Prediction of COVID-19 diagnosis based on openEHR artefacts
Autor(a) principal: | |
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Data de Publicação: | 2022 |
Outros Autores: | , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
Texto Completo: | https://hdl.handle.net/1822/86689 |
Resumo: | Nowadays, we are facing the worldwide pandemic caused by COVID-19. The complexity and momentum of monitoring patients infected with this virus calls for the usage of agile and scalable data structure methodologies. OpenEHR is a healthcare standard that is attracting a lot of attention in recent years due to its comprehensive and robust architecture. The importance of an open, standardized and adaptable approach to clinical data lies in extracting value to generate useful knowledge that really can help healthcare professionals make an assertive decision. This importance is even more accentuated when facing a pandemic context. Thus, in this study, a system for tracking symptoms and health conditions of suspected or confirmed SARS-CoV-2 patients from a Portuguese hospital was developed using openEHR. All data on the evolutionary status of patients in home care as well as the results of their COVID-19 test were used to train different ML algorithms, with the aim of developing a predictive model capable of identifying COVID-19 infections according to the severity of symptoms identified by patients. The CRISP-DM methodology was used to conduct this research. The results obtained were promising, with the best model achieving an accuracy of 96.25%, a precision of 99.91%, a sensitivity of 92.58%, a specificity of 99.92%, and an AUC of 0.963, using the Decision Tree algorithm and the Split Validation method. Hence, in the future, after further testing, the predictive model could be implemented in clinical decision support systems. |
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Prediction of COVID-19 diagnosis based on openEHR artefactsScience & TechnologyNowadays, we are facing the worldwide pandemic caused by COVID-19. The complexity and momentum of monitoring patients infected with this virus calls for the usage of agile and scalable data structure methodologies. OpenEHR is a healthcare standard that is attracting a lot of attention in recent years due to its comprehensive and robust architecture. The importance of an open, standardized and adaptable approach to clinical data lies in extracting value to generate useful knowledge that really can help healthcare professionals make an assertive decision. This importance is even more accentuated when facing a pandemic context. Thus, in this study, a system for tracking symptoms and health conditions of suspected or confirmed SARS-CoV-2 patients from a Portuguese hospital was developed using openEHR. All data on the evolutionary status of patients in home care as well as the results of their COVID-19 test were used to train different ML algorithms, with the aim of developing a predictive model capable of identifying COVID-19 infections according to the severity of symptoms identified by patients. The CRISP-DM methodology was used to conduct this research. The results obtained were promising, with the best model achieving an accuracy of 96.25%, a precision of 99.91%, a sensitivity of 92.58%, a specificity of 99.92%, and an AUC of 0.963, using the Decision Tree algorithm and the Split Validation method. Hence, in the future, after further testing, the predictive model could be implemented in clinical decision support systems.This work is funded by "FCT-Fundacao para a Ciencia e Tecnologia" within the R &D Units Project Scope: UIDB/00319/2020. D.F. thanks the FundacAo para a Ciencia e Tecnologia (FCT), Portugal for the Grant 2021.06308.BD.Nature ResearchUniversidade do MinhoOliveira, Daniela Sofia RijoFerreira, DianaAbreu, NunoLeuschner, PedroAbelha, AntónioMachado, José Manuel2022-07-222022-07-22T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttps://hdl.handle.net/1822/86689engOliveira, D., Ferreira, D., Abreu, N., Leuschner, P., Abelha, A., & Machado, J. (2022, July 22). Prediction of COVID-19 diagnosis based on openEHR artefacts. Scientific Reports. Springer Science and Business Media LLC. http://doi.org/10.1038/s41598-022-15968-z2045-232210.1038/s41598-022-15968-z35869091info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-12-23T01:38:36Zoai:repositorium.sdum.uminho.pt:1822/86689Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T20:33:32.378569Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse |
dc.title.none.fl_str_mv |
Prediction of COVID-19 diagnosis based on openEHR artefacts |
title |
Prediction of COVID-19 diagnosis based on openEHR artefacts |
spellingShingle |
Prediction of COVID-19 diagnosis based on openEHR artefacts Oliveira, Daniela Sofia Rijo Science & Technology |
title_short |
Prediction of COVID-19 diagnosis based on openEHR artefacts |
title_full |
Prediction of COVID-19 diagnosis based on openEHR artefacts |
title_fullStr |
Prediction of COVID-19 diagnosis based on openEHR artefacts |
title_full_unstemmed |
Prediction of COVID-19 diagnosis based on openEHR artefacts |
title_sort |
Prediction of COVID-19 diagnosis based on openEHR artefacts |
author |
Oliveira, Daniela Sofia Rijo |
author_facet |
Oliveira, Daniela Sofia Rijo Ferreira, Diana Abreu, Nuno Leuschner, Pedro Abelha, António Machado, José Manuel |
author_role |
author |
author2 |
Ferreira, Diana Abreu, Nuno Leuschner, Pedro Abelha, António Machado, José Manuel |
author2_role |
author author author author author |
dc.contributor.none.fl_str_mv |
Universidade do Minho |
dc.contributor.author.fl_str_mv |
Oliveira, Daniela Sofia Rijo Ferreira, Diana Abreu, Nuno Leuschner, Pedro Abelha, António Machado, José Manuel |
dc.subject.por.fl_str_mv |
Science & Technology |
topic |
Science & Technology |
description |
Nowadays, we are facing the worldwide pandemic caused by COVID-19. The complexity and momentum of monitoring patients infected with this virus calls for the usage of agile and scalable data structure methodologies. OpenEHR is a healthcare standard that is attracting a lot of attention in recent years due to its comprehensive and robust architecture. The importance of an open, standardized and adaptable approach to clinical data lies in extracting value to generate useful knowledge that really can help healthcare professionals make an assertive decision. This importance is even more accentuated when facing a pandemic context. Thus, in this study, a system for tracking symptoms and health conditions of suspected or confirmed SARS-CoV-2 patients from a Portuguese hospital was developed using openEHR. All data on the evolutionary status of patients in home care as well as the results of their COVID-19 test were used to train different ML algorithms, with the aim of developing a predictive model capable of identifying COVID-19 infections according to the severity of symptoms identified by patients. The CRISP-DM methodology was used to conduct this research. The results obtained were promising, with the best model achieving an accuracy of 96.25%, a precision of 99.91%, a sensitivity of 92.58%, a specificity of 99.92%, and an AUC of 0.963, using the Decision Tree algorithm and the Split Validation method. Hence, in the future, after further testing, the predictive model could be implemented in clinical decision support systems. |
publishDate |
2022 |
dc.date.none.fl_str_mv |
2022-07-22 2022-07-22T00:00:00Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
https://hdl.handle.net/1822/86689 |
url |
https://hdl.handle.net/1822/86689 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Oliveira, D., Ferreira, D., Abreu, N., Leuschner, P., Abelha, A., & Machado, J. (2022, July 22). Prediction of COVID-19 diagnosis based on openEHR artefacts. Scientific Reports. Springer Science and Business Media LLC. http://doi.org/10.1038/s41598-022-15968-z 2045-2322 10.1038/s41598-022-15968-z 35869091 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.publisher.none.fl_str_mv |
Nature Research |
publisher.none.fl_str_mv |
Nature Research |
dc.source.none.fl_str_mv |
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Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
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RCAAP |
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RCAAP |
reponame_str |
Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
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Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
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Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
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