A SHORTENED RNA-FISH PROTOCOL FOR ANALYZING ARTWORKS’ MICROCOLONIZERS

Detalhes bibliográficos
Autor(a) principal: González-Pérez, Marina
Data de Publicação: 2017
Outros Autores: de Oliveira Baptista, Sara Margarida, Pereira, António, Candeias, António, Caldeira, Ana Teresa
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10174/19896
Resumo: Microorganisms are involved in the deterioration of Cultural Heritage. Thus, there is a need to enhance the techniques used for their detection and identification. RNA Fluorescent In Situ Hybridization (RNA-FISH) has been successfully applied for phylogenetic identification of the viable components of the microbial communities colonizing artworks both in situ and ex situ. Until recently, it was time-consuming, taking not less than 6 h for the analysis. We have developed an RNA-FISH in suspension protocol that allowed ex situ analysis of microorganisms involved in artworks’ biodeterioration in 5 h. In this work, three modified protocols, involving microwave heating, were evaluated for further shortening two of the four main critical steps in RNA-FISH: hybridization and washing. The original and modified protocols were applied in cellular suspensions of bacteria and yeast isolates. The results obtained were evaluated and compared in terms of detectability and specificity of the signals detected by epifluorescence microscopy. One of the methods tested showed good and specific FISH signals for all the microorganisms selected and did not produce signals evidencing non-specific or fixation-induced fluorescence. This 3 h protocol allows a remarkable reduction of the time usually required for performing RNA-FISH analysis in Cultural Heritage samples. Thus, a rapid alternative for analyzing yeast and bacteria cells colonizing artworks’ surfaces by RNA-FISH is presented in this work.
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spelling A SHORTENED RNA-FISH PROTOCOL FOR ANALYZING ARTWORKS’ MICROCOLONIZERSFluorescence In Situ HybridizationMicroorganismsBiodeteriorationCultural HeritageMicroorganisms are involved in the deterioration of Cultural Heritage. Thus, there is a need to enhance the techniques used for their detection and identification. RNA Fluorescent In Situ Hybridization (RNA-FISH) has been successfully applied for phylogenetic identification of the viable components of the microbial communities colonizing artworks both in situ and ex situ. Until recently, it was time-consuming, taking not less than 6 h for the analysis. We have developed an RNA-FISH in suspension protocol that allowed ex situ analysis of microorganisms involved in artworks’ biodeterioration in 5 h. In this work, three modified protocols, involving microwave heating, were evaluated for further shortening two of the four main critical steps in RNA-FISH: hybridization and washing. The original and modified protocols were applied in cellular suspensions of bacteria and yeast isolates. The results obtained were evaluated and compared in terms of detectability and specificity of the signals detected by epifluorescence microscopy. One of the methods tested showed good and specific FISH signals for all the microorganisms selected and did not produce signals evidencing non-specific or fixation-induced fluorescence. This 3 h protocol allows a remarkable reduction of the time usually required for performing RNA-FISH analysis in Cultural Heritage samples. Thus, a rapid alternative for analyzing yeast and bacteria cells colonizing artworks’ surfaces by RNA-FISH is presented in this work.YILDIZ TECHNICAL UNIVERSITY’S TECHNOPARK COMPANY OF PROMECH TEKNOLOJİ VE BİLİŞİM SİSTEMLERİ SANAYİ LTD. ŞTİ.2017-01-19T16:34:26Z2017-01-192017-01-04T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://hdl.handle.net/10174/19896http://hdl.handle.net/10174/19896engGonzález-Pérez, M; de Oliveira Baptista, S.M.; Pereira, A; Candeias, A.; Caldeira, A.T.; A shortened RNA-FISH protocol for analyzing artworks' microcolonizers.Istanbul International Conference On Progress In Applied Science 2017 (ICPAS 2017), p. 136-140. ISBN 978-605-9546-02-7. Istambul, Turkey, January 4-6, 2017.978-605-9546-02-7marinagp@uevora.ptsara.margot.31@gmail.comamlp@uevora.ptcandeias@uevora.ptatc@uevora.pt365González-Pérez, Marinade Oliveira Baptista, Sara MargaridaPereira, AntónioCandeias, AntónioCaldeira, Ana Teresainfo:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2024-01-03T19:09:09Zoai:dspace.uevora.pt:10174/19896Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-20T01:11:22.474584Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv A SHORTENED RNA-FISH PROTOCOL FOR ANALYZING ARTWORKS’ MICROCOLONIZERS
title A SHORTENED RNA-FISH PROTOCOL FOR ANALYZING ARTWORKS’ MICROCOLONIZERS
spellingShingle A SHORTENED RNA-FISH PROTOCOL FOR ANALYZING ARTWORKS’ MICROCOLONIZERS
González-Pérez, Marina
Fluorescence In Situ Hybridization
Microorganisms
Biodeterioration
Cultural Heritage
title_short A SHORTENED RNA-FISH PROTOCOL FOR ANALYZING ARTWORKS’ MICROCOLONIZERS
title_full A SHORTENED RNA-FISH PROTOCOL FOR ANALYZING ARTWORKS’ MICROCOLONIZERS
title_fullStr A SHORTENED RNA-FISH PROTOCOL FOR ANALYZING ARTWORKS’ MICROCOLONIZERS
title_full_unstemmed A SHORTENED RNA-FISH PROTOCOL FOR ANALYZING ARTWORKS’ MICROCOLONIZERS
title_sort A SHORTENED RNA-FISH PROTOCOL FOR ANALYZING ARTWORKS’ MICROCOLONIZERS
author González-Pérez, Marina
author_facet González-Pérez, Marina
de Oliveira Baptista, Sara Margarida
Pereira, António
Candeias, António
Caldeira, Ana Teresa
author_role author
author2 de Oliveira Baptista, Sara Margarida
Pereira, António
Candeias, António
Caldeira, Ana Teresa
author2_role author
author
author
author
dc.contributor.author.fl_str_mv González-Pérez, Marina
de Oliveira Baptista, Sara Margarida
Pereira, António
Candeias, António
Caldeira, Ana Teresa
dc.subject.por.fl_str_mv Fluorescence In Situ Hybridization
Microorganisms
Biodeterioration
Cultural Heritage
topic Fluorescence In Situ Hybridization
Microorganisms
Biodeterioration
Cultural Heritage
description Microorganisms are involved in the deterioration of Cultural Heritage. Thus, there is a need to enhance the techniques used for their detection and identification. RNA Fluorescent In Situ Hybridization (RNA-FISH) has been successfully applied for phylogenetic identification of the viable components of the microbial communities colonizing artworks both in situ and ex situ. Until recently, it was time-consuming, taking not less than 6 h for the analysis. We have developed an RNA-FISH in suspension protocol that allowed ex situ analysis of microorganisms involved in artworks’ biodeterioration in 5 h. In this work, three modified protocols, involving microwave heating, were evaluated for further shortening two of the four main critical steps in RNA-FISH: hybridization and washing. The original and modified protocols were applied in cellular suspensions of bacteria and yeast isolates. The results obtained were evaluated and compared in terms of detectability and specificity of the signals detected by epifluorescence microscopy. One of the methods tested showed good and specific FISH signals for all the microorganisms selected and did not produce signals evidencing non-specific or fixation-induced fluorescence. This 3 h protocol allows a remarkable reduction of the time usually required for performing RNA-FISH analysis in Cultural Heritage samples. Thus, a rapid alternative for analyzing yeast and bacteria cells colonizing artworks’ surfaces by RNA-FISH is presented in this work.
publishDate 2017
dc.date.none.fl_str_mv 2017-01-19T16:34:26Z
2017-01-19
2017-01-04T00:00:00Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10174/19896
http://hdl.handle.net/10174/19896
url http://hdl.handle.net/10174/19896
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv González-Pérez, M; de Oliveira Baptista, S.M.; Pereira, A; Candeias, A.; Caldeira, A.T.; A shortened RNA-FISH protocol for analyzing artworks' microcolonizers.Istanbul International Conference On Progress In Applied Science 2017 (ICPAS 2017), p. 136-140. ISBN 978-605-9546-02-7. Istambul, Turkey, January 4-6, 2017.
978-605-9546-02-7
marinagp@uevora.pt
sara.margot.31@gmail.com
amlp@uevora.pt
candeias@uevora.pt
atc@uevora.pt
365
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv YILDIZ TECHNICAL UNIVERSITY’S TECHNOPARK COMPANY OF PROMECH TEKNOLOJİ VE BİLİŞİM SİSTEMLERİ SANAYİ LTD. ŞTİ.
publisher.none.fl_str_mv YILDIZ TECHNICAL UNIVERSITY’S TECHNOPARK COMPANY OF PROMECH TEKNOLOJİ VE BİLİŞİM SİSTEMLERİ SANAYİ LTD. ŞTİ.
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
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collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
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