Genetic Meningococcal Antigen Typing System (gMATS): A genotyping tool that predicts 4CMenB strain coverage worldwide
Autor(a) principal: | |
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Data de Publicação: | 2019 |
Outros Autores: | , , , , , , , , , , , , , , , , , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
Texto Completo: | http://hdl.handle.net/10400.18/6634 |
Resumo: | Background: The Meningococcal Antigen Typing System (MATS) was developed to identify meningococcus group B strains with a high likelihood of being covered by the 4CMenB vaccine, but is limited by the requirement for viable isolates from culture-confirmed cases. We examined if antigen genotyping could complement MATS in predicting strain coverage by the 4CMenB vaccine. Methods: From a panel of 3912 MATS-typed invasive meningococcal disease isolates collected in England and Wales in 2007-2008, 2014-2015 and 2015-2016, and in 16 other countries in 2000-2015, 3481 isolates were also characterized by antigen genotyping. Individual associations between antigen genotypes and MATS coverage for each 4CMenB component were used to define a genetic MATS (gMATS). gMATS estimates were compared with England and Wales human complement serum bactericidal assay (hSBA) data and vaccine effectiveness (VE) data from England. Results: Overall, 81% of the strain panel had genetically predictable MATS coverage, with 92% accuracy and highly concordant results across national panels (Lin's accuracy coefficient, 0.98; root-mean-square deviation, 6%). England and Wales strain coverage estimates were 72-73% by genotyping (66-73% by MATS), underestimating hSBA values after four vaccine doses (88%) and VE after two doses (83%). The gMATS predicted strain coverage in other countries was 58-88%. Conclusions: gMATS can replace MATS in predicting 4CMenB strain coverage in four out of five cases, without requiring a cultivable isolate, and is open to further improvement. Both methods underestimated VE in England. Strain coverage predictions in other countries matched or exceeded England and Wales estimates. |
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Genetic Meningococcal Antigen Typing System (gMATS): A genotyping tool that predicts 4CMenB strain coverage worldwide4CMenB VaccineGenotypingNeisseria meningitidis Serogroup BStrain CoveragegMATSInfecções RespiratóriasBackground: The Meningococcal Antigen Typing System (MATS) was developed to identify meningococcus group B strains with a high likelihood of being covered by the 4CMenB vaccine, but is limited by the requirement for viable isolates from culture-confirmed cases. We examined if antigen genotyping could complement MATS in predicting strain coverage by the 4CMenB vaccine. Methods: From a panel of 3912 MATS-typed invasive meningococcal disease isolates collected in England and Wales in 2007-2008, 2014-2015 and 2015-2016, and in 16 other countries in 2000-2015, 3481 isolates were also characterized by antigen genotyping. Individual associations between antigen genotypes and MATS coverage for each 4CMenB component were used to define a genetic MATS (gMATS). gMATS estimates were compared with England and Wales human complement serum bactericidal assay (hSBA) data and vaccine effectiveness (VE) data from England. Results: Overall, 81% of the strain panel had genetically predictable MATS coverage, with 92% accuracy and highly concordant results across national panels (Lin's accuracy coefficient, 0.98; root-mean-square deviation, 6%). England and Wales strain coverage estimates were 72-73% by genotyping (66-73% by MATS), underestimating hSBA values after four vaccine doses (88%) and VE after two doses (83%). The gMATS predicted strain coverage in other countries was 58-88%. Conclusions: gMATS can replace MATS in predicting 4CMenB strain coverage in four out of five cases, without requiring a cultivable isolate, and is open to further improvement. Both methods underestimated VE in England. Strain coverage predictions in other countries matched or exceeded England and Wales estimates.This work was supported by GlaxoSmithKline Biologicals SA,including all costs associated with the development and publishingof the manuscript.Elsevier/ GlaxoSmithKline Biologicals SA.Repositório Científico do Instituto Nacional de SaúdeMuzzi, AlessandroBrozzi, AlessandroSerino, LauraBodini, MargheritaAbad, RaquelCaugant, DominiqueComanducci, MaurizioLemos, Ana PaulaGorla, Maria CeciliaKřížová, PavlaMikula, ClaudiaMulhall, RobertNissen, MichaelNohynek, HannaSimões, Maria JoãoSkoczyńska, AnnaStefanelli, PaolaTaha, Muhamed-KheirToropainen, MaijaTzanakaki, GeorginaVadivelu-Pechai, KumaranWatson, PhilipVazquez, Julio A.Rajam, GowrisankarRappuoli, RinoBorrow, RayMedini, Duccio2020-05-09T15:15:10Z2019-02-082019-02-08T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10400.18/6634engVaccine. 2019 Feb 8;37(7):991-1000. doi: 10.1016/j.vaccine.2018.12.061. Epub 2019 Jan 170264-410X10.1016/j.vaccine.2018.12.061info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-07-20T15:41:46Zoai:repositorio.insa.pt:10400.18/6634Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T18:41:43.359913Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse |
dc.title.none.fl_str_mv |
Genetic Meningococcal Antigen Typing System (gMATS): A genotyping tool that predicts 4CMenB strain coverage worldwide |
title |
Genetic Meningococcal Antigen Typing System (gMATS): A genotyping tool that predicts 4CMenB strain coverage worldwide |
spellingShingle |
Genetic Meningococcal Antigen Typing System (gMATS): A genotyping tool that predicts 4CMenB strain coverage worldwide Muzzi, Alessandro 4CMenB Vaccine Genotyping Neisseria meningitidis Serogroup B Strain Coverage gMATS Infecções Respiratórias |
title_short |
Genetic Meningococcal Antigen Typing System (gMATS): A genotyping tool that predicts 4CMenB strain coverage worldwide |
title_full |
Genetic Meningococcal Antigen Typing System (gMATS): A genotyping tool that predicts 4CMenB strain coverage worldwide |
title_fullStr |
Genetic Meningococcal Antigen Typing System (gMATS): A genotyping tool that predicts 4CMenB strain coverage worldwide |
title_full_unstemmed |
Genetic Meningococcal Antigen Typing System (gMATS): A genotyping tool that predicts 4CMenB strain coverage worldwide |
title_sort |
Genetic Meningococcal Antigen Typing System (gMATS): A genotyping tool that predicts 4CMenB strain coverage worldwide |
author |
Muzzi, Alessandro |
author_facet |
Muzzi, Alessandro Brozzi, Alessandro Serino, Laura Bodini, Margherita Abad, Raquel Caugant, Dominique Comanducci, Maurizio Lemos, Ana Paula Gorla, Maria Cecilia Křížová, Pavla Mikula, Claudia Mulhall, Robert Nissen, Michael Nohynek, Hanna Simões, Maria João Skoczyńska, Anna Stefanelli, Paola Taha, Muhamed-Kheir Toropainen, Maija Tzanakaki, Georgina Vadivelu-Pechai, Kumaran Watson, Philip Vazquez, Julio A. Rajam, Gowrisankar Rappuoli, Rino Borrow, Ray Medini, Duccio |
author_role |
author |
author2 |
Brozzi, Alessandro Serino, Laura Bodini, Margherita Abad, Raquel Caugant, Dominique Comanducci, Maurizio Lemos, Ana Paula Gorla, Maria Cecilia Křížová, Pavla Mikula, Claudia Mulhall, Robert Nissen, Michael Nohynek, Hanna Simões, Maria João Skoczyńska, Anna Stefanelli, Paola Taha, Muhamed-Kheir Toropainen, Maija Tzanakaki, Georgina Vadivelu-Pechai, Kumaran Watson, Philip Vazquez, Julio A. Rajam, Gowrisankar Rappuoli, Rino Borrow, Ray Medini, Duccio |
author2_role |
author author author author author author author author author author author author author author author author author author author author author author author author author author |
dc.contributor.none.fl_str_mv |
Repositório Científico do Instituto Nacional de Saúde |
dc.contributor.author.fl_str_mv |
Muzzi, Alessandro Brozzi, Alessandro Serino, Laura Bodini, Margherita Abad, Raquel Caugant, Dominique Comanducci, Maurizio Lemos, Ana Paula Gorla, Maria Cecilia Křížová, Pavla Mikula, Claudia Mulhall, Robert Nissen, Michael Nohynek, Hanna Simões, Maria João Skoczyńska, Anna Stefanelli, Paola Taha, Muhamed-Kheir Toropainen, Maija Tzanakaki, Georgina Vadivelu-Pechai, Kumaran Watson, Philip Vazquez, Julio A. Rajam, Gowrisankar Rappuoli, Rino Borrow, Ray Medini, Duccio |
dc.subject.por.fl_str_mv |
4CMenB Vaccine Genotyping Neisseria meningitidis Serogroup B Strain Coverage gMATS Infecções Respiratórias |
topic |
4CMenB Vaccine Genotyping Neisseria meningitidis Serogroup B Strain Coverage gMATS Infecções Respiratórias |
description |
Background: The Meningococcal Antigen Typing System (MATS) was developed to identify meningococcus group B strains with a high likelihood of being covered by the 4CMenB vaccine, but is limited by the requirement for viable isolates from culture-confirmed cases. We examined if antigen genotyping could complement MATS in predicting strain coverage by the 4CMenB vaccine. Methods: From a panel of 3912 MATS-typed invasive meningococcal disease isolates collected in England and Wales in 2007-2008, 2014-2015 and 2015-2016, and in 16 other countries in 2000-2015, 3481 isolates were also characterized by antigen genotyping. Individual associations between antigen genotypes and MATS coverage for each 4CMenB component were used to define a genetic MATS (gMATS). gMATS estimates were compared with England and Wales human complement serum bactericidal assay (hSBA) data and vaccine effectiveness (VE) data from England. Results: Overall, 81% of the strain panel had genetically predictable MATS coverage, with 92% accuracy and highly concordant results across national panels (Lin's accuracy coefficient, 0.98; root-mean-square deviation, 6%). England and Wales strain coverage estimates were 72-73% by genotyping (66-73% by MATS), underestimating hSBA values after four vaccine doses (88%) and VE after two doses (83%). The gMATS predicted strain coverage in other countries was 58-88%. Conclusions: gMATS can replace MATS in predicting 4CMenB strain coverage in four out of five cases, without requiring a cultivable isolate, and is open to further improvement. Both methods underestimated VE in England. Strain coverage predictions in other countries matched or exceeded England and Wales estimates. |
publishDate |
2019 |
dc.date.none.fl_str_mv |
2019-02-08 2019-02-08T00:00:00Z 2020-05-09T15:15:10Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://hdl.handle.net/10400.18/6634 |
url |
http://hdl.handle.net/10400.18/6634 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Vaccine. 2019 Feb 8;37(7):991-1000. doi: 10.1016/j.vaccine.2018.12.061. Epub 2019 Jan 17 0264-410X 10.1016/j.vaccine.2018.12.061 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.publisher.none.fl_str_mv |
Elsevier/ GlaxoSmithKline Biologicals SA. |
publisher.none.fl_str_mv |
Elsevier/ GlaxoSmithKline Biologicals SA. |
dc.source.none.fl_str_mv |
reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação instacron:RCAAP |
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Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
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RCAAP |
institution |
RCAAP |
reponame_str |
Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
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Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
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Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
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1799132161739063296 |