Laser Capture Microdissection Protocol for Xylem Tissues of Woody Plants

Detalhes bibliográficos
Autor(a) principal: Blokhina, Olga
Data de Publicação: 2017
Outros Autores: Valerio, Concetta, Sokołowska, Katarzyna, Zhao, Lei, Kärkönen, Anna, Niittylä, Totte, Fagerstedt, Kurt
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10400.7/729
Resumo: Laser capture microdissection (LCM) enables precise dissection and collection of individual cell types from complex tissues. When applied to plant cells, and especially to woody tissues, LCM requires extensive optimization to overcome such factors as rigid cell walls, large central vacuoles, intercellular spaces, and technical issues with thickness and flatness of the sections. Here we present an optimized protocol for the laser-assisted microdissection of developing xylem from mature trees: a gymnosperm (Norway spruce, Picea abies) and an angiosperm (aspen, Populus tremula) tree. Different cell types of spruce and aspen wood (i.e., ray cells, tracheary elements, and fibers) were successfully microdissected from tangential, cross and radial cryosections of the current year's growth ring. Two approaches were applied to achieve satisfactory flatness and anatomical integrity of the spruce and aspen specimens. The commonly used membrane slides were ineffective as a mounting surface for the wood cryosections. Instead, in the present protocol we use glass slides, and introduce a glass slide sandwich assembly for the preparation of aspen sections. To ascertain that not only the anatomical integrity of the plant tissue, but also the molecular features were not compromised during the whole LCM procedure, good quality total RNA could be extracted from the microdissected cells. This showed the efficiency of the protocol and established that our methodology can be integrated in transcriptome analyses to elucidate cell-specific molecular events regulating wood formation in trees.
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spelling Laser Capture Microdissection Protocol for Xylem Tissues of Woody Plantscryosectionlaser capture microdissectionray cellsRNA integritytracheidsxylem fibersLaser capture microdissection (LCM) enables precise dissection and collection of individual cell types from complex tissues. When applied to plant cells, and especially to woody tissues, LCM requires extensive optimization to overcome such factors as rigid cell walls, large central vacuoles, intercellular spaces, and technical issues with thickness and flatness of the sections. Here we present an optimized protocol for the laser-assisted microdissection of developing xylem from mature trees: a gymnosperm (Norway spruce, Picea abies) and an angiosperm (aspen, Populus tremula) tree. Different cell types of spruce and aspen wood (i.e., ray cells, tracheary elements, and fibers) were successfully microdissected from tangential, cross and radial cryosections of the current year's growth ring. Two approaches were applied to achieve satisfactory flatness and anatomical integrity of the spruce and aspen specimens. The commonly used membrane slides were ineffective as a mounting surface for the wood cryosections. Instead, in the present protocol we use glass slides, and introduce a glass slide sandwich assembly for the preparation of aspen sections. To ascertain that not only the anatomical integrity of the plant tissue, but also the molecular features were not compromised during the whole LCM procedure, good quality total RNA could be extracted from the microdissected cells. This showed the efficiency of the protocol and established that our methodology can be integrated in transcriptome analyses to elucidate cell-specific molecular events regulating wood formation in trees.Academy of Finland grants: (#251390, #283245); Bio4Energy (Swedish Programme for Renewable Energy); Kempe Foundation fellowship.Frontiers MediaARCABlokhina, OlgaValerio, ConcettaSokołowska, KatarzynaZhao, LeiKärkönen, AnnaNiittylä, TotteFagerstedt, Kurt2017-01-23T15:24:10Z2017-01-042017-01-04T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10400.7/729engBlokhina O, Valerio C, Sokołowska K, Zhao L, Kärkönen A, Niittylä T and Fagerstedt K (2017) Laser Capture Microdissection Protocol for Xylem Tissues of Woody Plants. Front. Plant Sci. 7:1965. doi: 10.3389/fpls.2016.0196510.3389/fpls.2016.01965info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2022-11-29T14:35:07Zoai:arca.igc.gulbenkian.pt:10400.7/729Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T16:11:57.588616Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Laser Capture Microdissection Protocol for Xylem Tissues of Woody Plants
title Laser Capture Microdissection Protocol for Xylem Tissues of Woody Plants
spellingShingle Laser Capture Microdissection Protocol for Xylem Tissues of Woody Plants
Blokhina, Olga
cryosection
laser capture microdissection
ray cells
RNA integrity
tracheids
xylem fibers
title_short Laser Capture Microdissection Protocol for Xylem Tissues of Woody Plants
title_full Laser Capture Microdissection Protocol for Xylem Tissues of Woody Plants
title_fullStr Laser Capture Microdissection Protocol for Xylem Tissues of Woody Plants
title_full_unstemmed Laser Capture Microdissection Protocol for Xylem Tissues of Woody Plants
title_sort Laser Capture Microdissection Protocol for Xylem Tissues of Woody Plants
author Blokhina, Olga
author_facet Blokhina, Olga
Valerio, Concetta
Sokołowska, Katarzyna
Zhao, Lei
Kärkönen, Anna
Niittylä, Totte
Fagerstedt, Kurt
author_role author
author2 Valerio, Concetta
Sokołowska, Katarzyna
Zhao, Lei
Kärkönen, Anna
Niittylä, Totte
Fagerstedt, Kurt
author2_role author
author
author
author
author
author
dc.contributor.none.fl_str_mv ARCA
dc.contributor.author.fl_str_mv Blokhina, Olga
Valerio, Concetta
Sokołowska, Katarzyna
Zhao, Lei
Kärkönen, Anna
Niittylä, Totte
Fagerstedt, Kurt
dc.subject.por.fl_str_mv cryosection
laser capture microdissection
ray cells
RNA integrity
tracheids
xylem fibers
topic cryosection
laser capture microdissection
ray cells
RNA integrity
tracheids
xylem fibers
description Laser capture microdissection (LCM) enables precise dissection and collection of individual cell types from complex tissues. When applied to plant cells, and especially to woody tissues, LCM requires extensive optimization to overcome such factors as rigid cell walls, large central vacuoles, intercellular spaces, and technical issues with thickness and flatness of the sections. Here we present an optimized protocol for the laser-assisted microdissection of developing xylem from mature trees: a gymnosperm (Norway spruce, Picea abies) and an angiosperm (aspen, Populus tremula) tree. Different cell types of spruce and aspen wood (i.e., ray cells, tracheary elements, and fibers) were successfully microdissected from tangential, cross and radial cryosections of the current year's growth ring. Two approaches were applied to achieve satisfactory flatness and anatomical integrity of the spruce and aspen specimens. The commonly used membrane slides were ineffective as a mounting surface for the wood cryosections. Instead, in the present protocol we use glass slides, and introduce a glass slide sandwich assembly for the preparation of aspen sections. To ascertain that not only the anatomical integrity of the plant tissue, but also the molecular features were not compromised during the whole LCM procedure, good quality total RNA could be extracted from the microdissected cells. This showed the efficiency of the protocol and established that our methodology can be integrated in transcriptome analyses to elucidate cell-specific molecular events regulating wood formation in trees.
publishDate 2017
dc.date.none.fl_str_mv 2017-01-23T15:24:10Z
2017-01-04
2017-01-04T00:00:00Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10400.7/729
url http://hdl.handle.net/10400.7/729
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Blokhina O, Valerio C, Sokołowska K, Zhao L, Kärkönen A, Niittylä T and Fagerstedt K (2017) Laser Capture Microdissection Protocol for Xylem Tissues of Woody Plants. Front. Plant Sci. 7:1965. doi: 10.3389/fpls.2016.01965
10.3389/fpls.2016.01965
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Frontiers Media
publisher.none.fl_str_mv Frontiers Media
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron:RCAAP
instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron_str RCAAP
institution RCAAP
reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
repository.mail.fl_str_mv
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