Complete mitochondrial genome of the branching octocoral Paramuricea grayi (Johnson, 1861), phylogenetic relationships and divergence analysis
Autor(a) principal: | |
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Data de Publicação: | 2022 |
Outros Autores: | , , , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
Texto Completo: | http://hdl.handle.net/10400.12/8881 |
Resumo: | The Gray’s sea fan, Paramuricea grayi (Johnson, 1861), typically inhabits deep littoral and circalittoral habitats of the eastern temperate and tropical Atlantic Ocean. Along the Iberian Peninsula, where P. grayi is a dominant constituent of circalittoral coral gardens, two segregating lineages (yellow and purple morphotypes) were recently identified using single-copy nuclear orthologues. The mitochondrial genomes of 9 P. grayi individuals covering both color morphotypes were assembled from RNA-seq data, using samples collected at three sites in southern (Sagres and Tavira) and western (Cape Espichel) Portugal. The complete circular mitogenome is 18,668 bp in length, has an A þ T-rich base composition (62.5%) and contains the 17 genes typically found in Octocorallia: 14 protein-coding genes (atp6, atp8, cob, cox1-3, mt-mutS, nad1-6, and nad4L), the small and large subunit rRNAs (rns and rnl), and one transfer RNA (trnM). The mitogenomes were nearly identical for all specimens, though we identified a noteworthy polymorphism (two SNPs 9 bp apart) in the mt-mutS of one purple individual that is shared with the sister species P. clavata. The mitogenomes of the two species have a pairwise sequence identity of 99.0%, with nad6 and mt-mutS having the highest rates of non-synonymous substitutions. |
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Complete mitochondrial genome of the branching octocoral Paramuricea grayi (Johnson, 1861), phylogenetic relationships and divergence analysisOctocoralliaGorgonianGray’s sea fanMitogenomeRNA-seqThe Gray’s sea fan, Paramuricea grayi (Johnson, 1861), typically inhabits deep littoral and circalittoral habitats of the eastern temperate and tropical Atlantic Ocean. Along the Iberian Peninsula, where P. grayi is a dominant constituent of circalittoral coral gardens, two segregating lineages (yellow and purple morphotypes) were recently identified using single-copy nuclear orthologues. The mitochondrial genomes of 9 P. grayi individuals covering both color morphotypes were assembled from RNA-seq data, using samples collected at three sites in southern (Sagres and Tavira) and western (Cape Espichel) Portugal. The complete circular mitogenome is 18,668 bp in length, has an A þ T-rich base composition (62.5%) and contains the 17 genes typically found in Octocorallia: 14 protein-coding genes (atp6, atp8, cob, cox1-3, mt-mutS, nad1-6, and nad4L), the small and large subunit rRNAs (rns and rnl), and one transfer RNA (trnM). The mitogenomes were nearly identical for all specimens, though we identified a noteworthy polymorphism (two SNPs 9 bp apart) in the mt-mutS of one purple individual that is shared with the sister species P. clavata. The mitogenomes of the two species have a pairwise sequence identity of 99.0%, with nad6 and mt-mutS having the highest rates of non-synonymous substitutions.Fundação para a Ciência e Tecnologia - FCTTaylor and Francis Ltd.Repositório do ISPACoelho, Márcio A. G.Ledoux, Jean-BaptisteBoavida, JoanaPaulo, DiogoGómez-Gras, DanielBensoussan, NathanielLópez-Sendino, PaulaCerrano, CarloKipson, SilvijaBakran-Petricioli, TatjanaGarrabou, JoaquimEA, SerraoPearson, Gareth Anthony2022-12-26T15:02:51Z20222022-01-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10400.12/8881engCoelho, M. A. G., Paulo, D., Serrão, E. A., Pearson, G. A., Ledoux, J.-B., Boavida, J., Bensoussan, N., Garrabou, J., Gómez-Gras, D., López-Sendino, P., Cerrano, C., Kipson, S., & Bakran-Petricioli, T. (2022). Complete mitochondrial genome of the branching octocoral Paramuricea grayi (Johnson, 1861), phylogenetic relationships and divergence analysis. Mitochondrial DNA Part B: Resources, 7(11), 1985–1988. https://doi.org/10.1080/23802359.2022.21432462380235910.1080/23802359.2022.2143246info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-01-01T02:15:43Zoai:repositorio.ispa.pt:10400.12/8881Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T16:29:13.324674Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse |
dc.title.none.fl_str_mv |
Complete mitochondrial genome of the branching octocoral Paramuricea grayi (Johnson, 1861), phylogenetic relationships and divergence analysis |
title |
Complete mitochondrial genome of the branching octocoral Paramuricea grayi (Johnson, 1861), phylogenetic relationships and divergence analysis |
spellingShingle |
Complete mitochondrial genome of the branching octocoral Paramuricea grayi (Johnson, 1861), phylogenetic relationships and divergence analysis Coelho, Márcio A. G. Octocorallia Gorgonian Gray’s sea fan Mitogenome RNA-seq |
title_short |
Complete mitochondrial genome of the branching octocoral Paramuricea grayi (Johnson, 1861), phylogenetic relationships and divergence analysis |
title_full |
Complete mitochondrial genome of the branching octocoral Paramuricea grayi (Johnson, 1861), phylogenetic relationships and divergence analysis |
title_fullStr |
Complete mitochondrial genome of the branching octocoral Paramuricea grayi (Johnson, 1861), phylogenetic relationships and divergence analysis |
title_full_unstemmed |
Complete mitochondrial genome of the branching octocoral Paramuricea grayi (Johnson, 1861), phylogenetic relationships and divergence analysis |
title_sort |
Complete mitochondrial genome of the branching octocoral Paramuricea grayi (Johnson, 1861), phylogenetic relationships and divergence analysis |
author |
Coelho, Márcio A. G. |
author_facet |
Coelho, Márcio A. G. Ledoux, Jean-Baptiste Boavida, Joana Paulo, Diogo Gómez-Gras, Daniel Bensoussan, Nathaniel López-Sendino, Paula Cerrano, Carlo Kipson, Silvija Bakran-Petricioli, Tatjana Garrabou, Joaquim EA, Serrao Pearson, Gareth Anthony |
author_role |
author |
author2 |
Ledoux, Jean-Baptiste Boavida, Joana Paulo, Diogo Gómez-Gras, Daniel Bensoussan, Nathaniel López-Sendino, Paula Cerrano, Carlo Kipson, Silvija Bakran-Petricioli, Tatjana Garrabou, Joaquim EA, Serrao Pearson, Gareth Anthony |
author2_role |
author author author author author author author author author author author author |
dc.contributor.none.fl_str_mv |
Repositório do ISPA |
dc.contributor.author.fl_str_mv |
Coelho, Márcio A. G. Ledoux, Jean-Baptiste Boavida, Joana Paulo, Diogo Gómez-Gras, Daniel Bensoussan, Nathaniel López-Sendino, Paula Cerrano, Carlo Kipson, Silvija Bakran-Petricioli, Tatjana Garrabou, Joaquim EA, Serrao Pearson, Gareth Anthony |
dc.subject.por.fl_str_mv |
Octocorallia Gorgonian Gray’s sea fan Mitogenome RNA-seq |
topic |
Octocorallia Gorgonian Gray’s sea fan Mitogenome RNA-seq |
description |
The Gray’s sea fan, Paramuricea grayi (Johnson, 1861), typically inhabits deep littoral and circalittoral habitats of the eastern temperate and tropical Atlantic Ocean. Along the Iberian Peninsula, where P. grayi is a dominant constituent of circalittoral coral gardens, two segregating lineages (yellow and purple morphotypes) were recently identified using single-copy nuclear orthologues. The mitochondrial genomes of 9 P. grayi individuals covering both color morphotypes were assembled from RNA-seq data, using samples collected at three sites in southern (Sagres and Tavira) and western (Cape Espichel) Portugal. The complete circular mitogenome is 18,668 bp in length, has an A þ T-rich base composition (62.5%) and contains the 17 genes typically found in Octocorallia: 14 protein-coding genes (atp6, atp8, cob, cox1-3, mt-mutS, nad1-6, and nad4L), the small and large subunit rRNAs (rns and rnl), and one transfer RNA (trnM). The mitogenomes were nearly identical for all specimens, though we identified a noteworthy polymorphism (two SNPs 9 bp apart) in the mt-mutS of one purple individual that is shared with the sister species P. clavata. The mitogenomes of the two species have a pairwise sequence identity of 99.0%, with nad6 and mt-mutS having the highest rates of non-synonymous substitutions. |
publishDate |
2022 |
dc.date.none.fl_str_mv |
2022-12-26T15:02:51Z 2022 2022-01-01T00:00:00Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://hdl.handle.net/10400.12/8881 |
url |
http://hdl.handle.net/10400.12/8881 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Coelho, M. A. G., Paulo, D., Serrão, E. A., Pearson, G. A., Ledoux, J.-B., Boavida, J., Bensoussan, N., Garrabou, J., Gómez-Gras, D., López-Sendino, P., Cerrano, C., Kipson, S., & Bakran-Petricioli, T. (2022). Complete mitochondrial genome of the branching octocoral Paramuricea grayi (Johnson, 1861), phylogenetic relationships and divergence analysis. Mitochondrial DNA Part B: Resources, 7(11), 1985–1988. https://doi.org/10.1080/23802359.2022.2143246 23802359 10.1080/23802359.2022.2143246 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.publisher.none.fl_str_mv |
Taylor and Francis Ltd. |
publisher.none.fl_str_mv |
Taylor and Francis Ltd. |
dc.source.none.fl_str_mv |
reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação instacron:RCAAP |
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Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
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RCAAP |
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RCAAP |
reponame_str |
Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
collection |
Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
repository.name.fl_str_mv |
Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
repository.mail.fl_str_mv |
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1799130749796876288 |