Laser Capture Microdissection Protocol for Xylem Tissues of Woody Plants
Autor(a) principal: | |
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Data de Publicação: | 2017 |
Outros Autores: | , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
Texto Completo: | http://hdl.handle.net/10400.7/729 |
Resumo: | Laser capture microdissection (LCM) enables precise dissection and collection of individual cell types from complex tissues. When applied to plant cells, and especially to woody tissues, LCM requires extensive optimization to overcome such factors as rigid cell walls, large central vacuoles, intercellular spaces, and technical issues with thickness and flatness of the sections. Here we present an optimized protocol for the laser-assisted microdissection of developing xylem from mature trees: a gymnosperm (Norway spruce, Picea abies) and an angiosperm (aspen, Populus tremula) tree. Different cell types of spruce and aspen wood (i.e., ray cells, tracheary elements, and fibers) were successfully microdissected from tangential, cross and radial cryosections of the current year's growth ring. Two approaches were applied to achieve satisfactory flatness and anatomical integrity of the spruce and aspen specimens. The commonly used membrane slides were ineffective as a mounting surface for the wood cryosections. Instead, in the present protocol we use glass slides, and introduce a glass slide sandwich assembly for the preparation of aspen sections. To ascertain that not only the anatomical integrity of the plant tissue, but also the molecular features were not compromised during the whole LCM procedure, good quality total RNA could be extracted from the microdissected cells. This showed the efficiency of the protocol and established that our methodology can be integrated in transcriptome analyses to elucidate cell-specific molecular events regulating wood formation in trees. |
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Laser Capture Microdissection Protocol for Xylem Tissues of Woody Plantscryosectionlaser capture microdissectionray cellsRNA integritytracheidsxylem fibersLaser capture microdissection (LCM) enables precise dissection and collection of individual cell types from complex tissues. When applied to plant cells, and especially to woody tissues, LCM requires extensive optimization to overcome such factors as rigid cell walls, large central vacuoles, intercellular spaces, and technical issues with thickness and flatness of the sections. Here we present an optimized protocol for the laser-assisted microdissection of developing xylem from mature trees: a gymnosperm (Norway spruce, Picea abies) and an angiosperm (aspen, Populus tremula) tree. Different cell types of spruce and aspen wood (i.e., ray cells, tracheary elements, and fibers) were successfully microdissected from tangential, cross and radial cryosections of the current year's growth ring. Two approaches were applied to achieve satisfactory flatness and anatomical integrity of the spruce and aspen specimens. The commonly used membrane slides were ineffective as a mounting surface for the wood cryosections. Instead, in the present protocol we use glass slides, and introduce a glass slide sandwich assembly for the preparation of aspen sections. To ascertain that not only the anatomical integrity of the plant tissue, but also the molecular features were not compromised during the whole LCM procedure, good quality total RNA could be extracted from the microdissected cells. This showed the efficiency of the protocol and established that our methodology can be integrated in transcriptome analyses to elucidate cell-specific molecular events regulating wood formation in trees.Academy of Finland grants: (#251390, #283245); Bio4Energy (Swedish Programme for Renewable Energy); Kempe Foundation fellowship.Frontiers MediaARCABlokhina, OlgaValerio, ConcettaSokołowska, KatarzynaZhao, LeiKärkönen, AnnaNiittylä, TotteFagerstedt, Kurt2017-01-23T15:24:10Z2017-01-042017-01-04T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10400.7/729engBlokhina O, Valerio C, Sokołowska K, Zhao L, Kärkönen A, Niittylä T and Fagerstedt K (2017) Laser Capture Microdissection Protocol for Xylem Tissues of Woody Plants. Front. Plant Sci. 7:1965. doi: 10.3389/fpls.2016.0196510.3389/fpls.2016.01965info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2022-11-29T14:35:07Zoai:arca.igc.gulbenkian.pt:10400.7/729Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T16:11:57.588616Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse |
dc.title.none.fl_str_mv |
Laser Capture Microdissection Protocol for Xylem Tissues of Woody Plants |
title |
Laser Capture Microdissection Protocol for Xylem Tissues of Woody Plants |
spellingShingle |
Laser Capture Microdissection Protocol for Xylem Tissues of Woody Plants Blokhina, Olga cryosection laser capture microdissection ray cells RNA integrity tracheids xylem fibers |
title_short |
Laser Capture Microdissection Protocol for Xylem Tissues of Woody Plants |
title_full |
Laser Capture Microdissection Protocol for Xylem Tissues of Woody Plants |
title_fullStr |
Laser Capture Microdissection Protocol for Xylem Tissues of Woody Plants |
title_full_unstemmed |
Laser Capture Microdissection Protocol for Xylem Tissues of Woody Plants |
title_sort |
Laser Capture Microdissection Protocol for Xylem Tissues of Woody Plants |
author |
Blokhina, Olga |
author_facet |
Blokhina, Olga Valerio, Concetta Sokołowska, Katarzyna Zhao, Lei Kärkönen, Anna Niittylä, Totte Fagerstedt, Kurt |
author_role |
author |
author2 |
Valerio, Concetta Sokołowska, Katarzyna Zhao, Lei Kärkönen, Anna Niittylä, Totte Fagerstedt, Kurt |
author2_role |
author author author author author author |
dc.contributor.none.fl_str_mv |
ARCA |
dc.contributor.author.fl_str_mv |
Blokhina, Olga Valerio, Concetta Sokołowska, Katarzyna Zhao, Lei Kärkönen, Anna Niittylä, Totte Fagerstedt, Kurt |
dc.subject.por.fl_str_mv |
cryosection laser capture microdissection ray cells RNA integrity tracheids xylem fibers |
topic |
cryosection laser capture microdissection ray cells RNA integrity tracheids xylem fibers |
description |
Laser capture microdissection (LCM) enables precise dissection and collection of individual cell types from complex tissues. When applied to plant cells, and especially to woody tissues, LCM requires extensive optimization to overcome such factors as rigid cell walls, large central vacuoles, intercellular spaces, and technical issues with thickness and flatness of the sections. Here we present an optimized protocol for the laser-assisted microdissection of developing xylem from mature trees: a gymnosperm (Norway spruce, Picea abies) and an angiosperm (aspen, Populus tremula) tree. Different cell types of spruce and aspen wood (i.e., ray cells, tracheary elements, and fibers) were successfully microdissected from tangential, cross and radial cryosections of the current year's growth ring. Two approaches were applied to achieve satisfactory flatness and anatomical integrity of the spruce and aspen specimens. The commonly used membrane slides were ineffective as a mounting surface for the wood cryosections. Instead, in the present protocol we use glass slides, and introduce a glass slide sandwich assembly for the preparation of aspen sections. To ascertain that not only the anatomical integrity of the plant tissue, but also the molecular features were not compromised during the whole LCM procedure, good quality total RNA could be extracted from the microdissected cells. This showed the efficiency of the protocol and established that our methodology can be integrated in transcriptome analyses to elucidate cell-specific molecular events regulating wood formation in trees. |
publishDate |
2017 |
dc.date.none.fl_str_mv |
2017-01-23T15:24:10Z 2017-01-04 2017-01-04T00:00:00Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://hdl.handle.net/10400.7/729 |
url |
http://hdl.handle.net/10400.7/729 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Blokhina O, Valerio C, Sokołowska K, Zhao L, Kärkönen A, Niittylä T and Fagerstedt K (2017) Laser Capture Microdissection Protocol for Xylem Tissues of Woody Plants. Front. Plant Sci. 7:1965. doi: 10.3389/fpls.2016.01965 10.3389/fpls.2016.01965 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.publisher.none.fl_str_mv |
Frontiers Media |
publisher.none.fl_str_mv |
Frontiers Media |
dc.source.none.fl_str_mv |
reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação instacron:RCAAP |
instname_str |
Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
instacron_str |
RCAAP |
institution |
RCAAP |
reponame_str |
Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
collection |
Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
repository.name.fl_str_mv |
Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
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1799130574751793152 |