Phytogeographical origin of Madeiran common beans based on phaseolin patterns
Autor(a) principal: | |
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Data de Publicação: | 2010 |
Outros Autores: | , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
Texto Completo: | http://hdl.handle.net/10400.13/3173 |
Resumo: | The objective of this work was to determine the geographic origin of the Madeiran common bean (Phaseolus vulgaris) gene pool. Phaseolin patterns of 50 accessions representing the diversity of common bean collected in Madeira, Portugal, and conserved in the ISOPlexis Germplasm Bank, were analysed using the Experion automated electrophoresis system, based on lab-on-a-chip technology. Five common bean standard varieties with typical phaseolin patterns were used to determine the phytogeographical origin of the Madeiran common bean accessions. Ninety two percent of the accessions exhibited a phaseolin pattern consistent with the one of common bean types belonging to the Andean gene pool, while the origin of the remaining 8% of the accessions was indistinguishable. The application of a similarity coefficient of 85%, based on Pearson correlations, increases the number of accessions with uncertain pattern. The analytical approach used permitted the determination of the origin of the common bean gene pool, which is Andean in 98% of the cases, and clustering of the observed variability among the Madeiran common beans. |
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Phytogeographical origin of Madeiran common beans based on phaseolin patternsPhaseolus vulgarisGene poolGenetic variabilityGermplasmLab-on-a-chip technologyPool genéticoVariabilidade genéticaGermoplasmaTecnologia lab-on-a-chip.Faculdade de Ciências da VidaThe objective of this work was to determine the geographic origin of the Madeiran common bean (Phaseolus vulgaris) gene pool. Phaseolin patterns of 50 accessions representing the diversity of common bean collected in Madeira, Portugal, and conserved in the ISOPlexis Germplasm Bank, were analysed using the Experion automated electrophoresis system, based on lab-on-a-chip technology. Five common bean standard varieties with typical phaseolin patterns were used to determine the phytogeographical origin of the Madeiran common bean accessions. Ninety two percent of the accessions exhibited a phaseolin pattern consistent with the one of common bean types belonging to the Andean gene pool, while the origin of the remaining 8% of the accessions was indistinguishable. The application of a similarity coefficient of 85%, based on Pearson correlations, increases the number of accessions with uncertain pattern. The analytical approach used permitted the determination of the origin of the common bean gene pool, which is Andean in 98% of the cases, and clustering of the observed variability among the Madeiran common beans.O objetivo deste trabalho foi determinar a origem geográfica do “pool” genético do feijoeiro‑comum (Phaseolus vulgaris) da ilha da Madeira, Portugal. Os perfis de faseolinas de 50 acessos que representam a diversidade do feijoeiro-comum coletados na ilha da Madeira, conservados no banco de germoplasma ISOPlexis, foram analisados por meio do sistema de eletroforese automática Experion, baseado na tecnologia “lab‑on‑a‑chip”. Cinco variedades padrão de feijoeiro, com perfis típicos de faseolina, foram usadas para determinar a origem fitogeográfica dos acessos de feijoeiro-comum da ilha da Madeira. Noventa e dois por cento dos acessos exibiram um perfil consistente com o dos tipos pertencentes ao “pool” genético Andino, enquanto não foi possível determinar a origem de 8% dos acessos restantes. A aplicação de um coeficiente de similaridade de 85%, com base em correlações de Pearson, aumentou o número de acessos com perfil incerto. A abordagem analítica utilizada permitiu determinar a origem andina do “pool” genético em 98% dos casos, e o agrupamento da variabilidade observada entre os feijões da Madeira.Fundação para a Ciência e Tecnologia; to European Union INTERREG IIIB program of the European Regional Development Fund; to the Madeiran farmers, who assisted with the sample collection; to all Germobanco project partners, for the support; to the Misión Biológica de Galicia, for the cultivar standards.Embrapa Secretaria de Pesquisa e DesenvolvimentoDigitUMaSilva, Emanuel Marques daCorreia, Anísia Soraia AbreuLopes, Nuno Alexandre AmaralNóbrega, Humberto Gil MoreiraGanança, José Filipe TeixeiraDomingues, Ana MariaKhadem, ManhazSlaski, Jan JacekCarvalho, Miguel Ângelo Almeida Pinheiro de2021-03-17T15:25:31Z20102010-01-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10400.13/3173engSilva, E. M. D., Correia, A. S. A., Lopes, N. A. A., Nóbrega, H. G. M., Ganança, J. F. T., Domingues, A. M., ... & Carvalho, M. Â. A. P. D. (2010). Phytogeographical origin of Madeiran common beans based on phaseolin patterns. Pesquisa Agropecuária Brasileira, 45(8), 863-871. https://dx.doi.org/10.1590/S0100-204X201000080001210.1590/S0100-204X2010000800012info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-11-05T03:31:02Zoai:digituma.uma.pt:10400.13/3173Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T15:06:07.387095Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse |
dc.title.none.fl_str_mv |
Phytogeographical origin of Madeiran common beans based on phaseolin patterns |
title |
Phytogeographical origin of Madeiran common beans based on phaseolin patterns |
spellingShingle |
Phytogeographical origin of Madeiran common beans based on phaseolin patterns Silva, Emanuel Marques da Phaseolus vulgaris Gene pool Genetic variability Germplasm Lab-on-a-chip technology Pool genético Variabilidade genética Germoplasma Tecnologia lab-on-a-chip . Faculdade de Ciências da Vida |
title_short |
Phytogeographical origin of Madeiran common beans based on phaseolin patterns |
title_full |
Phytogeographical origin of Madeiran common beans based on phaseolin patterns |
title_fullStr |
Phytogeographical origin of Madeiran common beans based on phaseolin patterns |
title_full_unstemmed |
Phytogeographical origin of Madeiran common beans based on phaseolin patterns |
title_sort |
Phytogeographical origin of Madeiran common beans based on phaseolin patterns |
author |
Silva, Emanuel Marques da |
author_facet |
Silva, Emanuel Marques da Correia, Anísia Soraia Abreu Lopes, Nuno Alexandre Amaral Nóbrega, Humberto Gil Moreira Ganança, José Filipe Teixeira Domingues, Ana Maria Khadem, Manhaz Slaski, Jan Jacek Carvalho, Miguel Ângelo Almeida Pinheiro de |
author_role |
author |
author2 |
Correia, Anísia Soraia Abreu Lopes, Nuno Alexandre Amaral Nóbrega, Humberto Gil Moreira Ganança, José Filipe Teixeira Domingues, Ana Maria Khadem, Manhaz Slaski, Jan Jacek Carvalho, Miguel Ângelo Almeida Pinheiro de |
author2_role |
author author author author author author author author |
dc.contributor.none.fl_str_mv |
DigitUMa |
dc.contributor.author.fl_str_mv |
Silva, Emanuel Marques da Correia, Anísia Soraia Abreu Lopes, Nuno Alexandre Amaral Nóbrega, Humberto Gil Moreira Ganança, José Filipe Teixeira Domingues, Ana Maria Khadem, Manhaz Slaski, Jan Jacek Carvalho, Miguel Ângelo Almeida Pinheiro de |
dc.subject.por.fl_str_mv |
Phaseolus vulgaris Gene pool Genetic variability Germplasm Lab-on-a-chip technology Pool genético Variabilidade genética Germoplasma Tecnologia lab-on-a-chip . Faculdade de Ciências da Vida |
topic |
Phaseolus vulgaris Gene pool Genetic variability Germplasm Lab-on-a-chip technology Pool genético Variabilidade genética Germoplasma Tecnologia lab-on-a-chip . Faculdade de Ciências da Vida |
description |
The objective of this work was to determine the geographic origin of the Madeiran common bean (Phaseolus vulgaris) gene pool. Phaseolin patterns of 50 accessions representing the diversity of common bean collected in Madeira, Portugal, and conserved in the ISOPlexis Germplasm Bank, were analysed using the Experion automated electrophoresis system, based on lab-on-a-chip technology. Five common bean standard varieties with typical phaseolin patterns were used to determine the phytogeographical origin of the Madeiran common bean accessions. Ninety two percent of the accessions exhibited a phaseolin pattern consistent with the one of common bean types belonging to the Andean gene pool, while the origin of the remaining 8% of the accessions was indistinguishable. The application of a similarity coefficient of 85%, based on Pearson correlations, increases the number of accessions with uncertain pattern. The analytical approach used permitted the determination of the origin of the common bean gene pool, which is Andean in 98% of the cases, and clustering of the observed variability among the Madeiran common beans. |
publishDate |
2010 |
dc.date.none.fl_str_mv |
2010 2010-01-01T00:00:00Z 2021-03-17T15:25:31Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://hdl.handle.net/10400.13/3173 |
url |
http://hdl.handle.net/10400.13/3173 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Silva, E. M. D., Correia, A. S. A., Lopes, N. A. A., Nóbrega, H. G. M., Ganança, J. F. T., Domingues, A. M., ... & Carvalho, M. Â. A. P. D. (2010). Phytogeographical origin of Madeiran common beans based on phaseolin patterns. Pesquisa Agropecuária Brasileira, 45(8), 863-871. https://dx.doi.org/10.1590/S0100-204X2010000800012 10.1590/S0100-204X2010000800012 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.publisher.none.fl_str_mv |
Embrapa Secretaria de Pesquisa e Desenvolvimento |
publisher.none.fl_str_mv |
Embrapa Secretaria de Pesquisa e Desenvolvimento |
dc.source.none.fl_str_mv |
reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação instacron:RCAAP |
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Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
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RCAAP |
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RCAAP |
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Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
collection |
Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
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Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
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1817553994359242752 |