Genomic characterization of the rotavirus G3P[8] strain in vaccinated children, reveals possible reassortment events between human and animal strains in Manhiça District, Mozambique

Detalhes bibliográficos
Autor(a) principal: Manjate, Filomena
Data de Publicação: 2023
Outros Autores: João, Eva D., Mwangi, Peter, Chirinda, Percina, Mogotsi, Milton, Messa, Augusto, Garrine, Marcelino, Vubil, Delfino, Nobela, Nélio, Nhampossa, Tacilta, Acácio, Sozinho, Tate, Jacqueline E., Parashar, Umesh, Weldegebriel, Goitom, Mwenda, Jason M., Alonso, Pedro L., Cunha, Celso, Nyaga, Martin, Mandomando, Inácio
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10362/154923
Resumo: 870–15 SC; the United States Agency for International Development (USAID), grant number AID-656-F-16-00002 and Fundo Nacional de Investigação (FNI), Moçambique, grant number 245-INV, funded the surveillance of rotavirus and other enteropathogens in children less than 5 years of age in Manhiça, in the context of the implementation of the diarrhoeal disease surveillance platform. The Child Health and Mortality Prevention program (Surveillance), CHAMPS funded by the Bill & Melinda Gates Foundation under Grant OPP1126780, the Instituto de Higiene e Medicina Tropical (IHMT), Universidade Nova de Lisboa, Portugal, the Next Generation Sequencing Unit, and the Division of Virology, Faculty of Health Sciences, University of the Free State, South Africa, supported the whole genome analysis costs. The Calouste Gulbenkian Foundation finances Filomena Manjate’s Ph.D. studies under grant number 234066. CISM receives core funding from the Mozambican government and the “Agencia Española de Cooperacion Internacional para el Desarollo (AECID).” Publisher Copyright: Copyright © 2023 Manjate, João, Mwangi, Chirinda, Mogotsi, Messa, Garrine, Vubil, Nobela, Nhampossa, Acácio, Tate, Parashar, Weldegebriel, Mwenda, Alonso, Cunha, Nyaga and Mandomando.
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spelling Genomic characterization of the rotavirus G3P[8] strain in vaccinated children, reveals possible reassortment events between human and animal strains in Manhiça District, Mozambiquechildren <5 yearshuman G3P[8] strainsmoderate-to-severe diarrheareassortmentsrotavirus group Awhole-genome sequencingRJ101 Child Health. Child health servicesQR355 VirologyMicrobiologyMicrobiology (medical)GastroenterologyInfectious DiseasesPediatrics, Perinatology, and Child HealthBiochemistry, Genetics and Molecular Biology (miscellaneous)VirologySDG 3 - Good Health and Well-being870–15 SC; the United States Agency for International Development (USAID), grant number AID-656-F-16-00002 and Fundo Nacional de Investigação (FNI), Moçambique, grant number 245-INV, funded the surveillance of rotavirus and other enteropathogens in children less than 5 years of age in Manhiça, in the context of the implementation of the diarrhoeal disease surveillance platform. The Child Health and Mortality Prevention program (Surveillance), CHAMPS funded by the Bill & Melinda Gates Foundation under Grant OPP1126780, the Instituto de Higiene e Medicina Tropical (IHMT), Universidade Nova de Lisboa, Portugal, the Next Generation Sequencing Unit, and the Division of Virology, Faculty of Health Sciences, University of the Free State, South Africa, supported the whole genome analysis costs. The Calouste Gulbenkian Foundation finances Filomena Manjate’s Ph.D. studies under grant number 234066. CISM receives core funding from the Mozambican government and the “Agencia Española de Cooperacion Internacional para el Desarollo (AECID).” Publisher Copyright: Copyright © 2023 Manjate, João, Mwangi, Chirinda, Mogotsi, Messa, Garrine, Vubil, Nobela, Nhampossa, Acácio, Tate, Parashar, Weldegebriel, Mwenda, Alonso, Cunha, Nyaga and Mandomando.Mozambique introduced the rotavirus vaccine (Rotarix®; GlaxoSmithKline Biologicals, Rixensart, Belgium) in 2015, and since then, the Centro de Investigação em Saúde de Manhiça has been monitoring its impact on rotavirus-associated diarrhea and the trend of circulating strains, where G3P[8] was reported as the predominant strain after the vaccine introduction. Genotype G3 is among the most commonly detected Rotavirus strains in humans and animals, and herein, we report on the whole genome constellation of G3P[8] detected in two children (aged 18 months old) hospitalized with moderate-to-severe diarrhea at the Manhiça District Hospital. The two strains had a typical Wa-like genome constellation (I1-R1-C1-M1-A1-N1-T1-E1-H1) and shared 100% nucleotide (nt) and amino acid (aa) identities in 10 gene segments, except for VP6. Phylogenetic analysis demonstrated that genome segments encoding VP7, VP6, VP1, NSP3, and NSP4 of the two strains clustered most closely with porcine, bovine, and equine strains with identities ranging from 86.9–99.9% nt and 97.2–100% aa. Moreover, they consistently formed distinct clusters with some G1P[8], G3P[8], G9P[8], G12P[6], and G12P[8] strains circulating from 2012 to 2019 in Africa (Mozambique, Kenya, Rwanda, and Malawi) and Asia (Japan, China, and India) in genome segments encoding six proteins (VP2, VP3, NSP1-NSP2, NSP5/6). The identification of segments exhibiting the closest relationships with animal strains shows significant diversity of rotavirus and suggests the possible occurrence of reassortment events between human and animal strains. This demonstrates the importance of applying next-generation sequencing to monitor and understand the evolutionary changes of strains and evaluate the impact of vaccines on strain diversity.TB, HIV and opportunistic diseases and pathogens (THOP)Global Health and Tropical Medicine (GHTM)Instituto de Higiene e Medicina Tropical (IHMT)RUNManjate, FilomenaJoão, Eva D.Mwangi, PeterChirinda, PercinaMogotsi, MiltonMessa, AugustoGarrine, MarcelinoVubil, DelfinoNobela, NélioNhampossa, TaciltaAcácio, SozinhoTate, Jacqueline E.Parashar, UmeshWeldegebriel, GoitomMwenda, Jason M.Alonso, Pedro L.Cunha, CelsoNyaga, MartinMandomando, Inácio2023-07-06T22:14:55Z20232023-01-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article12application/pdfhttp://hdl.handle.net/10362/154923eng1664-302XPURE: 65013190https://doi.org/10.3389/fmicb.2023.1193094info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2024-03-11T05:37:22Zoai:run.unl.pt:10362/154923Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-20T03:55:50.871894Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Genomic characterization of the rotavirus G3P[8] strain in vaccinated children, reveals possible reassortment events between human and animal strains in Manhiça District, Mozambique
title Genomic characterization of the rotavirus G3P[8] strain in vaccinated children, reveals possible reassortment events between human and animal strains in Manhiça District, Mozambique
spellingShingle Genomic characterization of the rotavirus G3P[8] strain in vaccinated children, reveals possible reassortment events between human and animal strains in Manhiça District, Mozambique
Manjate, Filomena
children <5 years
human G3P[8] strains
moderate-to-severe diarrhea
reassortments
rotavirus group A
whole-genome sequencing
RJ101 Child Health. Child health services
QR355 Virology
Microbiology
Microbiology (medical)
Gastroenterology
Infectious Diseases
Pediatrics, Perinatology, and Child Health
Biochemistry, Genetics and Molecular Biology (miscellaneous)
Virology
SDG 3 - Good Health and Well-being
title_short Genomic characterization of the rotavirus G3P[8] strain in vaccinated children, reveals possible reassortment events between human and animal strains in Manhiça District, Mozambique
title_full Genomic characterization of the rotavirus G3P[8] strain in vaccinated children, reveals possible reassortment events between human and animal strains in Manhiça District, Mozambique
title_fullStr Genomic characterization of the rotavirus G3P[8] strain in vaccinated children, reveals possible reassortment events between human and animal strains in Manhiça District, Mozambique
title_full_unstemmed Genomic characterization of the rotavirus G3P[8] strain in vaccinated children, reveals possible reassortment events between human and animal strains in Manhiça District, Mozambique
title_sort Genomic characterization of the rotavirus G3P[8] strain in vaccinated children, reveals possible reassortment events between human and animal strains in Manhiça District, Mozambique
author Manjate, Filomena
author_facet Manjate, Filomena
João, Eva D.
Mwangi, Peter
Chirinda, Percina
Mogotsi, Milton
Messa, Augusto
Garrine, Marcelino
Vubil, Delfino
Nobela, Nélio
Nhampossa, Tacilta
Acácio, Sozinho
Tate, Jacqueline E.
Parashar, Umesh
Weldegebriel, Goitom
Mwenda, Jason M.
Alonso, Pedro L.
Cunha, Celso
Nyaga, Martin
Mandomando, Inácio
author_role author
author2 João, Eva D.
Mwangi, Peter
Chirinda, Percina
Mogotsi, Milton
Messa, Augusto
Garrine, Marcelino
Vubil, Delfino
Nobela, Nélio
Nhampossa, Tacilta
Acácio, Sozinho
Tate, Jacqueline E.
Parashar, Umesh
Weldegebriel, Goitom
Mwenda, Jason M.
Alonso, Pedro L.
Cunha, Celso
Nyaga, Martin
Mandomando, Inácio
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv TB, HIV and opportunistic diseases and pathogens (THOP)
Global Health and Tropical Medicine (GHTM)
Instituto de Higiene e Medicina Tropical (IHMT)
RUN
dc.contributor.author.fl_str_mv Manjate, Filomena
João, Eva D.
Mwangi, Peter
Chirinda, Percina
Mogotsi, Milton
Messa, Augusto
Garrine, Marcelino
Vubil, Delfino
Nobela, Nélio
Nhampossa, Tacilta
Acácio, Sozinho
Tate, Jacqueline E.
Parashar, Umesh
Weldegebriel, Goitom
Mwenda, Jason M.
Alonso, Pedro L.
Cunha, Celso
Nyaga, Martin
Mandomando, Inácio
dc.subject.por.fl_str_mv children <5 years
human G3P[8] strains
moderate-to-severe diarrhea
reassortments
rotavirus group A
whole-genome sequencing
RJ101 Child Health. Child health services
QR355 Virology
Microbiology
Microbiology (medical)
Gastroenterology
Infectious Diseases
Pediatrics, Perinatology, and Child Health
Biochemistry, Genetics and Molecular Biology (miscellaneous)
Virology
SDG 3 - Good Health and Well-being
topic children <5 years
human G3P[8] strains
moderate-to-severe diarrhea
reassortments
rotavirus group A
whole-genome sequencing
RJ101 Child Health. Child health services
QR355 Virology
Microbiology
Microbiology (medical)
Gastroenterology
Infectious Diseases
Pediatrics, Perinatology, and Child Health
Biochemistry, Genetics and Molecular Biology (miscellaneous)
Virology
SDG 3 - Good Health and Well-being
description 870–15 SC; the United States Agency for International Development (USAID), grant number AID-656-F-16-00002 and Fundo Nacional de Investigação (FNI), Moçambique, grant number 245-INV, funded the surveillance of rotavirus and other enteropathogens in children less than 5 years of age in Manhiça, in the context of the implementation of the diarrhoeal disease surveillance platform. The Child Health and Mortality Prevention program (Surveillance), CHAMPS funded by the Bill & Melinda Gates Foundation under Grant OPP1126780, the Instituto de Higiene e Medicina Tropical (IHMT), Universidade Nova de Lisboa, Portugal, the Next Generation Sequencing Unit, and the Division of Virology, Faculty of Health Sciences, University of the Free State, South Africa, supported the whole genome analysis costs. The Calouste Gulbenkian Foundation finances Filomena Manjate’s Ph.D. studies under grant number 234066. CISM receives core funding from the Mozambican government and the “Agencia Española de Cooperacion Internacional para el Desarollo (AECID).” Publisher Copyright: Copyright © 2023 Manjate, João, Mwangi, Chirinda, Mogotsi, Messa, Garrine, Vubil, Nobela, Nhampossa, Acácio, Tate, Parashar, Weldegebriel, Mwenda, Alonso, Cunha, Nyaga and Mandomando.
publishDate 2023
dc.date.none.fl_str_mv 2023-07-06T22:14:55Z
2023
2023-01-01T00:00:00Z
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dc.language.iso.fl_str_mv eng
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PURE: 65013190
https://doi.org/10.3389/fmicb.2023.1193094
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