Phytogeographical origin of Madeiran common beans based on phaseolin patterns

Detalhes bibliográficos
Autor(a) principal: Silva, Emanuel Marques da
Data de Publicação: 2010
Outros Autores: Correia, Anísia Soraia Abreu, Lopes, Nuno Alexandre Amaral, Nóbrega, Humberto Gil Moreira, Ganança, José Filipe Teixeira, Domingues, Ana Maria, Khadem, Manhaz, Slaski, Jan Jacek, Carvalho, Miguel Ângelo Almeida Pinheiro de
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10400.13/3173
Resumo: The objective of this work was to determine the geographic origin of the Madeiran common bean (Phaseolus vulgaris) gene pool. Phaseolin patterns of 50 accessions representing the diversity of common bean collected in Madeira, Portugal, and conserved in the ISOPlexis Germplasm Bank, were analysed using the Experion automated electrophoresis system, based on lab-on-a-chip technology. Five common bean standard varieties with typical phaseolin patterns were used to determine the phytogeographical origin of the Madeiran common bean accessions. Ninety two percent of the accessions exhibited a phaseolin pattern consistent with the one of common bean types belonging to the Andean gene pool, while the origin of the remaining 8% of the accessions was indistinguishable. The application of a similarity coefficient of 85%, based on Pearson correlations, increases the number of accessions with uncertain pattern. The analytical approach used permitted the determination of the origin of the common bean gene pool, which is Andean in 98% of the cases, and clustering of the observed variability among the Madeiran common beans.
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spelling Phytogeographical origin of Madeiran common beans based on phaseolin patternsPhaseolus vulgarisGene poolGenetic variabilityGermplasmLab-on-a-chip technologyPool genéticoVariabilidade genéticaGermoplasmaTecnologia lab-on-a-chip.Faculdade de Ciências da VidaThe objective of this work was to determine the geographic origin of the Madeiran common bean (Phaseolus vulgaris) gene pool. Phaseolin patterns of 50 accessions representing the diversity of common bean collected in Madeira, Portugal, and conserved in the ISOPlexis Germplasm Bank, were analysed using the Experion automated electrophoresis system, based on lab-on-a-chip technology. Five common bean standard varieties with typical phaseolin patterns were used to determine the phytogeographical origin of the Madeiran common bean accessions. Ninety two percent of the accessions exhibited a phaseolin pattern consistent with the one of common bean types belonging to the Andean gene pool, while the origin of the remaining 8% of the accessions was indistinguishable. The application of a similarity coefficient of 85%, based on Pearson correlations, increases the number of accessions with uncertain pattern. The analytical approach used permitted the determination of the origin of the common bean gene pool, which is Andean in 98% of the cases, and clustering of the observed variability among the Madeiran common beans.O objetivo deste trabalho foi determinar a origem geográfica do “pool” genético do feijoeiro‑comum (Phaseolus vulgaris) da ilha da Madeira, Portugal. Os perfis de faseolinas de 50 acessos que representam a diversidade do feijoeiro-comum coletados na ilha da Madeira, conservados no banco de germoplasma ISOPlexis, foram analisados por meio do sistema de eletroforese automática Experion, baseado na tecnologia “lab‑on‑a‑chip”. Cinco variedades padrão de feijoeiro, com perfis típicos de faseolina, foram usadas para determinar a origem fitogeográfica dos acessos de feijoeiro-comum da ilha da Madeira. Noventa e dois por cento dos acessos exibiram um perfil consistente com o dos tipos pertencentes ao “pool” genético Andino, enquanto não foi possível determinar a origem de 8% dos acessos restantes. A aplicação de um coeficiente de similaridade de 85%, com base em correlações de Pearson, aumentou o número de acessos com perfil incerto. A abordagem analítica utilizada permitiu determinar a origem andina do “pool” genético em 98% dos casos, e o agrupamento da variabilidade observada entre os feijões da Madeira.Fundação para a Ciência e Tecnologia; to European Union INTERREG IIIB program of the European Regional Development Fund; to the Madeiran farmers, who assisted with the sample collection; to all Germobanco project partners, for the support; to the Misión Biológica de Galicia, for the cultivar standards.Embrapa Secretaria de Pesquisa e DesenvolvimentoDigitUMaSilva, Emanuel Marques daCorreia, Anísia Soraia AbreuLopes, Nuno Alexandre AmaralNóbrega, Humberto Gil MoreiraGanança, José Filipe TeixeiraDomingues, Ana MariaKhadem, ManhazSlaski, Jan JacekCarvalho, Miguel Ângelo Almeida Pinheiro de2021-03-17T15:25:31Z20102010-01-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10400.13/3173engSilva, E. M. D., Correia, A. S. A., Lopes, N. A. A., Nóbrega, H. G. M., Ganança, J. F. T., Domingues, A. M., ... & Carvalho, M. Â. A. P. D. (2010). Phytogeographical origin of Madeiran common beans based on phaseolin patterns. Pesquisa Agropecuária Brasileira, 45(8), 863-871. https://dx.doi.org/10.1590/S0100-204X201000080001210.1590/S0100-204X2010000800012info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-11-05T03:31:02Zoai:digituma.uma.pt:10400.13/3173Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T15:06:07.387095Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Phytogeographical origin of Madeiran common beans based on phaseolin patterns
title Phytogeographical origin of Madeiran common beans based on phaseolin patterns
spellingShingle Phytogeographical origin of Madeiran common beans based on phaseolin patterns
Silva, Emanuel Marques da
Phaseolus vulgaris
Gene pool
Genetic variability
Germplasm
Lab-on-a-chip technology
Pool genético
Variabilidade genética
Germoplasma
Tecnologia lab-on-a-chip
.
Faculdade de Ciências da Vida
title_short Phytogeographical origin of Madeiran common beans based on phaseolin patterns
title_full Phytogeographical origin of Madeiran common beans based on phaseolin patterns
title_fullStr Phytogeographical origin of Madeiran common beans based on phaseolin patterns
title_full_unstemmed Phytogeographical origin of Madeiran common beans based on phaseolin patterns
title_sort Phytogeographical origin of Madeiran common beans based on phaseolin patterns
author Silva, Emanuel Marques da
author_facet Silva, Emanuel Marques da
Correia, Anísia Soraia Abreu
Lopes, Nuno Alexandre Amaral
Nóbrega, Humberto Gil Moreira
Ganança, José Filipe Teixeira
Domingues, Ana Maria
Khadem, Manhaz
Slaski, Jan Jacek
Carvalho, Miguel Ângelo Almeida Pinheiro de
author_role author
author2 Correia, Anísia Soraia Abreu
Lopes, Nuno Alexandre Amaral
Nóbrega, Humberto Gil Moreira
Ganança, José Filipe Teixeira
Domingues, Ana Maria
Khadem, Manhaz
Slaski, Jan Jacek
Carvalho, Miguel Ângelo Almeida Pinheiro de
author2_role author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv DigitUMa
dc.contributor.author.fl_str_mv Silva, Emanuel Marques da
Correia, Anísia Soraia Abreu
Lopes, Nuno Alexandre Amaral
Nóbrega, Humberto Gil Moreira
Ganança, José Filipe Teixeira
Domingues, Ana Maria
Khadem, Manhaz
Slaski, Jan Jacek
Carvalho, Miguel Ângelo Almeida Pinheiro de
dc.subject.por.fl_str_mv Phaseolus vulgaris
Gene pool
Genetic variability
Germplasm
Lab-on-a-chip technology
Pool genético
Variabilidade genética
Germoplasma
Tecnologia lab-on-a-chip
.
Faculdade de Ciências da Vida
topic Phaseolus vulgaris
Gene pool
Genetic variability
Germplasm
Lab-on-a-chip technology
Pool genético
Variabilidade genética
Germoplasma
Tecnologia lab-on-a-chip
.
Faculdade de Ciências da Vida
description The objective of this work was to determine the geographic origin of the Madeiran common bean (Phaseolus vulgaris) gene pool. Phaseolin patterns of 50 accessions representing the diversity of common bean collected in Madeira, Portugal, and conserved in the ISOPlexis Germplasm Bank, were analysed using the Experion automated electrophoresis system, based on lab-on-a-chip technology. Five common bean standard varieties with typical phaseolin patterns were used to determine the phytogeographical origin of the Madeiran common bean accessions. Ninety two percent of the accessions exhibited a phaseolin pattern consistent with the one of common bean types belonging to the Andean gene pool, while the origin of the remaining 8% of the accessions was indistinguishable. The application of a similarity coefficient of 85%, based on Pearson correlations, increases the number of accessions with uncertain pattern. The analytical approach used permitted the determination of the origin of the common bean gene pool, which is Andean in 98% of the cases, and clustering of the observed variability among the Madeiran common beans.
publishDate 2010
dc.date.none.fl_str_mv 2010
2010-01-01T00:00:00Z
2021-03-17T15:25:31Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10400.13/3173
url http://hdl.handle.net/10400.13/3173
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Silva, E. M. D., Correia, A. S. A., Lopes, N. A. A., Nóbrega, H. G. M., Ganança, J. F. T., Domingues, A. M., ... & Carvalho, M. Â. A. P. D. (2010). Phytogeographical origin of Madeiran common beans based on phaseolin patterns. Pesquisa Agropecuária Brasileira, 45(8), 863-871. https://dx.doi.org/10.1590/S0100-204X2010000800012
10.1590/S0100-204X2010000800012
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Embrapa Secretaria de Pesquisa e Desenvolvimento
publisher.none.fl_str_mv Embrapa Secretaria de Pesquisa e Desenvolvimento
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron:RCAAP
instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron_str RCAAP
institution RCAAP
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collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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