Quantifying time-inhomogeneous stochastic introgression processes with hazard rates
Autor(a) principal: | |
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Data de Publicação: | 2012 |
Outros Autores: | , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
Texto Completo: | http://hdl.handle.net/1822/21426 |
Resumo: | Introgression is the permanent incorporation of genes from one population into another through hybridization and backcrossing. It is currently of particular concern as a possible mechanism for the spread of modi ed crop genes to wild populations. The hazard rate is the probability per time unit that such an escape takes place, given that it has not happened before. It is a quantitative measure of introgression risk that takes the stochastic elements inherent in introgression processes into account. We present a methodology to calculate the hazard rate for situations with time-varying gene ow from a crop to a large recipient wild population. As an illustration, several types of time-inhomogeneity are examined, including deterministic periodicity as well as random variation. Furthermore, we examine the e ects of an extended tness bottleneck of hybrids and backcrosses in combination with time-varying gene ow. It is found that bottlenecks decrease the hazard rate, but also slow down and delay its changes in reaction to changes in gene ow. Furthermore, we nd that random variation in gene ow generates a lower hazard rate than analogous deterministic variation. We discuss the implications of our ndings for crop management and introgression risk assessment. |
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Quantifying time-inhomogeneous stochastic introgression processes with hazard ratesBranching processInvasionTransgeneRisk managementRandom environmentScience & TechnologyIntrogression is the permanent incorporation of genes from one population into another through hybridization and backcrossing. It is currently of particular concern as a possible mechanism for the spread of modi ed crop genes to wild populations. The hazard rate is the probability per time unit that such an escape takes place, given that it has not happened before. It is a quantitative measure of introgression risk that takes the stochastic elements inherent in introgression processes into account. We present a methodology to calculate the hazard rate for situations with time-varying gene ow from a crop to a large recipient wild population. As an illustration, several types of time-inhomogeneity are examined, including deterministic periodicity as well as random variation. Furthermore, we examine the e ects of an extended tness bottleneck of hybrids and backcrosses in combination with time-varying gene ow. It is found that bottlenecks decrease the hazard rate, but also slow down and delay its changes in reaction to changes in gene ow. Furthermore, we nd that random variation in gene ow generates a lower hazard rate than analogous deterministic variation. We discuss the implications of our ndings for crop management and introgression risk assessment.This research was funded through the research program 'Ecology Regarding Genetically modified Organisms (ERGO)', commissioned by four Dutch ministries. This funding program is managed by the Earth and Life Sciences Council (ALW) of the Netherlands Organisation for Scientific Research (NWO). P. Haccou's research is additionally supported by the NDNS (Nonlinear Dynamics of Natural Systems) program of NWO. M.C. Serra would like to thank the Fundacao para a Ciencia e Tecnologia for financial support through the scholarship SFRH/BPD/47615/2008. We thank Marije Stoops and Prof. Baorong Lu for discussions and comments on a previous version.ElsevierUniversidade do MinhoGhosh, AtiyoSerra, Maria ConceiçãoHaccou, Patsy2012-062012-06-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/1822/21426eng0040-580910.1016/j.tpb.2011.11.00622178309http://www.sciencedirect.com/science/article/pii/S004058091100102Xinfo:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-07-21T11:58:42Zoai:repositorium.sdum.uminho.pt:1822/21426Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T18:48:28.088017Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse |
dc.title.none.fl_str_mv |
Quantifying time-inhomogeneous stochastic introgression processes with hazard rates |
title |
Quantifying time-inhomogeneous stochastic introgression processes with hazard rates |
spellingShingle |
Quantifying time-inhomogeneous stochastic introgression processes with hazard rates Ghosh, Atiyo Branching process Invasion Transgene Risk management Random environment Science & Technology |
title_short |
Quantifying time-inhomogeneous stochastic introgression processes with hazard rates |
title_full |
Quantifying time-inhomogeneous stochastic introgression processes with hazard rates |
title_fullStr |
Quantifying time-inhomogeneous stochastic introgression processes with hazard rates |
title_full_unstemmed |
Quantifying time-inhomogeneous stochastic introgression processes with hazard rates |
title_sort |
Quantifying time-inhomogeneous stochastic introgression processes with hazard rates |
author |
Ghosh, Atiyo |
author_facet |
Ghosh, Atiyo Serra, Maria Conceição Haccou, Patsy |
author_role |
author |
author2 |
Serra, Maria Conceição Haccou, Patsy |
author2_role |
author author |
dc.contributor.none.fl_str_mv |
Universidade do Minho |
dc.contributor.author.fl_str_mv |
Ghosh, Atiyo Serra, Maria Conceição Haccou, Patsy |
dc.subject.por.fl_str_mv |
Branching process Invasion Transgene Risk management Random environment Science & Technology |
topic |
Branching process Invasion Transgene Risk management Random environment Science & Technology |
description |
Introgression is the permanent incorporation of genes from one population into another through hybridization and backcrossing. It is currently of particular concern as a possible mechanism for the spread of modi ed crop genes to wild populations. The hazard rate is the probability per time unit that such an escape takes place, given that it has not happened before. It is a quantitative measure of introgression risk that takes the stochastic elements inherent in introgression processes into account. We present a methodology to calculate the hazard rate for situations with time-varying gene ow from a crop to a large recipient wild population. As an illustration, several types of time-inhomogeneity are examined, including deterministic periodicity as well as random variation. Furthermore, we examine the e ects of an extended tness bottleneck of hybrids and backcrosses in combination with time-varying gene ow. It is found that bottlenecks decrease the hazard rate, but also slow down and delay its changes in reaction to changes in gene ow. Furthermore, we nd that random variation in gene ow generates a lower hazard rate than analogous deterministic variation. We discuss the implications of our ndings for crop management and introgression risk assessment. |
publishDate |
2012 |
dc.date.none.fl_str_mv |
2012-06 2012-06-01T00:00:00Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://hdl.handle.net/1822/21426 |
url |
http://hdl.handle.net/1822/21426 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
0040-5809 10.1016/j.tpb.2011.11.006 22178309 http://www.sciencedirect.com/science/article/pii/S004058091100102X |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.publisher.none.fl_str_mv |
Elsevier |
publisher.none.fl_str_mv |
Elsevier |
dc.source.none.fl_str_mv |
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Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
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RCAAP |
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RCAAP |
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Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
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Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
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Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
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1799132246477635584 |