Non-canonical amino acids as building blocks for peptidomimetics: structure, function, and applications

Detalhes bibliográficos
Autor(a) principal: Castro, Tarsila Gabriel
Data de Publicação: 2023
Outros Autores: Melle-Franco, Manuel, Sousa, Cristina E. A., Cavaco-Paulo, Artur, Marcos, João Carlos
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: https://hdl.handle.net/1822/84992
Resumo: This review provides a fresh overview of non-canonical amino acids and their applications in the design of peptidomimetics. Non-canonical amino acids appear widely distributed in nature and are known to enhance the stability of specific secondary structures and/or biological function. Contrary to the ubiquitous DNA-encoded amino acids, the structure and function of these residues are not fully understood. Here, results from experimental and molecular modelling approaches are gathered to classify several classes of non-canonical amino acids according to their ability to induce specific secondary structures yielding different biological functions and improved stability. Regarding side-chain modifications, symmetrical and asymmetrical α,α-dialkyl glycines, Cα to Cα cyclized amino acids, proline analogues, β-substituted amino acids, and α,β-dehydro amino acids are some of the non-canonical representatives addressed. Backbone modifications were also examined, especially those that result in retro-inverso peptidomimetics and depsipeptides. All this knowledge has an important application in the field of peptidomimetics, which is in continuous progress and promises to deliver new biologically active molecules and new materials in the near future.
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spelling Non-canonical amino acids as building blocks for peptidomimetics: structure, function, and applicationsNon-canonical amino acidsSide-chain modificationsBackbone modificationsPeptidomimeticsFoldamersStructure-function relationshipThis review provides a fresh overview of non-canonical amino acids and their applications in the design of peptidomimetics. Non-canonical amino acids appear widely distributed in nature and are known to enhance the stability of specific secondary structures and/or biological function. Contrary to the ubiquitous DNA-encoded amino acids, the structure and function of these residues are not fully understood. Here, results from experimental and molecular modelling approaches are gathered to classify several classes of non-canonical amino acids according to their ability to induce specific secondary structures yielding different biological functions and improved stability. Regarding side-chain modifications, symmetrical and asymmetrical α,α-dialkyl glycines, Cα to Cα cyclized amino acids, proline analogues, β-substituted amino acids, and α,β-dehydro amino acids are some of the non-canonical representatives addressed. Backbone modifications were also examined, especially those that result in retro-inverso peptidomimetics and depsipeptides. All this knowledge has an important application in the field of peptidomimetics, which is in continuous progress and promises to deliver new biologically active molecules and new materials in the near future.This research was funding by the following projects: UIBD/04469/2020, LA/P/0029/2020, IF/00894/2015, UIDB/50011/2020, UIDP/50011/2020, LA/P/0006/2020, UID/QUI/00686/2019 and NORTE-07-0162-FEDER-000086.Castro and Cavaco-Paulo thank the support received from the Portuguese Foundation for Science and Technology (FCT) through the strategic funding of UIDB/04469/2020 unit and by LABBELS—Associate Laboratory in Biotechnology, Bioengineering, and Microelectromechanical Systems, LA/P/0029/2020. Melle-Franco would like to acknowledge support through the project IF/00894/2015 and within the scope of the project CICECO-Aveiro Institute of Materials,UIDB/50011/2020, UIDP/50011/2020, and LA/P/0006/2020, financed by national funds through the FCT/MEC (PIDDAC). Marcos acknowledges the Portuguese Foundation for Science and Technology(FCT) for financial support through the Centre of Chemistry of the University of Minho (CQ-UM) (project UID/QUI/00686/2019). Access to computing resources funded by the Project “Search-ON2: Revitalization of HPC infrastructure of UMinho” (NORTE-07-0162-FEDER-000086), cofounded by the North Portugal Regional Operational Programme (ON.2 –O Novo Norte), under the National Strategic Reference Framework (NSRF), through the European Regional Development Fund (ERDF), is also gratefully acknowledged.info:eu-repo/semantics/publishedVersionMultidisciplinary Digital Publishing Institute (MDPI)Universidade do MinhoCastro, Tarsila GabrielMelle-Franco, ManuelSousa, Cristina E. A.Cavaco-Paulo, ArturMarcos, João Carlos2023-06-122023-06-12T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttps://hdl.handle.net/1822/84992engCastro, T.; Melle-Franco, Manuel; Sousa, Cristina; Cavaco-Paulo, Artur; Marcos, João C., Non-canonical amino acids as building blocks for peptidomimetics: structure, function, and applications. Biomolecules, 13(6), 981, 20232218-273X10.3390/biom1306098137371561https://www.mdpi.com/2218-273X/13/6/981info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-12-23T01:33:39Zoai:repositorium.sdum.uminho.pt:1822/84992Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T19:31:29.355146Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Non-canonical amino acids as building blocks for peptidomimetics: structure, function, and applications
title Non-canonical amino acids as building blocks for peptidomimetics: structure, function, and applications
spellingShingle Non-canonical amino acids as building blocks for peptidomimetics: structure, function, and applications
Castro, Tarsila Gabriel
Non-canonical amino acids
Side-chain modifications
Backbone modifications
Peptidomimetics
Foldamers
Structure-function relationship
title_short Non-canonical amino acids as building blocks for peptidomimetics: structure, function, and applications
title_full Non-canonical amino acids as building blocks for peptidomimetics: structure, function, and applications
title_fullStr Non-canonical amino acids as building blocks for peptidomimetics: structure, function, and applications
title_full_unstemmed Non-canonical amino acids as building blocks for peptidomimetics: structure, function, and applications
title_sort Non-canonical amino acids as building blocks for peptidomimetics: structure, function, and applications
author Castro, Tarsila Gabriel
author_facet Castro, Tarsila Gabriel
Melle-Franco, Manuel
Sousa, Cristina E. A.
Cavaco-Paulo, Artur
Marcos, João Carlos
author_role author
author2 Melle-Franco, Manuel
Sousa, Cristina E. A.
Cavaco-Paulo, Artur
Marcos, João Carlos
author2_role author
author
author
author
dc.contributor.none.fl_str_mv Universidade do Minho
dc.contributor.author.fl_str_mv Castro, Tarsila Gabriel
Melle-Franco, Manuel
Sousa, Cristina E. A.
Cavaco-Paulo, Artur
Marcos, João Carlos
dc.subject.por.fl_str_mv Non-canonical amino acids
Side-chain modifications
Backbone modifications
Peptidomimetics
Foldamers
Structure-function relationship
topic Non-canonical amino acids
Side-chain modifications
Backbone modifications
Peptidomimetics
Foldamers
Structure-function relationship
description This review provides a fresh overview of non-canonical amino acids and their applications in the design of peptidomimetics. Non-canonical amino acids appear widely distributed in nature and are known to enhance the stability of specific secondary structures and/or biological function. Contrary to the ubiquitous DNA-encoded amino acids, the structure and function of these residues are not fully understood. Here, results from experimental and molecular modelling approaches are gathered to classify several classes of non-canonical amino acids according to their ability to induce specific secondary structures yielding different biological functions and improved stability. Regarding side-chain modifications, symmetrical and asymmetrical α,α-dialkyl glycines, Cα to Cα cyclized amino acids, proline analogues, β-substituted amino acids, and α,β-dehydro amino acids are some of the non-canonical representatives addressed. Backbone modifications were also examined, especially those that result in retro-inverso peptidomimetics and depsipeptides. All this knowledge has an important application in the field of peptidomimetics, which is in continuous progress and promises to deliver new biologically active molecules and new materials in the near future.
publishDate 2023
dc.date.none.fl_str_mv 2023-06-12
2023-06-12T00:00:00Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://hdl.handle.net/1822/84992
url https://hdl.handle.net/1822/84992
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Castro, T.; Melle-Franco, Manuel; Sousa, Cristina; Cavaco-Paulo, Artur; Marcos, João C., Non-canonical amino acids as building blocks for peptidomimetics: structure, function, and applications. Biomolecules, 13(6), 981, 2023
2218-273X
10.3390/biom13060981
37371561
https://www.mdpi.com/2218-273X/13/6/981
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Multidisciplinary Digital Publishing Institute (MDPI)
publisher.none.fl_str_mv Multidisciplinary Digital Publishing Institute (MDPI)
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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