Shortcomings of phylogenetic studies on recent radiated insular groups: a meta-analysis using Cabo Verde biodiversity

Detalhes bibliográficos
Autor(a) principal: Romeiras, Maria
Data de Publicação: 2019
Outros Autores: Pena, Ana Rita, Menezes, Tiago, Vasconcelos, Raquel, Monteiro, Filipa, Paulo, Octávio S., Moura, Mónica
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10400.5/18087
Resumo: Review
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spelling Shortcomings of phylogenetic studies on recent radiated insular groups: a meta-analysis using Cabo Verde biodiversityMacaronesiaendemic speciesevolutionphylogenetic inferencedivergence timesbioinformaticsphylogenomicsReviewOver the previous decades, numerous studies focused on how oceanic islands have contributed to determine the phylogenetic relationships and times of origin and diversification of di erent endemic lineages. The Macaronesian Islands (i.e., Azores, Madeira, Selvagens, Canaries, and Cabo Verde), harbour biotas with exceptionally high levels of endemism. Within the region, the vascular plants and reptiles constitute two of the most important radiations. In this study we compare relevant published phylogenetic data and diversification rates retrieved within Cabo Verde endemic lineages and discuss the importance of choosing appropriate phylogeny-based methods to investigate diversification dynamics on islands. From this selective literature-based review, we summarize the software packages used in Macaronesian studies and discuss their adequacy considering the published data to obtain well-supported phylogenies in the target groups. We further debate the importance of Next Generation Sequencing (NGS), to investigate the evolutionary processes of diversification in the Macaronesian Islands. Analysis of genomic data provides phylogenetic resolution for rapidly evolving species radiations, suggesting a great potential to improve the phylogenetic signal and divergence time estimates in insular lineages. The most important Macaronesian reptile radiations provide good case-studies to compare classical phylogenetic methods with new tools, such as phylogenomics, revealing a high value for research on this hotspot areaMDPIRepositório da Universidade de LisboaRomeiras, MariaPena, Ana RitaMenezes, TiagoVasconcelos, RaquelMonteiro, FilipaPaulo, Octávio S.Moura, Mónica2019-07-02T12:36:12Z20192019-01-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10400.5/18087engInt. J. Mol. Sci. 2019, 20, 278210.3390/ijms20112782info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-03-06T14:47:42Zoai:www.repository.utl.pt:10400.5/18087Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T17:03:12.132104Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Shortcomings of phylogenetic studies on recent radiated insular groups: a meta-analysis using Cabo Verde biodiversity
title Shortcomings of phylogenetic studies on recent radiated insular groups: a meta-analysis using Cabo Verde biodiversity
spellingShingle Shortcomings of phylogenetic studies on recent radiated insular groups: a meta-analysis using Cabo Verde biodiversity
Romeiras, Maria
Macaronesia
endemic species
evolution
phylogenetic inference
divergence times
bioinformatics
phylogenomics
title_short Shortcomings of phylogenetic studies on recent radiated insular groups: a meta-analysis using Cabo Verde biodiversity
title_full Shortcomings of phylogenetic studies on recent radiated insular groups: a meta-analysis using Cabo Verde biodiversity
title_fullStr Shortcomings of phylogenetic studies on recent radiated insular groups: a meta-analysis using Cabo Verde biodiversity
title_full_unstemmed Shortcomings of phylogenetic studies on recent radiated insular groups: a meta-analysis using Cabo Verde biodiversity
title_sort Shortcomings of phylogenetic studies on recent radiated insular groups: a meta-analysis using Cabo Verde biodiversity
author Romeiras, Maria
author_facet Romeiras, Maria
Pena, Ana Rita
Menezes, Tiago
Vasconcelos, Raquel
Monteiro, Filipa
Paulo, Octávio S.
Moura, Mónica
author_role author
author2 Pena, Ana Rita
Menezes, Tiago
Vasconcelos, Raquel
Monteiro, Filipa
Paulo, Octávio S.
Moura, Mónica
author2_role author
author
author
author
author
author
dc.contributor.none.fl_str_mv Repositório da Universidade de Lisboa
dc.contributor.author.fl_str_mv Romeiras, Maria
Pena, Ana Rita
Menezes, Tiago
Vasconcelos, Raquel
Monteiro, Filipa
Paulo, Octávio S.
Moura, Mónica
dc.subject.por.fl_str_mv Macaronesia
endemic species
evolution
phylogenetic inference
divergence times
bioinformatics
phylogenomics
topic Macaronesia
endemic species
evolution
phylogenetic inference
divergence times
bioinformatics
phylogenomics
description Review
publishDate 2019
dc.date.none.fl_str_mv 2019-07-02T12:36:12Z
2019
2019-01-01T00:00:00Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10400.5/18087
url http://hdl.handle.net/10400.5/18087
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Int. J. Mol. Sci. 2019, 20, 2782
10.3390/ijms20112782
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv MDPI
publisher.none.fl_str_mv MDPI
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron:RCAAP
instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron_str RCAAP
institution RCAAP
reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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