ChemT, an open-source software for building template-based chemical libraries
Autor(a) principal: | |
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Data de Publicação: | 2011 |
Outros Autores: | , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
Texto Completo: | http://hdl.handle.net/10198/6231 |
Resumo: | Mushrooms represent an unlimited source of compounds with antitumor and immunostimulating properties and mushroom intake as been shown to reduce the risk of breast cancer. A large number of LMW (low molecular weight) compounds present in mushrooms have been identified including: phenolic acids, flavonoids, tocopherols, carotenoids, sugars and fatty acids. In order to evaluate which wild mushroom LMW compounds may be involved in anti-breast cancer activity we selected a representative dataset of 43 LMW compounds and performed molecular docking against 3 known protein targets involved in breast cancer (Aromatase, Estrone Sulfatase and 17β-HSD-1) using AutoDock4 as docking software. The estimated inhibition constants for all LMW compounds were determined and the potential structure-activity relationships for the compounds with the best estimated inhibition constants are discussed for each compound family. 4-O-caffeoylquinic, naringin and lycopene stand out as the top ranked potential inhibitors for Aromatase, Estrone Sulfatase and 17β-HSD1, respectively, and the 3-D docked conformation for these compounds are discussed in detail. This information provides several interesting starting points for further development of Aromatase, Estrone Sulfatase and 17β-HSD1 inhibitors. |
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Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
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ChemT, an open-source software for building template-based chemical librariesMushroomsNutraceuticalsBreast cancerMolecular DockingAutoDock4Mushrooms represent an unlimited source of compounds with antitumor and immunostimulating properties and mushroom intake as been shown to reduce the risk of breast cancer. A large number of LMW (low molecular weight) compounds present in mushrooms have been identified including: phenolic acids, flavonoids, tocopherols, carotenoids, sugars and fatty acids. In order to evaluate which wild mushroom LMW compounds may be involved in anti-breast cancer activity we selected a representative dataset of 43 LMW compounds and performed molecular docking against 3 known protein targets involved in breast cancer (Aromatase, Estrone Sulfatase and 17β-HSD-1) using AutoDock4 as docking software. The estimated inhibition constants for all LMW compounds were determined and the potential structure-activity relationships for the compounds with the best estimated inhibition constants are discussed for each compound family. 4-O-caffeoylquinic, naringin and lycopene stand out as the top ranked potential inhibitors for Aromatase, Estrone Sulfatase and 17β-HSD1, respectively, and the 3-D docked conformation for these compounds are discussed in detail. This information provides several interesting starting points for further development of Aromatase, Estrone Sulfatase and 17β-HSD1 inhibitors.Taylor & FrancisBiblioteca Digital do IPBAbreu, Rui M.V.Froufe, Hugo J.C.Daniel, Pedro O.M.Queiroz, Maria João R.P.Ferreira, Isabel C.F.R.2011-10-25T09:57:17Z20112011-01-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfapplication/pdfhttp://hdl.handle.net/10198/6231engAbreu, Rui M. V.; Froufe, Hugo J. C.; Daniel, Pedro O.M.; Queiroz, Maria-João R. P.; Ferreira, Isabel C.F.R. (2011). ChemT, an open-source software for building template-based chemical libraries. SAR and QSAR Environmental Research. ISSN 1029-046X. 22:5-6, p. 603-6101029-046X10.1080/1062936X.2011.604097info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-11-21T10:15:41Zoai:bibliotecadigital.ipb.pt:10198/6231Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T22:58:15.803035Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse |
dc.title.none.fl_str_mv |
ChemT, an open-source software for building template-based chemical libraries |
title |
ChemT, an open-source software for building template-based chemical libraries |
spellingShingle |
ChemT, an open-source software for building template-based chemical libraries Abreu, Rui M.V. Mushrooms Nutraceuticals Breast cancer Molecular Docking AutoDock4 |
title_short |
ChemT, an open-source software for building template-based chemical libraries |
title_full |
ChemT, an open-source software for building template-based chemical libraries |
title_fullStr |
ChemT, an open-source software for building template-based chemical libraries |
title_full_unstemmed |
ChemT, an open-source software for building template-based chemical libraries |
title_sort |
ChemT, an open-source software for building template-based chemical libraries |
author |
Abreu, Rui M.V. |
author_facet |
Abreu, Rui M.V. Froufe, Hugo J.C. Daniel, Pedro O.M. Queiroz, Maria João R.P. Ferreira, Isabel C.F.R. |
author_role |
author |
author2 |
Froufe, Hugo J.C. Daniel, Pedro O.M. Queiroz, Maria João R.P. Ferreira, Isabel C.F.R. |
author2_role |
author author author author |
dc.contributor.none.fl_str_mv |
Biblioteca Digital do IPB |
dc.contributor.author.fl_str_mv |
Abreu, Rui M.V. Froufe, Hugo J.C. Daniel, Pedro O.M. Queiroz, Maria João R.P. Ferreira, Isabel C.F.R. |
dc.subject.por.fl_str_mv |
Mushrooms Nutraceuticals Breast cancer Molecular Docking AutoDock4 |
topic |
Mushrooms Nutraceuticals Breast cancer Molecular Docking AutoDock4 |
description |
Mushrooms represent an unlimited source of compounds with antitumor and immunostimulating properties and mushroom intake as been shown to reduce the risk of breast cancer. A large number of LMW (low molecular weight) compounds present in mushrooms have been identified including: phenolic acids, flavonoids, tocopherols, carotenoids, sugars and fatty acids. In order to evaluate which wild mushroom LMW compounds may be involved in anti-breast cancer activity we selected a representative dataset of 43 LMW compounds and performed molecular docking against 3 known protein targets involved in breast cancer (Aromatase, Estrone Sulfatase and 17β-HSD-1) using AutoDock4 as docking software. The estimated inhibition constants for all LMW compounds were determined and the potential structure-activity relationships for the compounds with the best estimated inhibition constants are discussed for each compound family. 4-O-caffeoylquinic, naringin and lycopene stand out as the top ranked potential inhibitors for Aromatase, Estrone Sulfatase and 17β-HSD1, respectively, and the 3-D docked conformation for these compounds are discussed in detail. This information provides several interesting starting points for further development of Aromatase, Estrone Sulfatase and 17β-HSD1 inhibitors. |
publishDate |
2011 |
dc.date.none.fl_str_mv |
2011-10-25T09:57:17Z 2011 2011-01-01T00:00:00Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://hdl.handle.net/10198/6231 |
url |
http://hdl.handle.net/10198/6231 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Abreu, Rui M. V.; Froufe, Hugo J. C.; Daniel, Pedro O.M.; Queiroz, Maria-João R. P.; Ferreira, Isabel C.F.R. (2011). ChemT, an open-source software for building template-based chemical libraries. SAR and QSAR Environmental Research. ISSN 1029-046X. 22:5-6, p. 603-610 1029-046X 10.1080/1062936X.2011.604097 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf application/pdf |
dc.publisher.none.fl_str_mv |
Taylor & Francis |
publisher.none.fl_str_mv |
Taylor & Francis |
dc.source.none.fl_str_mv |
reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação instacron:RCAAP |
instname_str |
Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
instacron_str |
RCAAP |
institution |
RCAAP |
reponame_str |
Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
collection |
Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
repository.name.fl_str_mv |
Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
repository.mail.fl_str_mv |
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1799135201873362944 |