ChemT, an open-source software for building template-based chemical libraries

Detalhes bibliográficos
Autor(a) principal: Abreu, Rui M.V.
Data de Publicação: 2011
Outros Autores: Froufe, Hugo J.C., Daniel, Pedro O.M., Queiroz, Maria João R.P., Ferreira, Isabel C.F.R.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10198/6231
Resumo: Mushrooms represent an unlimited source of compounds with antitumor and immunostimulating properties and mushroom intake as been shown to reduce the risk of breast cancer. A large number of LMW (low molecular weight) compounds present in mushrooms have been identified including: phenolic acids, flavonoids, tocopherols, carotenoids, sugars and fatty acids. In order to evaluate which wild mushroom LMW compounds may be involved in anti-breast cancer activity we selected a representative dataset of 43 LMW compounds and performed molecular docking against 3 known protein targets involved in breast cancer (Aromatase, Estrone Sulfatase and 17β-HSD-1) using AutoDock4 as docking software. The estimated inhibition constants for all LMW compounds were determined and the potential structure-activity relationships for the compounds with the best estimated inhibition constants are discussed for each compound family. 4-O-caffeoylquinic, naringin and lycopene stand out as the top ranked potential inhibitors for Aromatase, Estrone Sulfatase and 17β-HSD1, respectively, and the 3-D docked conformation for these compounds are discussed in detail. This information provides several interesting starting points for further development of Aromatase, Estrone Sulfatase and 17β-HSD1 inhibitors.
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spelling ChemT, an open-source software for building template-based chemical librariesMushroomsNutraceuticalsBreast cancerMolecular DockingAutoDock4Mushrooms represent an unlimited source of compounds with antitumor and immunostimulating properties and mushroom intake as been shown to reduce the risk of breast cancer. A large number of LMW (low molecular weight) compounds present in mushrooms have been identified including: phenolic acids, flavonoids, tocopherols, carotenoids, sugars and fatty acids. In order to evaluate which wild mushroom LMW compounds may be involved in anti-breast cancer activity we selected a representative dataset of 43 LMW compounds and performed molecular docking against 3 known protein targets involved in breast cancer (Aromatase, Estrone Sulfatase and 17β-HSD-1) using AutoDock4 as docking software. The estimated inhibition constants for all LMW compounds were determined and the potential structure-activity relationships for the compounds with the best estimated inhibition constants are discussed for each compound family. 4-O-caffeoylquinic, naringin and lycopene stand out as the top ranked potential inhibitors for Aromatase, Estrone Sulfatase and 17β-HSD1, respectively, and the 3-D docked conformation for these compounds are discussed in detail. This information provides several interesting starting points for further development of Aromatase, Estrone Sulfatase and 17β-HSD1 inhibitors.Taylor & FrancisBiblioteca Digital do IPBAbreu, Rui M.V.Froufe, Hugo J.C.Daniel, Pedro O.M.Queiroz, Maria João R.P.Ferreira, Isabel C.F.R.2011-10-25T09:57:17Z20112011-01-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfapplication/pdfhttp://hdl.handle.net/10198/6231engAbreu, Rui M. V.; Froufe, Hugo J. C.; Daniel, Pedro O.M.; Queiroz, Maria-João R. P.; Ferreira, Isabel C.F.R. (2011). ChemT, an open-source software for building template-based chemical libraries. SAR and QSAR Environmental Research. ISSN 1029-046X. 22:5-6, p. 603-6101029-046X10.1080/1062936X.2011.604097info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-11-21T10:15:41Zoai:bibliotecadigital.ipb.pt:10198/6231Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T22:58:15.803035Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv ChemT, an open-source software for building template-based chemical libraries
title ChemT, an open-source software for building template-based chemical libraries
spellingShingle ChemT, an open-source software for building template-based chemical libraries
Abreu, Rui M.V.
Mushrooms
Nutraceuticals
Breast cancer
Molecular Docking
AutoDock4
title_short ChemT, an open-source software for building template-based chemical libraries
title_full ChemT, an open-source software for building template-based chemical libraries
title_fullStr ChemT, an open-source software for building template-based chemical libraries
title_full_unstemmed ChemT, an open-source software for building template-based chemical libraries
title_sort ChemT, an open-source software for building template-based chemical libraries
author Abreu, Rui M.V.
author_facet Abreu, Rui M.V.
Froufe, Hugo J.C.
Daniel, Pedro O.M.
Queiroz, Maria João R.P.
Ferreira, Isabel C.F.R.
author_role author
author2 Froufe, Hugo J.C.
Daniel, Pedro O.M.
Queiroz, Maria João R.P.
Ferreira, Isabel C.F.R.
author2_role author
author
author
author
dc.contributor.none.fl_str_mv Biblioteca Digital do IPB
dc.contributor.author.fl_str_mv Abreu, Rui M.V.
Froufe, Hugo J.C.
Daniel, Pedro O.M.
Queiroz, Maria João R.P.
Ferreira, Isabel C.F.R.
dc.subject.por.fl_str_mv Mushrooms
Nutraceuticals
Breast cancer
Molecular Docking
AutoDock4
topic Mushrooms
Nutraceuticals
Breast cancer
Molecular Docking
AutoDock4
description Mushrooms represent an unlimited source of compounds with antitumor and immunostimulating properties and mushroom intake as been shown to reduce the risk of breast cancer. A large number of LMW (low molecular weight) compounds present in mushrooms have been identified including: phenolic acids, flavonoids, tocopherols, carotenoids, sugars and fatty acids. In order to evaluate which wild mushroom LMW compounds may be involved in anti-breast cancer activity we selected a representative dataset of 43 LMW compounds and performed molecular docking against 3 known protein targets involved in breast cancer (Aromatase, Estrone Sulfatase and 17β-HSD-1) using AutoDock4 as docking software. The estimated inhibition constants for all LMW compounds were determined and the potential structure-activity relationships for the compounds with the best estimated inhibition constants are discussed for each compound family. 4-O-caffeoylquinic, naringin and lycopene stand out as the top ranked potential inhibitors for Aromatase, Estrone Sulfatase and 17β-HSD1, respectively, and the 3-D docked conformation for these compounds are discussed in detail. This information provides several interesting starting points for further development of Aromatase, Estrone Sulfatase and 17β-HSD1 inhibitors.
publishDate 2011
dc.date.none.fl_str_mv 2011-10-25T09:57:17Z
2011
2011-01-01T00:00:00Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10198/6231
url http://hdl.handle.net/10198/6231
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Abreu, Rui M. V.; Froufe, Hugo J. C.; Daniel, Pedro O.M.; Queiroz, Maria-João R. P.; Ferreira, Isabel C.F.R. (2011). ChemT, an open-source software for building template-based chemical libraries. SAR and QSAR Environmental Research. ISSN 1029-046X. 22:5-6, p. 603-610
1029-046X
10.1080/1062936X.2011.604097
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
application/pdf
dc.publisher.none.fl_str_mv Taylor & Francis
publisher.none.fl_str_mv Taylor & Francis
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron:RCAAP
instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron_str RCAAP
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reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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