From species presences to abundances: Using unevenly collected plant species presences to disclose the structure and functioning of a dryland ecosystem

Detalhes bibliográficos
Autor(a) principal: Pereira de Oliveira, Ana Cláudia
Data de Publicação: 2020
Outros Autores: Nunes, Alice, Pinho, Pedro, Matos, Paula, Garcia Rodrigues, Renato, Branquinho, Cristina
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10451/45512
Resumo: Species abundance data is essential to understand ecosystems structure and functioning and to support species and habitat conservation. However, most regional to global databases provide only presence or presence/absence data. The main aim of this paper is to develop a methodology to estimate plant species abundances from a presence/absence database using as a case-study the largest and one of the most diverse tropical dry forest of the world – the understudied Caatinga vegetation, that dominates in the drylands of Brazil. Plant data missed abundance estimations and derived from different sources, with uneven sampling efforts over space and time. Starting from the raw data, we considered only the presence records of terrestrial plant individuals identified to the species-level. Afterwards, we applied the re-sampling method to estimate species abundances thus obtaining database DB1. To deal with the uneven sampling effort along the study area and increase information reliability, we filtered DB1 in two ways: (i) we excluded re-sampling units with a lower sampling effort and produced the Database DB2; (ii) we excluded low occurrence species and build the Database DB3. The reliability of the databases was compared by calculating a measure of their completeness. DB1 had 789 species over 323 sampling units, DB2 retained 530 species distributed in 38 sampling units, and DB3 retained 48 species over 113 sampling units. In DB1 and DB2, despite the different number of species considered, the percentage of exotic (7%), endemism (14%), woody (44%), climber (12%), and herbaceous species (45%) was similar. DB3 included only native species (no exotic species) and displayed a higher percentage of endemism (29%) and woody species (79%), and a lower proportion of herbaceous species (21%) than DB1 and DB2. The databases obtained provide an important basis to improve Caatinga ecological knowledge and conservation: we suggest the use of DB2 to support conservation strategies, and of DB3 to support ecosystem structure and functioning studies. Moreover, the re-sampling methodology proposed to estimate plant abundances from presence data, dealing with uneven sampling efforts across large areas and over time, provides an important tool that may be used to obtain abundance data, often essential to the development of plant-based indicators of ecosystem structure and functioning, and to support conservation studies.
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spelling From species presences to abundances: Using unevenly collected plant species presences to disclose the structure and functioning of a dryland ecosystemCaatingaConservationEcosystem functioningRegional plant databaseRe-samplingUneven sampling effortSpecies abundance data is essential to understand ecosystems structure and functioning and to support species and habitat conservation. However, most regional to global databases provide only presence or presence/absence data. The main aim of this paper is to develop a methodology to estimate plant species abundances from a presence/absence database using as a case-study the largest and one of the most diverse tropical dry forest of the world – the understudied Caatinga vegetation, that dominates in the drylands of Brazil. Plant data missed abundance estimations and derived from different sources, with uneven sampling efforts over space and time. Starting from the raw data, we considered only the presence records of terrestrial plant individuals identified to the species-level. Afterwards, we applied the re-sampling method to estimate species abundances thus obtaining database DB1. To deal with the uneven sampling effort along the study area and increase information reliability, we filtered DB1 in two ways: (i) we excluded re-sampling units with a lower sampling effort and produced the Database DB2; (ii) we excluded low occurrence species and build the Database DB3. The reliability of the databases was compared by calculating a measure of their completeness. DB1 had 789 species over 323 sampling units, DB2 retained 530 species distributed in 38 sampling units, and DB3 retained 48 species over 113 sampling units. In DB1 and DB2, despite the different number of species considered, the percentage of exotic (7%), endemism (14%), woody (44%), climber (12%), and herbaceous species (45%) was similar. DB3 included only native species (no exotic species) and displayed a higher percentage of endemism (29%) and woody species (79%), and a lower proportion of herbaceous species (21%) than DB1 and DB2. The databases obtained provide an important basis to improve Caatinga ecological knowledge and conservation: we suggest the use of DB2 to support conservation strategies, and of DB3 to support ecosystem structure and functioning studies. Moreover, the re-sampling methodology proposed to estimate plant abundances from presence data, dealing with uneven sampling efforts across large areas and over time, provides an important tool that may be used to obtain abundance data, often essential to the development of plant-based indicators of ecosystem structure and functioning, and to support conservation studies.Centre for Ecology and Environmental Monitoring (NEMA) and Reference Center for Restoration of Degraded Areas (CRAD), Petrolina, Pernambuco, Brazil.ElsevierRepositório da Universidade de LisboaPereira de Oliveira, Ana CláudiaNunes, AlicePinho, PedroMatos, PaulaGarcia Rodrigues, RenatoBranquinho, Cristina2022-06-04T00:30:23Z2020-062020-06-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10451/45512engA.C.P.deOliveira,A.Nunes, P.Pinho, P.Matos, R.G.Rodrigues & C.Branquinho, From species presences to abundances: using unevenly collected plant species presences to disclose the structure and functioning of a dryland ecosystem, https://doi.org/10.1016/j.ecolind.2020.10622110.1016/j.ecolind.2020.106221info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-11-08T16:47:21Zoai:repositorio.ul.pt:10451/45512Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T21:57:54.485591Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv From species presences to abundances: Using unevenly collected plant species presences to disclose the structure and functioning of a dryland ecosystem
title From species presences to abundances: Using unevenly collected plant species presences to disclose the structure and functioning of a dryland ecosystem
spellingShingle From species presences to abundances: Using unevenly collected plant species presences to disclose the structure and functioning of a dryland ecosystem
Pereira de Oliveira, Ana Cláudia
Caatinga
Conservation
Ecosystem functioning
Regional plant database
Re-sampling
Uneven sampling effort
title_short From species presences to abundances: Using unevenly collected plant species presences to disclose the structure and functioning of a dryland ecosystem
title_full From species presences to abundances: Using unevenly collected plant species presences to disclose the structure and functioning of a dryland ecosystem
title_fullStr From species presences to abundances: Using unevenly collected plant species presences to disclose the structure and functioning of a dryland ecosystem
title_full_unstemmed From species presences to abundances: Using unevenly collected plant species presences to disclose the structure and functioning of a dryland ecosystem
title_sort From species presences to abundances: Using unevenly collected plant species presences to disclose the structure and functioning of a dryland ecosystem
author Pereira de Oliveira, Ana Cláudia
author_facet Pereira de Oliveira, Ana Cláudia
Nunes, Alice
Pinho, Pedro
Matos, Paula
Garcia Rodrigues, Renato
Branquinho, Cristina
author_role author
author2 Nunes, Alice
Pinho, Pedro
Matos, Paula
Garcia Rodrigues, Renato
Branquinho, Cristina
author2_role author
author
author
author
author
dc.contributor.none.fl_str_mv Repositório da Universidade de Lisboa
dc.contributor.author.fl_str_mv Pereira de Oliveira, Ana Cláudia
Nunes, Alice
Pinho, Pedro
Matos, Paula
Garcia Rodrigues, Renato
Branquinho, Cristina
dc.subject.por.fl_str_mv Caatinga
Conservation
Ecosystem functioning
Regional plant database
Re-sampling
Uneven sampling effort
topic Caatinga
Conservation
Ecosystem functioning
Regional plant database
Re-sampling
Uneven sampling effort
description Species abundance data is essential to understand ecosystems structure and functioning and to support species and habitat conservation. However, most regional to global databases provide only presence or presence/absence data. The main aim of this paper is to develop a methodology to estimate plant species abundances from a presence/absence database using as a case-study the largest and one of the most diverse tropical dry forest of the world – the understudied Caatinga vegetation, that dominates in the drylands of Brazil. Plant data missed abundance estimations and derived from different sources, with uneven sampling efforts over space and time. Starting from the raw data, we considered only the presence records of terrestrial plant individuals identified to the species-level. Afterwards, we applied the re-sampling method to estimate species abundances thus obtaining database DB1. To deal with the uneven sampling effort along the study area and increase information reliability, we filtered DB1 in two ways: (i) we excluded re-sampling units with a lower sampling effort and produced the Database DB2; (ii) we excluded low occurrence species and build the Database DB3. The reliability of the databases was compared by calculating a measure of their completeness. DB1 had 789 species over 323 sampling units, DB2 retained 530 species distributed in 38 sampling units, and DB3 retained 48 species over 113 sampling units. In DB1 and DB2, despite the different number of species considered, the percentage of exotic (7%), endemism (14%), woody (44%), climber (12%), and herbaceous species (45%) was similar. DB3 included only native species (no exotic species) and displayed a higher percentage of endemism (29%) and woody species (79%), and a lower proportion of herbaceous species (21%) than DB1 and DB2. The databases obtained provide an important basis to improve Caatinga ecological knowledge and conservation: we suggest the use of DB2 to support conservation strategies, and of DB3 to support ecosystem structure and functioning studies. Moreover, the re-sampling methodology proposed to estimate plant abundances from presence data, dealing with uneven sampling efforts across large areas and over time, provides an important tool that may be used to obtain abundance data, often essential to the development of plant-based indicators of ecosystem structure and functioning, and to support conservation studies.
publishDate 2020
dc.date.none.fl_str_mv 2020-06
2020-06-01T00:00:00Z
2022-06-04T00:30:23Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10451/45512
url http://hdl.handle.net/10451/45512
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv A.C.P.deOliveira,A.Nunes, P.Pinho, P.Matos, R.G.Rodrigues & C.Branquinho, From species presences to abundances: using unevenly collected plant species presences to disclose the structure and functioning of a dryland ecosystem, https://doi.org/10.1016/j.ecolind.2020.106221
10.1016/j.ecolind.2020.106221
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Elsevier
publisher.none.fl_str_mv Elsevier
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
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