Non-canonical amino acids as building blocks for peptidomimetics: structure, function, and applications
Autor(a) principal: | |
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Data de Publicação: | 2023 |
Outros Autores: | , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
Texto Completo: | https://hdl.handle.net/1822/84992 |
Resumo: | This review provides a fresh overview of non-canonical amino acids and their applications in the design of peptidomimetics. Non-canonical amino acids appear widely distributed in nature and are known to enhance the stability of specific secondary structures and/or biological function. Contrary to the ubiquitous DNA-encoded amino acids, the structure and function of these residues are not fully understood. Here, results from experimental and molecular modelling approaches are gathered to classify several classes of non-canonical amino acids according to their ability to induce specific secondary structures yielding different biological functions and improved stability. Regarding side-chain modifications, symmetrical and asymmetrical α,α-dialkyl glycines, Cα to Cα cyclized amino acids, proline analogues, β-substituted amino acids, and α,β-dehydro amino acids are some of the non-canonical representatives addressed. Backbone modifications were also examined, especially those that result in retro-inverso peptidomimetics and depsipeptides. All this knowledge has an important application in the field of peptidomimetics, which is in continuous progress and promises to deliver new biologically active molecules and new materials in the near future. |
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Non-canonical amino acids as building blocks for peptidomimetics: structure, function, and applicationsNon-canonical amino acidsSide-chain modificationsBackbone modificationsPeptidomimeticsFoldamersStructure-function relationshipThis review provides a fresh overview of non-canonical amino acids and their applications in the design of peptidomimetics. Non-canonical amino acids appear widely distributed in nature and are known to enhance the stability of specific secondary structures and/or biological function. Contrary to the ubiquitous DNA-encoded amino acids, the structure and function of these residues are not fully understood. Here, results from experimental and molecular modelling approaches are gathered to classify several classes of non-canonical amino acids according to their ability to induce specific secondary structures yielding different biological functions and improved stability. Regarding side-chain modifications, symmetrical and asymmetrical α,α-dialkyl glycines, Cα to Cα cyclized amino acids, proline analogues, β-substituted amino acids, and α,β-dehydro amino acids are some of the non-canonical representatives addressed. Backbone modifications were also examined, especially those that result in retro-inverso peptidomimetics and depsipeptides. All this knowledge has an important application in the field of peptidomimetics, which is in continuous progress and promises to deliver new biologically active molecules and new materials in the near future.This research was funding by the following projects: UIBD/04469/2020, LA/P/0029/2020, IF/00894/2015, UIDB/50011/2020, UIDP/50011/2020, LA/P/0006/2020, UID/QUI/00686/2019 and NORTE-07-0162-FEDER-000086.Castro and Cavaco-Paulo thank the support received from the Portuguese Foundation for Science and Technology (FCT) through the strategic funding of UIDB/04469/2020 unit and by LABBELS—Associate Laboratory in Biotechnology, Bioengineering, and Microelectromechanical Systems, LA/P/0029/2020. Melle-Franco would like to acknowledge support through the project IF/00894/2015 and within the scope of the project CICECO-Aveiro Institute of Materials,UIDB/50011/2020, UIDP/50011/2020, and LA/P/0006/2020, financed by national funds through the FCT/MEC (PIDDAC). Marcos acknowledges the Portuguese Foundation for Science and Technology(FCT) for financial support through the Centre of Chemistry of the University of Minho (CQ-UM) (project UID/QUI/00686/2019). Access to computing resources funded by the Project “Search-ON2: Revitalization of HPC infrastructure of UMinho” (NORTE-07-0162-FEDER-000086), cofounded by the North Portugal Regional Operational Programme (ON.2 –O Novo Norte), under the National Strategic Reference Framework (NSRF), through the European Regional Development Fund (ERDF), is also gratefully acknowledged.info:eu-repo/semantics/publishedVersionMultidisciplinary Digital Publishing Institute (MDPI)Universidade do MinhoCastro, Tarsila GabrielMelle-Franco, ManuelSousa, Cristina E. A.Cavaco-Paulo, ArturMarcos, João Carlos2023-06-122023-06-12T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttps://hdl.handle.net/1822/84992engCastro, T.; Melle-Franco, Manuel; Sousa, Cristina; Cavaco-Paulo, Artur; Marcos, João C., Non-canonical amino acids as building blocks for peptidomimetics: structure, function, and applications. Biomolecules, 13(6), 981, 20232218-273X10.3390/biom1306098137371561https://www.mdpi.com/2218-273X/13/6/981info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-12-23T01:33:39Zoai:repositorium.sdum.uminho.pt:1822/84992Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T19:31:29.355146Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse |
dc.title.none.fl_str_mv |
Non-canonical amino acids as building blocks for peptidomimetics: structure, function, and applications |
title |
Non-canonical amino acids as building blocks for peptidomimetics: structure, function, and applications |
spellingShingle |
Non-canonical amino acids as building blocks for peptidomimetics: structure, function, and applications Castro, Tarsila Gabriel Non-canonical amino acids Side-chain modifications Backbone modifications Peptidomimetics Foldamers Structure-function relationship |
title_short |
Non-canonical amino acids as building blocks for peptidomimetics: structure, function, and applications |
title_full |
Non-canonical amino acids as building blocks for peptidomimetics: structure, function, and applications |
title_fullStr |
Non-canonical amino acids as building blocks for peptidomimetics: structure, function, and applications |
title_full_unstemmed |
Non-canonical amino acids as building blocks for peptidomimetics: structure, function, and applications |
title_sort |
Non-canonical amino acids as building blocks for peptidomimetics: structure, function, and applications |
author |
Castro, Tarsila Gabriel |
author_facet |
Castro, Tarsila Gabriel Melle-Franco, Manuel Sousa, Cristina E. A. Cavaco-Paulo, Artur Marcos, João Carlos |
author_role |
author |
author2 |
Melle-Franco, Manuel Sousa, Cristina E. A. Cavaco-Paulo, Artur Marcos, João Carlos |
author2_role |
author author author author |
dc.contributor.none.fl_str_mv |
Universidade do Minho |
dc.contributor.author.fl_str_mv |
Castro, Tarsila Gabriel Melle-Franco, Manuel Sousa, Cristina E. A. Cavaco-Paulo, Artur Marcos, João Carlos |
dc.subject.por.fl_str_mv |
Non-canonical amino acids Side-chain modifications Backbone modifications Peptidomimetics Foldamers Structure-function relationship |
topic |
Non-canonical amino acids Side-chain modifications Backbone modifications Peptidomimetics Foldamers Structure-function relationship |
description |
This review provides a fresh overview of non-canonical amino acids and their applications in the design of peptidomimetics. Non-canonical amino acids appear widely distributed in nature and are known to enhance the stability of specific secondary structures and/or biological function. Contrary to the ubiquitous DNA-encoded amino acids, the structure and function of these residues are not fully understood. Here, results from experimental and molecular modelling approaches are gathered to classify several classes of non-canonical amino acids according to their ability to induce specific secondary structures yielding different biological functions and improved stability. Regarding side-chain modifications, symmetrical and asymmetrical α,α-dialkyl glycines, Cα to Cα cyclized amino acids, proline analogues, β-substituted amino acids, and α,β-dehydro amino acids are some of the non-canonical representatives addressed. Backbone modifications were also examined, especially those that result in retro-inverso peptidomimetics and depsipeptides. All this knowledge has an important application in the field of peptidomimetics, which is in continuous progress and promises to deliver new biologically active molecules and new materials in the near future. |
publishDate |
2023 |
dc.date.none.fl_str_mv |
2023-06-12 2023-06-12T00:00:00Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
https://hdl.handle.net/1822/84992 |
url |
https://hdl.handle.net/1822/84992 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Castro, T.; Melle-Franco, Manuel; Sousa, Cristina; Cavaco-Paulo, Artur; Marcos, João C., Non-canonical amino acids as building blocks for peptidomimetics: structure, function, and applications. Biomolecules, 13(6), 981, 2023 2218-273X 10.3390/biom13060981 37371561 https://www.mdpi.com/2218-273X/13/6/981 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.publisher.none.fl_str_mv |
Multidisciplinary Digital Publishing Institute (MDPI) |
publisher.none.fl_str_mv |
Multidisciplinary Digital Publishing Institute (MDPI) |
dc.source.none.fl_str_mv |
reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação instacron:RCAAP |
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Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
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RCAAP |
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RCAAP |
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Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
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Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
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Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
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1799132824068947968 |