study reevaluates the evolution of metazoan Class 2 B1 GPCRs and orthologues by exploring the receptors in several nematode and arthropod genomes and comparing them to the human receptors. Three novel receptor phylogenetic clusters were identified and designated cluster A, cluster B and PDF-R-related cluster. Clusters A and B were identified in several nematode and arthropod genomes but were absent from D. melanogaster and Culicidae genomes, whereas the majority of the members of the PDF-R-related cluster were from nematodes. Cluster A receptors were nematode and arthropod-specific but shared a conserved gene environment with human receptor loci. Cluster B members were orthologous to human GCGR, PTHR and Secretin members with which they probably shared a common origin. PDF-R and PDF-R related clusters were present in representatives of both nematodes and arthropods. The results of comparative analysis of GPCR evolution and diversity in protostomes confirm previous notions that C. elegans and D. melanogaster genomes are not good representatives of nematode and arthropod phyla. We hypothesize that at least four ancestral Class 2 B1 genes emerged early in the metazoan radiation, which after the protostome-deuterostome split underwent distinct selective pressures that resulted in duplication and deletion events that originated the current Class 2 B1 GPCRs in nematode and arthropod genomes.This work was supported by the Portuguese Foundation for Science and Technology (FCT) project PTDC/BIA-BCM/114395/2009, by the European Regional Development Fund through COMPETE and FCT under the project ‘‘PEst-C/MAR/LA0015/2011.’’ RCF is in receipt of an FCT grant (SFRH/BPD/89811/2012) and JCRC is supported by auxiliary research contract FCT Pluriannual funds attributed to CCMAR. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.Public Library of ScienceSapientiaCardoso, João CRFélix, Rute C.Power, Deborah2014-10-23T09:15:26Z2014-032014-03-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10400.1/5417engCardoso JCR, Fe´ lix RC, Power DM (2014) Nematode and Arthropod Genomes Provide New Insights into the Evolution of Class 2 B1 GPCRs. PLoS ONE 9(3): e92220. doi:10.1371/journal.pone.0092220AUT: DPO00386;http://dx.doi.org/ 10.1371/journal.pone.0092220info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-07-24T10:16:40Zoai:sapientia.ualg.pt:10400.1/5417Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T19:58:30.063717Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Nematode and Arthropod Genomes Provide New Insights into the Evolution of Class 2 B1 GPCRs
title Nematode and Arthropod Genomes Provide New Insights into the Evolution of Class 2 B1 GPCRs
spellingShingle Nematode and Arthropod Genomes Provide New Insights into the Evolution of Class 2 B1 GPCRs
Cardoso, João CR
Arthropoda
Caenorhabditis elegans
Chromosomes
Evolutionary genetics
title_short Nematode and Arthropod Genomes Provide New Insights into the Evolution of Class 2 B1 GPCRs
title_full Nematode and Arthropod Genomes Provide New Insights into the Evolution of Class 2 B1 GPCRs
title_fullStr Nematode and Arthropod Genomes Provide New Insights into the Evolution of Class 2 B1 GPCRs
title_full_unstemmed Nematode and Arthropod Genomes Provide New Insights into the Evolution of Class 2 B1 GPCRs
title_sort Nematode and Arthropod Genomes Provide New Insights into the Evolution of Class 2 B1 GPCRs
author Cardoso, João CR
author_facet Cardoso, João CR
Félix, Rute C.
Power, Deborah
author_role author
author2 Félix, Rute C.
Power, Deborah
author2_role author
author
dc.contributor.none.fl_str_mv Sapientia
dc.contributor.author.fl_str_mv Cardoso, João CR
Félix, Rute C.
Power, Deborah
dc.subject.por.fl_str_mv Arthropoda
Caenorhabditis elegans
Chromosomes
Evolutionary genetics
topic Arthropoda
Caenorhabditis elegans
Chromosomes
Evolutionary genetics
description Nematodes and arthropods are the most speciose animal groups and possess Class 2 B1 G-protein coupled receptors (GPCRs). Existing models of invertebrate Class 2 B1 GPCR evolution are mainly centered on Caenorhabditis elegans and Drosophila melanogaster and a few other nematode and arthropod representatives. The present study reevaluates the evolution of metazoan Class 2 B1 GPCRs and orthologues by exploring the receptors in several nematode and arthropod genomes and comparing them to the human receptors. Three novel receptor phylogenetic clusters were identified and designated cluster A, cluster B and PDF-R-related cluster. Clusters A and B were identified in several nematode and arthropod genomes but were absent from D. melanogaster and Culicidae genomes, whereas the majority of the members of the PDF-R-related cluster were from nematodes. Cluster A receptors were nematode and arthropod-specific but shared a conserved gene environment with human receptor loci. Cluster B members were orthologous to human GCGR, PTHR and Secretin members with which they probably shared a common origin. PDF-R and PDF-R related clusters were present in representatives of both nematodes and arthropods. The results of comparative analysis of GPCR evolution and diversity in protostomes confirm previous notions that C. elegans and D. melanogaster genomes are not good representatives of nematode and arthropod phyla. We hypothesize that at least four ancestral Class 2 B1 genes emerged early in the metazoan radiation, which after the protostome-deuterostome split underwent distinct selective pressures that resulted in duplication and deletion events that originated the current Class 2 B1 GPCRs in nematode and arthropod genomes.
publishDate 2014
dc.date.none.fl_str_mv 2014-10-23T09:15:26Z
2014-03
2014-03-01T00:00:00Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10400.1/5417
url http://hdl.handle.net/10400.1/5417
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Cardoso JCR, Fe´ lix RC, Power DM (2014) Nematode and Arthropod Genomes Provide New Insights into the Evolution of Class 2 B1 GPCRs. PLoS ONE 9(3): e92220. doi:10.1371/journal.pone.0092220
AUT: DPO00386;
http://dx.doi.org/ 10.1371/journal.pone.0092220
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Public Library of Science
publisher.none.fl_str_mv Public Library of Science
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