The nucleation of protein crystals as a race against time with on- and off-pathways

Detalhes bibliográficos
Autor(a) principal: Cecília Ferreira
Data de Publicação: 2017
Outros Autores: Pedro M. Martins, Fernando A. Rocha, Ana M. Damas, Pablo Taboada, Silvia Barbosa
Tipo de documento: Artigo
Idioma: por
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: https://hdl.handle.net/10216/106257
Resumo: High supersaturation levels are a necessary but insufficient condition for the crystallization of purified proteins. Unlike most small molecules, proteins can take diverse aggregation pathways that make the outcome of crystallization assays quite unpredictable. Here, dynamic light scattering and optical microscopy were used to show that the nucleation of lysozyme crystals is preceded by an initial step of protein oligomerization and by the progressive formation of metastable clusters. Because these steps deplete the concentration of soluble monomers, the probability of obtaining protein crystals decreases as time progresses. Stochastic variations of the induction time are thus amplified to a point where fast crystallization can coexist with unyielding regimes in the same conditions. With an initial hydrodynamic radius of similar to 100 nm, the metastable clusters also promote the formation of protein crystals through a mechanism of heterogeneous nucleation. Crystal growth (on-pathway) takes place in parallel with cluster growth (off-pathway). The Janus-faced influence of the mesoscopic clusters is beneficial when it accelerates the formation of the first precrystalline nuclei and is detrimental as it depletes the solution of protein ready to crystallize. Choosing the right balance between the two effects is critical for determining the success of protein crystallization trials. The results presented here suggest that a mild oligomerization degree promotes the formation of a small number of metastable clusters which then catalyze the nucleation of well differentiated crystals.
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spelling The nucleation of protein crystals as a race against time with on- and off-pathwaysHigh supersaturation levels are a necessary but insufficient condition for the crystallization of purified proteins. Unlike most small molecules, proteins can take diverse aggregation pathways that make the outcome of crystallization assays quite unpredictable. Here, dynamic light scattering and optical microscopy were used to show that the nucleation of lysozyme crystals is preceded by an initial step of protein oligomerization and by the progressive formation of metastable clusters. Because these steps deplete the concentration of soluble monomers, the probability of obtaining protein crystals decreases as time progresses. Stochastic variations of the induction time are thus amplified to a point where fast crystallization can coexist with unyielding regimes in the same conditions. With an initial hydrodynamic radius of similar to 100 nm, the metastable clusters also promote the formation of protein crystals through a mechanism of heterogeneous nucleation. Crystal growth (on-pathway) takes place in parallel with cluster growth (off-pathway). The Janus-faced influence of the mesoscopic clusters is beneficial when it accelerates the formation of the first precrystalline nuclei and is detrimental as it depletes the solution of protein ready to crystallize. Choosing the right balance between the two effects is critical for determining the success of protein crystallization trials. The results presented here suggest that a mild oligomerization degree promotes the formation of a small number of metastable clusters which then catalyze the nucleation of well differentiated crystals.20172017-01-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttps://hdl.handle.net/10216/106257por0021-889810.1107/S1600576717007312Cecília FerreiraPedro M. MartinsFernando A. RochaAna M. DamasPablo TaboadaSilvia Barbosainfo:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-11-29T14:42:58Zoai:repositorio-aberto.up.pt:10216/106257Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-20T00:07:16.853580Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv The nucleation of protein crystals as a race against time with on- and off-pathways
title The nucleation of protein crystals as a race against time with on- and off-pathways
spellingShingle The nucleation of protein crystals as a race against time with on- and off-pathways
Cecília Ferreira
title_short The nucleation of protein crystals as a race against time with on- and off-pathways
title_full The nucleation of protein crystals as a race against time with on- and off-pathways
title_fullStr The nucleation of protein crystals as a race against time with on- and off-pathways
title_full_unstemmed The nucleation of protein crystals as a race against time with on- and off-pathways
title_sort The nucleation of protein crystals as a race against time with on- and off-pathways
author Cecília Ferreira
author_facet Cecília Ferreira
Pedro M. Martins
Fernando A. Rocha
Ana M. Damas
Pablo Taboada
Silvia Barbosa
author_role author
author2 Pedro M. Martins
Fernando A. Rocha
Ana M. Damas
Pablo Taboada
Silvia Barbosa
author2_role author
author
author
author
author
dc.contributor.author.fl_str_mv Cecília Ferreira
Pedro M. Martins
Fernando A. Rocha
Ana M. Damas
Pablo Taboada
Silvia Barbosa
description High supersaturation levels are a necessary but insufficient condition for the crystallization of purified proteins. Unlike most small molecules, proteins can take diverse aggregation pathways that make the outcome of crystallization assays quite unpredictable. Here, dynamic light scattering and optical microscopy were used to show that the nucleation of lysozyme crystals is preceded by an initial step of protein oligomerization and by the progressive formation of metastable clusters. Because these steps deplete the concentration of soluble monomers, the probability of obtaining protein crystals decreases as time progresses. Stochastic variations of the induction time are thus amplified to a point where fast crystallization can coexist with unyielding regimes in the same conditions. With an initial hydrodynamic radius of similar to 100 nm, the metastable clusters also promote the formation of protein crystals through a mechanism of heterogeneous nucleation. Crystal growth (on-pathway) takes place in parallel with cluster growth (off-pathway). The Janus-faced influence of the mesoscopic clusters is beneficial when it accelerates the formation of the first precrystalline nuclei and is detrimental as it depletes the solution of protein ready to crystallize. Choosing the right balance between the two effects is critical for determining the success of protein crystallization trials. The results presented here suggest that a mild oligomerization degree promotes the formation of a small number of metastable clusters which then catalyze the nucleation of well differentiated crystals.
publishDate 2017
dc.date.none.fl_str_mv 2017
2017-01-01T00:00:00Z
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dc.identifier.uri.fl_str_mv https://hdl.handle.net/10216/106257
url https://hdl.handle.net/10216/106257
dc.language.iso.fl_str_mv por
language por
dc.relation.none.fl_str_mv 0021-8898
10.1107/S1600576717007312
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