Analysis of metabolic pathways of Saccharomyces cerevisiae in alcoholic fermentation to mitigate glucose rise in grapes due to global warming effects

Detalhes bibliográficos
Autor(a) principal: Magalhães, João Pedro Zamith Piedade Ribeiro
Data de Publicação: 2021
Tipo de documento: Dissertação
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10348/10997
Resumo: In the modern era, due to human activity and consequent pollution, Earth’s climate has been severely impacted. A direct consequence of this change is Global Warming, the gradual heating of the planet’s surface, oceans, and atmosphere. This rise in temperature impacts all the biosphere, including humans, animals, and crops. One of these crops, the grape, is responsible for one of the world’s most renowned alcoholic beverages: wine. This alcoholic drink has accompanied the human species from ancient times until now, representing today, a gigantic industry worth billions of dollars. In recent years this industry came across some new challenges caused by Global Warming, namely, the higher concentration of glucose in grapes and the consequent rise of ethanol concentrations in wine. The negative consequences presented by this new challenge are vast, ranging from damages to the sensory profile of the wines, public health concerns, and higher taxation of wine products. The present dissertation tackles this emerging problem through Systems Biology and Metabolic Engineering approaches to study strategies that mitigate these changes by manipulating yeast metabolism. The pipeline of this study involves the identification and simulation of low-ethanol metabolic engineering strategies. This framework allowed us to simulate genetic and environmental conditions and analyze the impact of each strategy in the yeast’s metabolism. The results obtained showed that the most promising yeast strains to fit the needs of winemaking were the GPD1 and HC23 approaches. These results showed compliance with the literature in several parameters ensuring the reliability of the simulation and finding a strong similarity between the experimental bibliographic data and the in silico simulation results. These results corroborated with the scientific data regarding biomass values, ethanol production and glycerol yield. The results obtained in this work sustain the hypothesis that these methods can be a great advantage to the wine industry. Not only making the process more effective but possibly giving the wine healthier properties and a more predictable sensory profile. It is possible to say that systems and synthetic biology-based strategies like the one explored in this thesis will be impactful not only in the wine industry but in the future of our society.
id RCAP_39905976f33827f4f9810f8a616b5e67
oai_identifier_str oai:repositorio.utad.pt:10348/10997
network_acronym_str RCAP
network_name_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository_id_str 7160
spelling Analysis of metabolic pathways of Saccharomyces cerevisiae in alcoholic fermentation to mitigate glucose rise in grapes due to global warming effectsGlobal WarmingSystems BiologyIn the modern era, due to human activity and consequent pollution, Earth’s climate has been severely impacted. A direct consequence of this change is Global Warming, the gradual heating of the planet’s surface, oceans, and atmosphere. This rise in temperature impacts all the biosphere, including humans, animals, and crops. One of these crops, the grape, is responsible for one of the world’s most renowned alcoholic beverages: wine. This alcoholic drink has accompanied the human species from ancient times until now, representing today, a gigantic industry worth billions of dollars. In recent years this industry came across some new challenges caused by Global Warming, namely, the higher concentration of glucose in grapes and the consequent rise of ethanol concentrations in wine. The negative consequences presented by this new challenge are vast, ranging from damages to the sensory profile of the wines, public health concerns, and higher taxation of wine products. The present dissertation tackles this emerging problem through Systems Biology and Metabolic Engineering approaches to study strategies that mitigate these changes by manipulating yeast metabolism. The pipeline of this study involves the identification and simulation of low-ethanol metabolic engineering strategies. This framework allowed us to simulate genetic and environmental conditions and analyze the impact of each strategy in the yeast’s metabolism. The results obtained showed that the most promising yeast strains to fit the needs of winemaking were the GPD1 and HC23 approaches. These results showed compliance with the literature in several parameters ensuring the reliability of the simulation and finding a strong similarity between the experimental bibliographic data and the in silico simulation results. These results corroborated with the scientific data regarding biomass values, ethanol production and glycerol yield. The results obtained in this work sustain the hypothesis that these methods can be a great advantage to the wine industry. Not only making the process more effective but possibly giving the wine healthier properties and a more predictable sensory profile. It is possible to say that systems and synthetic biology-based strategies like the one explored in this thesis will be impactful not only in the wine industry but in the future of our society.Na era moderna, devido à atividade humana e consequente poluição, o clima da Terra foi severamente afetado. Uma consequência direta desta mudança é o aquecimento global, o aquecimento gradual da superfície do planeta, dos oceanos e da atmosfera. Este aumento na temperatura impacta toda a biosfera, incluindo humanos, animais e plantações. Uma dessas plantações, é a vinha e a uva, responsável por uma das bebidas alcoólicas mais conhecidas do mundo: o vinho. Esta bebida alcoólica acompanha a espécie humana desde a antiguidade até hoje, representando hoje, uma gigantesca indústria de bilhões de dólares. Nos últimos anos esta indústria deparou-se com alguns novos desafios provocados pelo Aquecimento Global, nomeadamente, a maior concentração de glucose nas uvas e o consequente aumento das concentrações de etanol no vinho. As consequências negativas apresentadas por este novo desafio são vastas, desde danos ao perfil sensorial dos vinhos, a preocupações com a saúde pública e à maior tributação dos produtos vínicos. A presente dissertação aborda este problema emergente por meio de abordagens de Biologia de Sistemas e Engenharia Metabólica para estudar estratégias que mitiguem essas mudanças por meio da manipulação do metabolismo da levedura. O pipeline deste estudo envolve a identificação e simulação de estratégias de engenharia metabólica com baixo teor de etanol. Esta estrutura permitiu-nos simular as condições genéticas e ambientais e analisar o impacto de cada estratégia no metabolismo da levedura. Os resultados obtidos mostraram que as variantes de leveduras mais promissoras para atender às necessidades de vinificação foram as abordagens GPD1 e HC23. Esses resultados mostraram conformidade com a literatura em diversos parâmetros garantindo a confiabilidade da simulação e encontrando forte similaridade entre os dados bibliográficos experimentais e os resultados da simulação in silico. Esses resultados corroboram com os dados científicos sobre os valores de biomassa, produção de etanol e rendimento de glicerol. Os resultados obtidos neste trabalho sustentam a hipótese de que esses métodos podem ser uma grande vantagem para a indústria do vinho. Não só tornando o processo mais eficaz, mas possivelmente dando ao vinho propriedades mais saudáveis e um perfil sensorial mais previsível. É possível dizer que os sistemas e estratégias baseadas na biologia sintética, como a explorada nesta tese, terão impacto não só na indústria do vinho, mas também no futuro de nossa sociedade.2022-01-24T15:18:29Z2021-09-16T00:00:00Z2021-09-16info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesisapplication/pdfapplication/pdfapplication/pdfhttp://hdl.handle.net/10348/10997engMagalhães, João Pedro Zamith Piedade Ribeiroinfo:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2024-02-02T12:38:56Zoai:repositorio.utad.pt:10348/10997Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-20T02:02:10.236166Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Analysis of metabolic pathways of Saccharomyces cerevisiae in alcoholic fermentation to mitigate glucose rise in grapes due to global warming effects
title Analysis of metabolic pathways of Saccharomyces cerevisiae in alcoholic fermentation to mitigate glucose rise in grapes due to global warming effects
spellingShingle Analysis of metabolic pathways of Saccharomyces cerevisiae in alcoholic fermentation to mitigate glucose rise in grapes due to global warming effects
Magalhães, João Pedro Zamith Piedade Ribeiro
Global Warming
Systems Biology
title_short Analysis of metabolic pathways of Saccharomyces cerevisiae in alcoholic fermentation to mitigate glucose rise in grapes due to global warming effects
title_full Analysis of metabolic pathways of Saccharomyces cerevisiae in alcoholic fermentation to mitigate glucose rise in grapes due to global warming effects
title_fullStr Analysis of metabolic pathways of Saccharomyces cerevisiae in alcoholic fermentation to mitigate glucose rise in grapes due to global warming effects
title_full_unstemmed Analysis of metabolic pathways of Saccharomyces cerevisiae in alcoholic fermentation to mitigate glucose rise in grapes due to global warming effects
title_sort Analysis of metabolic pathways of Saccharomyces cerevisiae in alcoholic fermentation to mitigate glucose rise in grapes due to global warming effects
author Magalhães, João Pedro Zamith Piedade Ribeiro
author_facet Magalhães, João Pedro Zamith Piedade Ribeiro
author_role author
dc.contributor.author.fl_str_mv Magalhães, João Pedro Zamith Piedade Ribeiro
dc.subject.por.fl_str_mv Global Warming
Systems Biology
topic Global Warming
Systems Biology
description In the modern era, due to human activity and consequent pollution, Earth’s climate has been severely impacted. A direct consequence of this change is Global Warming, the gradual heating of the planet’s surface, oceans, and atmosphere. This rise in temperature impacts all the biosphere, including humans, animals, and crops. One of these crops, the grape, is responsible for one of the world’s most renowned alcoholic beverages: wine. This alcoholic drink has accompanied the human species from ancient times until now, representing today, a gigantic industry worth billions of dollars. In recent years this industry came across some new challenges caused by Global Warming, namely, the higher concentration of glucose in grapes and the consequent rise of ethanol concentrations in wine. The negative consequences presented by this new challenge are vast, ranging from damages to the sensory profile of the wines, public health concerns, and higher taxation of wine products. The present dissertation tackles this emerging problem through Systems Biology and Metabolic Engineering approaches to study strategies that mitigate these changes by manipulating yeast metabolism. The pipeline of this study involves the identification and simulation of low-ethanol metabolic engineering strategies. This framework allowed us to simulate genetic and environmental conditions and analyze the impact of each strategy in the yeast’s metabolism. The results obtained showed that the most promising yeast strains to fit the needs of winemaking were the GPD1 and HC23 approaches. These results showed compliance with the literature in several parameters ensuring the reliability of the simulation and finding a strong similarity between the experimental bibliographic data and the in silico simulation results. These results corroborated with the scientific data regarding biomass values, ethanol production and glycerol yield. The results obtained in this work sustain the hypothesis that these methods can be a great advantage to the wine industry. Not only making the process more effective but possibly giving the wine healthier properties and a more predictable sensory profile. It is possible to say that systems and synthetic biology-based strategies like the one explored in this thesis will be impactful not only in the wine industry but in the future of our society.
publishDate 2021
dc.date.none.fl_str_mv 2021-09-16T00:00:00Z
2021-09-16
2022-01-24T15:18:29Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/masterThesis
format masterThesis
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10348/10997
url http://hdl.handle.net/10348/10997
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
application/pdf
application/pdf
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron:RCAAP
instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron_str RCAAP
institution RCAAP
reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
repository.mail.fl_str_mv
_version_ 1799137106478497792