Norovirus contamination of shellfish from high sanitary quality production areas of Portugal
Autor(a) principal: | |
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Data de Publicação: | 2010 |
Tipo de documento: | Dissertação |
Idioma: | eng |
Título da fonte: | Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
Texto Completo: | http://hdl.handle.net/10348/2036 |
Resumo: | This report aims to: i) provide information on norovirus presence in shellfish from Portugal allowing for a contribution in the risk assessment of virus-related shellfish-borne hazards to the Portuguese bivalve mollusk consumers; ii) screen the North and Central Portugal shellfish beds for the presence of human norovirus in order to characterize mollusk production areas for viral hazards; and iii) evaluate the efficacy of European Regulations on microbiological criteria for bivalve mollusks in Portugal. Between March 2008 and February 2009, a total of 2030 bivalve mollusks were collected from 10 harvesting areas of the North and Centre of Portugal and organized by species and collection sites into 49 batches. The North region collection sites included Minho river estuary, Carreço, Lima river estuary, Cávado river and Douro river estuary. The Center region collection sites included Aguda, Torreira, São Jacinto bay, Costa Nova and Figueira da Foz. All batches were analyzed for Escherichia coli (ISO 16649-3), and tested for noroviruses. All amplified products were sequenced and phylogenetic analysis was performed. The correlation between the official area classification based on the fecal indicator E. coli and the presence of norovirus was evaluated. Norovirus was detected in 14 (41%) of the 34 batches from the North region collection sites, and 4 (26%) of the 15 Center region collection sites batches, revealing for the first time the presence of this virus in bivalve mollusk shellfish from Portugal. Nucleotide sequencing of the RT-PCR products demonstrated that all isolates were identical and belonged to genotype GII.4 2006b. No statistically significant relationship was found between the presence of norovirus and the E. coli levels. Two of the eight batches that were classified as “A class” harvesting areas were positive for norovirus. The fact that two “A class” batches were norovirus positive can represent a potentially serious risk to Public Health, a hazard never before considered in Portugal, since these batches in these conditions are legally allowed for direct consumption and therefore able to be introduced in the food chain with norovirus GII.4 2006b, a strain that has been predominant at a global scale for the past three years (Kanerva et al., 2009; Verhoef et al., 2008) and recently found to be circulating in Portugal (Mesquita & Nascimento, 2009). |
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Norovirus contamination of shellfish from high sanitary quality production areas of PortugalThis report aims to: i) provide information on norovirus presence in shellfish from Portugal allowing for a contribution in the risk assessment of virus-related shellfish-borne hazards to the Portuguese bivalve mollusk consumers; ii) screen the North and Central Portugal shellfish beds for the presence of human norovirus in order to characterize mollusk production areas for viral hazards; and iii) evaluate the efficacy of European Regulations on microbiological criteria for bivalve mollusks in Portugal. Between March 2008 and February 2009, a total of 2030 bivalve mollusks were collected from 10 harvesting areas of the North and Centre of Portugal and organized by species and collection sites into 49 batches. The North region collection sites included Minho river estuary, Carreço, Lima river estuary, Cávado river and Douro river estuary. The Center region collection sites included Aguda, Torreira, São Jacinto bay, Costa Nova and Figueira da Foz. All batches were analyzed for Escherichia coli (ISO 16649-3), and tested for noroviruses. All amplified products were sequenced and phylogenetic analysis was performed. The correlation between the official area classification based on the fecal indicator E. coli and the presence of norovirus was evaluated. Norovirus was detected in 14 (41%) of the 34 batches from the North region collection sites, and 4 (26%) of the 15 Center region collection sites batches, revealing for the first time the presence of this virus in bivalve mollusk shellfish from Portugal. Nucleotide sequencing of the RT-PCR products demonstrated that all isolates were identical and belonged to genotype GII.4 2006b. No statistically significant relationship was found between the presence of norovirus and the E. coli levels. Two of the eight batches that were classified as “A class” harvesting areas were positive for norovirus. The fact that two “A class” batches were norovirus positive can represent a potentially serious risk to Public Health, a hazard never before considered in Portugal, since these batches in these conditions are legally allowed for direct consumption and therefore able to be introduced in the food chain with norovirus GII.4 2006b, a strain that has been predominant at a global scale for the past three years (Kanerva et al., 2009; Verhoef et al., 2008) and recently found to be circulating in Portugal (Mesquita & Nascimento, 2009).O presente estudo teve como objectivos: i) fornecer informações preliminares sobre a eventual presença de norovirus em moluscos bivalves de Portugal contribuindo para uma avaliação do risco para o consumidor; ii) avaliar as áreas de produção de moluscos bivalves do Norte e Centro de Portugal para a presença de norovirus humanos; iii) inferir sobre a eficácia dos Regulamentos Europeus actuais sobre os critérios microbiológicos para os moluscos bivalves no panorama do território Português. Entre Março de 2008 e Fevereiro de 2009, um total de 2030 moluscos bivalves foram amostrados de 10 diferentes áreas de produção do Norte e Centro de Portugal. Os bivalves foram organizados por espécies e áreas de produção constituindo 49 lotes. A região Norte incluiu o estuário do rio Minho, Carreço, estuário do rio Lima, rio Cávado e estuário do rio Douro. A região centro incluiu a Aguda, Torreira, baía de São Jacinto, Costa Nova e Figueira da Foz. Os lotes foram analizados para E. coli (ISO 16649-3) e testados para norovirus. Todos os produtos amplificados foram sequenciados e a análise filogenética foi efectuada. A correlação entre a classificação oficial baseada nos valores do indicador fecal E. coli e a presença de norovirus foi avaliada. Norovirus foram detectados em 14 (41%) dos 34 lotes da região Norte e em 4 (26%) dos 15 lotes da região Centro revelando-se, pela primeira vez, a presença deste vírus em moluscos bivalves de Portugal. A análise das sequências nucleotídicas dos produtos de RT-PCR demonstrou que todos os produtos amplificados eram idênticos (GII.4 2006b). Não foi encontrada relação estatisticamente significativa entre a presença de norovirus e os níveis de E. coli Dois dos oitos lotes classificados como sendo de zona A foram positivos para norovirus. O facto de 2 lotes de zonas de produção A serem positivos para norovirus pode possivelmente, representar um risco sério para a Saúde Pública facto que, até agora, nunca foi considerado em Portugal. Estes lotes estão legalmente autorizados a serem introduzidos na cadeia alimentar apresentando, por isso, o potencial para veicular o norovirus GII.4 2006.b, a estirpe predominante à escala global nos últimos 3 anos (Kanerva et al., 2009; Verhoef et al., 2008) e, recentemente, descoberta a circular em Portugal (Mesquita & Nascimento, 2009).2012-09-03T13:50:18Z2010-01-01T00:00:00Z2010info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesisapplication/pdfhttp://hdl.handle.net/10348/2036engmetadata only accessinfo:eu-repo/semantics/openAccessMesquita, João Rodrigo Gonçalves Goianareponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2024-02-02T12:30:13Zoai:repositorio.utad.pt:10348/2036Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-20T02:00:30.014320Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse |
dc.title.none.fl_str_mv |
Norovirus contamination of shellfish from high sanitary quality production areas of Portugal |
title |
Norovirus contamination of shellfish from high sanitary quality production areas of Portugal |
spellingShingle |
Norovirus contamination of shellfish from high sanitary quality production areas of Portugal Mesquita, João Rodrigo Gonçalves Goiana |
title_short |
Norovirus contamination of shellfish from high sanitary quality production areas of Portugal |
title_full |
Norovirus contamination of shellfish from high sanitary quality production areas of Portugal |
title_fullStr |
Norovirus contamination of shellfish from high sanitary quality production areas of Portugal |
title_full_unstemmed |
Norovirus contamination of shellfish from high sanitary quality production areas of Portugal |
title_sort |
Norovirus contamination of shellfish from high sanitary quality production areas of Portugal |
author |
Mesquita, João Rodrigo Gonçalves Goiana |
author_facet |
Mesquita, João Rodrigo Gonçalves Goiana |
author_role |
author |
dc.contributor.author.fl_str_mv |
Mesquita, João Rodrigo Gonçalves Goiana |
description |
This report aims to: i) provide information on norovirus presence in shellfish from Portugal allowing for a contribution in the risk assessment of virus-related shellfish-borne hazards to the Portuguese bivalve mollusk consumers; ii) screen the North and Central Portugal shellfish beds for the presence of human norovirus in order to characterize mollusk production areas for viral hazards; and iii) evaluate the efficacy of European Regulations on microbiological criteria for bivalve mollusks in Portugal. Between March 2008 and February 2009, a total of 2030 bivalve mollusks were collected from 10 harvesting areas of the North and Centre of Portugal and organized by species and collection sites into 49 batches. The North region collection sites included Minho river estuary, Carreço, Lima river estuary, Cávado river and Douro river estuary. The Center region collection sites included Aguda, Torreira, São Jacinto bay, Costa Nova and Figueira da Foz. All batches were analyzed for Escherichia coli (ISO 16649-3), and tested for noroviruses. All amplified products were sequenced and phylogenetic analysis was performed. The correlation between the official area classification based on the fecal indicator E. coli and the presence of norovirus was evaluated. Norovirus was detected in 14 (41%) of the 34 batches from the North region collection sites, and 4 (26%) of the 15 Center region collection sites batches, revealing for the first time the presence of this virus in bivalve mollusk shellfish from Portugal. Nucleotide sequencing of the RT-PCR products demonstrated that all isolates were identical and belonged to genotype GII.4 2006b. No statistically significant relationship was found between the presence of norovirus and the E. coli levels. Two of the eight batches that were classified as “A class” harvesting areas were positive for norovirus. The fact that two “A class” batches were norovirus positive can represent a potentially serious risk to Public Health, a hazard never before considered in Portugal, since these batches in these conditions are legally allowed for direct consumption and therefore able to be introduced in the food chain with norovirus GII.4 2006b, a strain that has been predominant at a global scale for the past three years (Kanerva et al., 2009; Verhoef et al., 2008) and recently found to be circulating in Portugal (Mesquita & Nascimento, 2009). |
publishDate |
2010 |
dc.date.none.fl_str_mv |
2010-01-01T00:00:00Z 2010 2012-09-03T13:50:18Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
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info:eu-repo/semantics/masterThesis |
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masterThesis |
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publishedVersion |
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http://hdl.handle.net/10348/2036 |
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http://hdl.handle.net/10348/2036 |
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eng |
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eng |
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metadata only access info:eu-repo/semantics/openAccess |
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metadata only access |
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openAccess |
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application/pdf |
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reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação instacron:RCAAP |
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Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
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RCAAP |
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Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
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Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
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Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
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