Quantifying time-inhomogeneous stochastic introgression processes with hazard rates

Detalhes bibliográficos
Autor(a) principal: Ghosh, Atiyo
Data de Publicação: 2012
Outros Autores: Serra, Maria Conceição, Haccou, Patsy
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/1822/21426
Resumo: Introgression is the permanent incorporation of genes from one population into another through hybridization and backcrossing. It is currently of particular concern as a possible mechanism for the spread of modi ed crop genes to wild populations. The hazard rate is the probability per time unit that such an escape takes place, given that it has not happened before. It is a quantitative measure of introgression risk that takes the stochastic elements inherent in introgression processes into account. We present a methodology to calculate the hazard rate for situations with time-varying gene ow from a crop to a large recipient wild population. As an illustration, several types of time-inhomogeneity are examined, including deterministic periodicity as well as random variation. Furthermore, we examine the e ects of an extended tness bottleneck of hybrids and backcrosses in combination with time-varying gene ow. It is found that bottlenecks decrease the hazard rate, but also slow down and delay its changes in reaction to changes in gene ow. Furthermore, we nd that random variation in gene ow generates a lower hazard rate than analogous deterministic variation. We discuss the implications of our ndings for crop management and introgression risk assessment.
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spelling Quantifying time-inhomogeneous stochastic introgression processes with hazard ratesBranching processInvasionTransgeneRisk managementRandom environmentScience & TechnologyIntrogression is the permanent incorporation of genes from one population into another through hybridization and backcrossing. It is currently of particular concern as a possible mechanism for the spread of modi ed crop genes to wild populations. The hazard rate is the probability per time unit that such an escape takes place, given that it has not happened before. It is a quantitative measure of introgression risk that takes the stochastic elements inherent in introgression processes into account. We present a methodology to calculate the hazard rate for situations with time-varying gene ow from a crop to a large recipient wild population. As an illustration, several types of time-inhomogeneity are examined, including deterministic periodicity as well as random variation. Furthermore, we examine the e ects of an extended tness bottleneck of hybrids and backcrosses in combination with time-varying gene ow. It is found that bottlenecks decrease the hazard rate, but also slow down and delay its changes in reaction to changes in gene ow. Furthermore, we nd that random variation in gene ow generates a lower hazard rate than analogous deterministic variation. We discuss the implications of our ndings for crop management and introgression risk assessment.This research was funded through the research program 'Ecology Regarding Genetically modified Organisms (ERGO)', commissioned by four Dutch ministries. This funding program is managed by the Earth and Life Sciences Council (ALW) of the Netherlands Organisation for Scientific Research (NWO). P. Haccou's research is additionally supported by the NDNS (Nonlinear Dynamics of Natural Systems) program of NWO. M.C. Serra would like to thank the Fundacao para a Ciencia e Tecnologia for financial support through the scholarship SFRH/BPD/47615/2008. We thank Marije Stoops and Prof. Baorong Lu for discussions and comments on a previous version.ElsevierUniversidade do MinhoGhosh, AtiyoSerra, Maria ConceiçãoHaccou, Patsy2012-062012-06-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/1822/21426eng0040-580910.1016/j.tpb.2011.11.00622178309http://www.sciencedirect.com/science/article/pii/S004058091100102Xinfo:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-07-21T11:58:42Zoai:repositorium.sdum.uminho.pt:1822/21426Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T18:48:28.088017Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Quantifying time-inhomogeneous stochastic introgression processes with hazard rates
title Quantifying time-inhomogeneous stochastic introgression processes with hazard rates
spellingShingle Quantifying time-inhomogeneous stochastic introgression processes with hazard rates
Ghosh, Atiyo
Branching process
Invasion
Transgene
Risk management
Random environment
Science & Technology
title_short Quantifying time-inhomogeneous stochastic introgression processes with hazard rates
title_full Quantifying time-inhomogeneous stochastic introgression processes with hazard rates
title_fullStr Quantifying time-inhomogeneous stochastic introgression processes with hazard rates
title_full_unstemmed Quantifying time-inhomogeneous stochastic introgression processes with hazard rates
title_sort Quantifying time-inhomogeneous stochastic introgression processes with hazard rates
author Ghosh, Atiyo
author_facet Ghosh, Atiyo
Serra, Maria Conceição
Haccou, Patsy
author_role author
author2 Serra, Maria Conceição
Haccou, Patsy
author2_role author
author
dc.contributor.none.fl_str_mv Universidade do Minho
dc.contributor.author.fl_str_mv Ghosh, Atiyo
Serra, Maria Conceição
Haccou, Patsy
dc.subject.por.fl_str_mv Branching process
Invasion
Transgene
Risk management
Random environment
Science & Technology
topic Branching process
Invasion
Transgene
Risk management
Random environment
Science & Technology
description Introgression is the permanent incorporation of genes from one population into another through hybridization and backcrossing. It is currently of particular concern as a possible mechanism for the spread of modi ed crop genes to wild populations. The hazard rate is the probability per time unit that such an escape takes place, given that it has not happened before. It is a quantitative measure of introgression risk that takes the stochastic elements inherent in introgression processes into account. We present a methodology to calculate the hazard rate for situations with time-varying gene ow from a crop to a large recipient wild population. As an illustration, several types of time-inhomogeneity are examined, including deterministic periodicity as well as random variation. Furthermore, we examine the e ects of an extended tness bottleneck of hybrids and backcrosses in combination with time-varying gene ow. It is found that bottlenecks decrease the hazard rate, but also slow down and delay its changes in reaction to changes in gene ow. Furthermore, we nd that random variation in gene ow generates a lower hazard rate than analogous deterministic variation. We discuss the implications of our ndings for crop management and introgression risk assessment.
publishDate 2012
dc.date.none.fl_str_mv 2012-06
2012-06-01T00:00:00Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/1822/21426
url http://hdl.handle.net/1822/21426
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 0040-5809
10.1016/j.tpb.2011.11.006
22178309
http://www.sciencedirect.com/science/article/pii/S004058091100102X
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
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dc.publisher.none.fl_str_mv Elsevier
publisher.none.fl_str_mv Elsevier
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