World Data Centre for Microorganisms: an information infrastructure to explore and utilize preserved microbial strains worldwide
Autor(a) principal: | |
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Data de Publicação: | 2017 |
Outros Autores: | , , , , , , , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
Texto Completo: | http://hdl.handle.net/1822/44352 |
Resumo: | The World Data Centre for Microorganisms (WDCM) was established 50 years ago as the data center of the World Federation for Culture Collections (WFCC) Microbial Resource Center (MIRCEN). WDCM aims to provide integrated information services using big data technology for microbial resource centers and microbiologists all over the world. Here, we provide an overview of WDCM including all of its integrated services. Culture Collections Information Worldwide (CCINFO) provides metadata information on 708 culture collections from 72 countries and regions. Global Catalogue of Microorganism (GCM) gathers strain catalogue information and provides a data retrieval, analysis, and visualization system of microbial resources. Currently, GCM includes more than 368,000 strains from 103 culture collections in 43 countries and regions. Analyzer of Bioresource Citation (ABC) is a data mining tool extracting strain related publications, patents, nucleotide sequences and genome information from public data sources to form a knowledge base. Reference Strain Catalogue (RSC) maintains a database of strains listed in International Standards Organization (ISO) and other international or regional standards. RSC allocates a unique identifier to strains recommended for use in diagnosis and quality control, and hence serves as a valuable cross-platform reference. WDCM provides free access to all these services at www.wdcm.org. |
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World Data Centre for Microorganisms: an information infrastructure to explore and utilize preserved microbial strains worldwideData miningData informationCulture CollectionsScience & TechnologyThe World Data Centre for Microorganisms (WDCM) was established 50 years ago as the data center of the World Federation for Culture Collections (WFCC) Microbial Resource Center (MIRCEN). WDCM aims to provide integrated information services using big data technology for microbial resource centers and microbiologists all over the world. Here, we provide an overview of WDCM including all of its integrated services. Culture Collections Information Worldwide (CCINFO) provides metadata information on 708 culture collections from 72 countries and regions. Global Catalogue of Microorganism (GCM) gathers strain catalogue information and provides a data retrieval, analysis, and visualization system of microbial resources. Currently, GCM includes more than 368,000 strains from 103 culture collections in 43 countries and regions. Analyzer of Bioresource Citation (ABC) is a data mining tool extracting strain related publications, patents, nucleotide sequences and genome information from public data sources to form a knowledge base. Reference Strain Catalogue (RSC) maintains a database of strains listed in International Standards Organization (ISO) and other international or regional standards. RSC allocates a unique identifier to strains recommended for use in diagnosis and quality control, and hence serves as a valuable cross-platform reference. WDCM provides free access to all these services at www.wdcm.org.National High Technology Research and Development Program of China [2014AA021501, 2014AA021503, 2015AA020108]; International S&T Cooperation Program of China (ISTCP) [2015DFG32550]; Bureau of Science & Technology for Development of Chinese Academy of Sciences (Strategic bio-resources information center) and Field Cloud Project of Chinese Academy of Sciences [XXH12503-05-01]. Funding for open access charge: National High Technology Research and Development Program of China [2014AA021501, 2014AA021503, 2015AA020108]; International S&T Cooperation Program of China (ISTCP) [2015DFG32550] ; Bureau of Science & Technology for Development of Chinese Academy of Sciences [Strategic bio-resources information center]; Field Cloud Project of Chinese Academy of Sciences [XXH12503-05-01].Oxford University PressUniversidade do MinhoWu, LinhuanSun, QinglanDesmeth, PhilippeSugawara, HideakiXu, ZhenghongMcCluskey, KevinSmith, DavidAlexander, VasilenkoLima, NelsonOhkuma, MoriyaRobert, VincentZhou, YuguangLi, JianhuiFan, GuomeiIngsriswang, SupawadeeOzerskaya, SvetlanaMa, Juncai20172017-01-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/1822/44352engWu, Linhuan; Sun, Qinglan; Desmeth, Philippe; Sugawara, Hideaki; Xu, Zhenghong; McCluskey, Kevin; Smith, David; Alexander, Vasilenko; Lima, Nelson; Ohkuma, Moriya; Robert, Vincent; Zhou, Yuguang; Li, Jianhui; Fan, Guomei; Ingsriswang, Supawadee; Ozerskaya, Svetlana; Ma, Juncai, World Data Centre for Microorganisms: an information infrastructure to explore and utilize preserved microbial strains worldwide. Nucleic Acids Research, 45(D1), D611-D618, 20170305-10481362-496210.1093/nar/gkw90328053166http://nar.oxfordjournals.org/info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-07-21T12:03:11Zoai:repositorium.sdum.uminho.pt:1822/44352Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T18:53:16.294918Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse |
dc.title.none.fl_str_mv |
World Data Centre for Microorganisms: an information infrastructure to explore and utilize preserved microbial strains worldwide |
title |
World Data Centre for Microorganisms: an information infrastructure to explore and utilize preserved microbial strains worldwide |
spellingShingle |
World Data Centre for Microorganisms: an information infrastructure to explore and utilize preserved microbial strains worldwide Wu, Linhuan Data mining Data information Culture Collections Science & Technology |
title_short |
World Data Centre for Microorganisms: an information infrastructure to explore and utilize preserved microbial strains worldwide |
title_full |
World Data Centre for Microorganisms: an information infrastructure to explore and utilize preserved microbial strains worldwide |
title_fullStr |
World Data Centre for Microorganisms: an information infrastructure to explore and utilize preserved microbial strains worldwide |
title_full_unstemmed |
World Data Centre for Microorganisms: an information infrastructure to explore and utilize preserved microbial strains worldwide |
title_sort |
World Data Centre for Microorganisms: an information infrastructure to explore and utilize preserved microbial strains worldwide |
author |
Wu, Linhuan |
author_facet |
Wu, Linhuan Sun, Qinglan Desmeth, Philippe Sugawara, Hideaki Xu, Zhenghong McCluskey, Kevin Smith, David Alexander, Vasilenko Lima, Nelson Ohkuma, Moriya Robert, Vincent Zhou, Yuguang Li, Jianhui Fan, Guomei Ingsriswang, Supawadee Ozerskaya, Svetlana Ma, Juncai |
author_role |
author |
author2 |
Sun, Qinglan Desmeth, Philippe Sugawara, Hideaki Xu, Zhenghong McCluskey, Kevin Smith, David Alexander, Vasilenko Lima, Nelson Ohkuma, Moriya Robert, Vincent Zhou, Yuguang Li, Jianhui Fan, Guomei Ingsriswang, Supawadee Ozerskaya, Svetlana Ma, Juncai |
author2_role |
author author author author author author author author author author author author author author author author |
dc.contributor.none.fl_str_mv |
Universidade do Minho |
dc.contributor.author.fl_str_mv |
Wu, Linhuan Sun, Qinglan Desmeth, Philippe Sugawara, Hideaki Xu, Zhenghong McCluskey, Kevin Smith, David Alexander, Vasilenko Lima, Nelson Ohkuma, Moriya Robert, Vincent Zhou, Yuguang Li, Jianhui Fan, Guomei Ingsriswang, Supawadee Ozerskaya, Svetlana Ma, Juncai |
dc.subject.por.fl_str_mv |
Data mining Data information Culture Collections Science & Technology |
topic |
Data mining Data information Culture Collections Science & Technology |
description |
The World Data Centre for Microorganisms (WDCM) was established 50 years ago as the data center of the World Federation for Culture Collections (WFCC) Microbial Resource Center (MIRCEN). WDCM aims to provide integrated information services using big data technology for microbial resource centers and microbiologists all over the world. Here, we provide an overview of WDCM including all of its integrated services. Culture Collections Information Worldwide (CCINFO) provides metadata information on 708 culture collections from 72 countries and regions. Global Catalogue of Microorganism (GCM) gathers strain catalogue information and provides a data retrieval, analysis, and visualization system of microbial resources. Currently, GCM includes more than 368,000 strains from 103 culture collections in 43 countries and regions. Analyzer of Bioresource Citation (ABC) is a data mining tool extracting strain related publications, patents, nucleotide sequences and genome information from public data sources to form a knowledge base. Reference Strain Catalogue (RSC) maintains a database of strains listed in International Standards Organization (ISO) and other international or regional standards. RSC allocates a unique identifier to strains recommended for use in diagnosis and quality control, and hence serves as a valuable cross-platform reference. WDCM provides free access to all these services at www.wdcm.org. |
publishDate |
2017 |
dc.date.none.fl_str_mv |
2017 2017-01-01T00:00:00Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://hdl.handle.net/1822/44352 |
url |
http://hdl.handle.net/1822/44352 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Wu, Linhuan; Sun, Qinglan; Desmeth, Philippe; Sugawara, Hideaki; Xu, Zhenghong; McCluskey, Kevin; Smith, David; Alexander, Vasilenko; Lima, Nelson; Ohkuma, Moriya; Robert, Vincent; Zhou, Yuguang; Li, Jianhui; Fan, Guomei; Ingsriswang, Supawadee; Ozerskaya, Svetlana; Ma, Juncai, World Data Centre for Microorganisms: an information infrastructure to explore and utilize preserved microbial strains worldwide. Nucleic Acids Research, 45(D1), D611-D618, 2017 0305-1048 1362-4962 10.1093/nar/gkw903 28053166 http://nar.oxfordjournals.org/ |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.publisher.none.fl_str_mv |
Oxford University Press |
publisher.none.fl_str_mv |
Oxford University Press |
dc.source.none.fl_str_mv |
reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação instacron:RCAAP |
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Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
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RCAAP |
institution |
RCAAP |
reponame_str |
Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
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Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
repository.name.fl_str_mv |
Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
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