Identification of Alzheimer’s disease relevant interacting proteins using “in silico” and cellular procedures

Detalhes bibliográficos
Autor(a) principal: Carvalho, Estefânia Coelho
Data de Publicação: 2019
Tipo de documento: Dissertação
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10773/28386
Resumo: APP is a protein of relevance to Alzheimer´s disease as it is the precursor for the Aβ peptide that is the major constituent of senile plaques seen deposited in the brains of individuals with Alzheimer’s Disease. Dephosphorylation, by phosphatases like PP1, is among the most common forms of post-translational modification in proteins and anomalies in this process have been linked to Alzheimer’s disease. Therefore, it may be important to identify APP binding proteins which can be modulated by phosphatases such as PP1. Here we focus on two proteins, TP53BP2 and GRB2. TP53BP2 is a protein that plays a central role in regulating apoptosis and cell growth via its interactions with other proteins such as the members of the p53 family. GRB2 is an adapter protein that provides a connection between cell surface growth factor receptors and the Ras signaling pathway. Firstly, we show that neither of these proteins’ expression levels are affected by exposure to previously aggregated Aβ42 in undifferentiated SH-SY5Y cells. Secondly, relying on yeast two hybrid assays previously carried out by our research group using PP1 or APP as bait, we hypothesized that TP53BP2 and GRB2 could independently be the bridging protein in a trimeric complex involving APP and PP1. After performing co-Immunoprecipitations we were able to validate the interactions between TP53BP2 and PP1 and between GRB2 and APP, while the interactions between TP53BP2 and APP and between GRB2 and PP1 were not detected.
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spelling Identification of Alzheimer’s disease relevant interacting proteins using “in silico” and cellular proceduresAβProtein complexesSH-SY5Y cell lineGRB2TP53BP2Alzheimer’s DiseaseAPP is a protein of relevance to Alzheimer´s disease as it is the precursor for the Aβ peptide that is the major constituent of senile plaques seen deposited in the brains of individuals with Alzheimer’s Disease. Dephosphorylation, by phosphatases like PP1, is among the most common forms of post-translational modification in proteins and anomalies in this process have been linked to Alzheimer’s disease. Therefore, it may be important to identify APP binding proteins which can be modulated by phosphatases such as PP1. Here we focus on two proteins, TP53BP2 and GRB2. TP53BP2 is a protein that plays a central role in regulating apoptosis and cell growth via its interactions with other proteins such as the members of the p53 family. GRB2 is an adapter protein that provides a connection between cell surface growth factor receptors and the Ras signaling pathway. Firstly, we show that neither of these proteins’ expression levels are affected by exposure to previously aggregated Aβ42 in undifferentiated SH-SY5Y cells. Secondly, relying on yeast two hybrid assays previously carried out by our research group using PP1 or APP as bait, we hypothesized that TP53BP2 and GRB2 could independently be the bridging protein in a trimeric complex involving APP and PP1. After performing co-Immunoprecipitations we were able to validate the interactions between TP53BP2 and PP1 and between GRB2 and APP, while the interactions between TP53BP2 and APP and between GRB2 and PP1 were not detected.A APP é uma proteína de relevância para a doença de Alzheimer, pois é a precursora do péptido Aβ que é o principal constituinte das placas senis que acumulam no cérebro de pacientes com doença de Alzheimer. A desfosforilação, por fosfatases como a PP1, está entre as formas mais comuns de modificação pós-traducional em proteínas e problemas neste processo têm sido associados à doença de Alzheimer. Como tal, pode ser importante identificar proteínas que ligam à APP e que podem ser moduladas por fosfatases como a PP1. Aqui concentramo-nos em duas proteínas, TP53BP2 e GRB2. A TP53BP2 é uma proteína que desempenha um papel central na regulação da apoptose e do crescimento celular através das suas interações, tais como os membros da família p53. A GRB2 é uma proteína que fornece uma ligação entre os recetores da superfície celular que ligam fatores de crescimento e a via de sinalização Ras. Em primeiro lugar, mostramos que nenhum dos níveis de expressão destas proteínas é afetado pela exposição ao Aβ42 previamente agregado, em células SH-SY5Y indiferenciadas. Além disso, tendo em conta testes dois-híbrido em levedura anteriormente realizados pelo nosso grupo de investigação usando PP1 ou APP como isco, hipotetizamos que TP53BP2 e GRB2 poderiam ser independentemente proteínas intermediárias num tri-complexo envolvendo a APP e a PP1. Após realizar co-imunoprecipitações, validamos as interações entre a TP53BP2 e a PP1 e entre a GRB2 e APP enquanto que as interações entre a TP53BP2 e APP e entre a GRB2 e PP1 não foram detetadas.2019-122019-12-01T00:00:00Z2021-12-20T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesisapplication/pdfhttp://hdl.handle.net/10773/28386engCarvalho, Estefânia Coelhoinfo:eu-repo/semantics/embargoedAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2024-02-22T11:54:54Zoai:ria.ua.pt:10773/28386Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-20T03:00:56.772525Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Identification of Alzheimer’s disease relevant interacting proteins using “in silico” and cellular procedures
title Identification of Alzheimer’s disease relevant interacting proteins using “in silico” and cellular procedures
spellingShingle Identification of Alzheimer’s disease relevant interacting proteins using “in silico” and cellular procedures
Carvalho, Estefânia Coelho

Protein complexes
SH-SY5Y cell line
GRB2
TP53BP2
Alzheimer’s Disease
title_short Identification of Alzheimer’s disease relevant interacting proteins using “in silico” and cellular procedures
title_full Identification of Alzheimer’s disease relevant interacting proteins using “in silico” and cellular procedures
title_fullStr Identification of Alzheimer’s disease relevant interacting proteins using “in silico” and cellular procedures
title_full_unstemmed Identification of Alzheimer’s disease relevant interacting proteins using “in silico” and cellular procedures
title_sort Identification of Alzheimer’s disease relevant interacting proteins using “in silico” and cellular procedures
author Carvalho, Estefânia Coelho
author_facet Carvalho, Estefânia Coelho
author_role author
dc.contributor.author.fl_str_mv Carvalho, Estefânia Coelho
dc.subject.por.fl_str_mv
Protein complexes
SH-SY5Y cell line
GRB2
TP53BP2
Alzheimer’s Disease
topic
Protein complexes
SH-SY5Y cell line
GRB2
TP53BP2
Alzheimer’s Disease
description APP is a protein of relevance to Alzheimer´s disease as it is the precursor for the Aβ peptide that is the major constituent of senile plaques seen deposited in the brains of individuals with Alzheimer’s Disease. Dephosphorylation, by phosphatases like PP1, is among the most common forms of post-translational modification in proteins and anomalies in this process have been linked to Alzheimer’s disease. Therefore, it may be important to identify APP binding proteins which can be modulated by phosphatases such as PP1. Here we focus on two proteins, TP53BP2 and GRB2. TP53BP2 is a protein that plays a central role in regulating apoptosis and cell growth via its interactions with other proteins such as the members of the p53 family. GRB2 is an adapter protein that provides a connection between cell surface growth factor receptors and the Ras signaling pathway. Firstly, we show that neither of these proteins’ expression levels are affected by exposure to previously aggregated Aβ42 in undifferentiated SH-SY5Y cells. Secondly, relying on yeast two hybrid assays previously carried out by our research group using PP1 or APP as bait, we hypothesized that TP53BP2 and GRB2 could independently be the bridging protein in a trimeric complex involving APP and PP1. After performing co-Immunoprecipitations we were able to validate the interactions between TP53BP2 and PP1 and between GRB2 and APP, while the interactions between TP53BP2 and APP and between GRB2 and PP1 were not detected.
publishDate 2019
dc.date.none.fl_str_mv 2019-12
2019-12-01T00:00:00Z
2021-12-20T00:00:00Z
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dc.language.iso.fl_str_mv eng
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instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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