FUT2: filling the gap between genes and environment in Behçet's disease?

Detalhes bibliográficos
Autor(a) principal: Xavier, Joana
Data de Publicação: 2015
Outros Autores: Sousa, Inês, Matos, Mafalda, Sobral, João, Ghaderibarmi, Fahmida, Shahram, Farhad, Nadji, Abdolhadi, Oliveira, Manuela, Shafiee, Mojarad, Abdollahi, Sadeghi, Davatchi, Oliveira, A.
Tipo de documento: Artigo
Idioma: por
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10174/13973
https://doi.org/10.1136/annrheumdis-2013-204475
Resumo: Background Behçet’s disease (BD) is a multisystemic immune and inflammatory disorder whose aetiology remains unclear. In order to identify novel susceptibility loci, we performed the first genome-wide association study (GWAS) for BD in the Iranian population using a DNA pooling strategy. Methods Two replicate pools of 292 BD cases and of 294 age- and sex-matched controls were allelotyped in quadruplicate on the Affymetrix Human SNP Array 6.0 arrays. The SNPs were ranked by relative allele score difference between cases and controls and 47 out of the 51 top markers were technically validated through individually genotyping. Replication of validated SNPs was performed in an independent Iranian dataset of 684 cases and 532 controls. Results In addition to the HLA-B locus, rs7528842 in a gene desert on chromosome 1p21.2, and rs632111 at the 3´UTR of FUT2 were associated in both the discovery and replication datasets (individually and in combination). However, only the FUT2 SNP has been associated in a previous GWAS for BD in Turkish [Remmers et al., 2010; Kirino et al., 2013]. Fine-mapping of FUT2 in the full Iranian dataset revealed additional associations in 5 coding SNPs (2.97E-06<P<1.34E-04), including the rs601338 non-sense (W143X) variant which, in Caucasians, determines the secretion of the H antigen (precursor of the ABO blood group antigens) in body fluids and on the intestinal mucosa. Meta-analysis with the Turkish GWAS data strengthened the FUT2 associations (4.78E-09<P<1.66E-07). Discussion The non-secretor phenotype affects mucosal glycosylation, which may explain its known association with dysbiosis and altered susceptibility to infections. This different antigenic stimulation in early life and consequent increased propensity for auto-immunity and inflammation may contribute to BD development. While confirming the well-established association of the HLA-B locus with BD, this study established for the first time a putative link between genes and environment in the etiopathogenesis of BD.
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spelling FUT2: filling the gap between genes and environment in Behçet's disease?Behçet’s diseaseFUT2, GWASDNA poolingABO secretor phenotypeBackground Behçet’s disease (BD) is a multisystemic immune and inflammatory disorder whose aetiology remains unclear. In order to identify novel susceptibility loci, we performed the first genome-wide association study (GWAS) for BD in the Iranian population using a DNA pooling strategy. Methods Two replicate pools of 292 BD cases and of 294 age- and sex-matched controls were allelotyped in quadruplicate on the Affymetrix Human SNP Array 6.0 arrays. The SNPs were ranked by relative allele score difference between cases and controls and 47 out of the 51 top markers were technically validated through individually genotyping. Replication of validated SNPs was performed in an independent Iranian dataset of 684 cases and 532 controls. Results In addition to the HLA-B locus, rs7528842 in a gene desert on chromosome 1p21.2, and rs632111 at the 3´UTR of FUT2 were associated in both the discovery and replication datasets (individually and in combination). However, only the FUT2 SNP has been associated in a previous GWAS for BD in Turkish [Remmers et al., 2010; Kirino et al., 2013]. Fine-mapping of FUT2 in the full Iranian dataset revealed additional associations in 5 coding SNPs (2.97E-06<P<1.34E-04), including the rs601338 non-sense (W143X) variant which, in Caucasians, determines the secretion of the H antigen (precursor of the ABO blood group antigens) in body fluids and on the intestinal mucosa. Meta-analysis with the Turkish GWAS data strengthened the FUT2 associations (4.78E-09<P<1.66E-07). Discussion The non-secretor phenotype affects mucosal glycosylation, which may explain its known association with dysbiosis and altered susceptibility to infections. This different antigenic stimulation in early life and consequent increased propensity for auto-immunity and inflammation may contribute to BD development. While confirming the well-established association of the HLA-B locus with BD, this study established for the first time a putative link between genes and environment in the etiopathogenesis of BD.Annals of the Rheumatic Diseases2015-04-07T09:45:29Z2015-04-072015-03-25T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://hdl.handle.net/10174/13973http://hdl.handle.net/10174/13973https://doi.org/10.1136/annrheumdis-2013-204475porXavier, J., Sousa, I.,..Oliveira, M., Oliveira, A. S., (2015).FUT2: filling the gap between genes and environment in Behçet's disease?Annals of the Rheumatic Diseases.2015 Mar;74(3):618-24. doi: 10.1136/annrheumdis-2013-204475. Epub 2013 Dec 10.ndndndndndndndmmo@uevora.ptNiloofarBaharFereydounSofia572Xavier, JoanaSousa, InêsMatos, MafaldaSobral, JoãoGhaderibarmi, FahmidaShahram, FarhadNadji, AbdolhadiOliveira, ManuelaShafiee, MojaradAbdollahi, SadeghiDavatchiOliveira, A.info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2024-01-03T18:59:48Zoai:dspace.uevora.pt:10174/13973Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-20T01:07:17.697294Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv FUT2: filling the gap between genes and environment in Behçet's disease?
title FUT2: filling the gap between genes and environment in Behçet's disease?
spellingShingle FUT2: filling the gap between genes and environment in Behçet's disease?
Xavier, Joana
Behçet’s disease
FUT2, GWAS
DNA pooling
ABO secretor phenotype
title_short FUT2: filling the gap between genes and environment in Behçet's disease?
title_full FUT2: filling the gap between genes and environment in Behçet's disease?
title_fullStr FUT2: filling the gap between genes and environment in Behçet's disease?
title_full_unstemmed FUT2: filling the gap between genes and environment in Behçet's disease?
title_sort FUT2: filling the gap between genes and environment in Behçet's disease?
author Xavier, Joana
author_facet Xavier, Joana
Sousa, Inês
Matos, Mafalda
Sobral, João
Ghaderibarmi, Fahmida
Shahram, Farhad
Nadji, Abdolhadi
Oliveira, Manuela
Shafiee, Mojarad
Abdollahi, Sadeghi
Davatchi
Oliveira, A.
author_role author
author2 Sousa, Inês
Matos, Mafalda
Sobral, João
Ghaderibarmi, Fahmida
Shahram, Farhad
Nadji, Abdolhadi
Oliveira, Manuela
Shafiee, Mojarad
Abdollahi, Sadeghi
Davatchi
Oliveira, A.
author2_role author
author
author
author
author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Xavier, Joana
Sousa, Inês
Matos, Mafalda
Sobral, João
Ghaderibarmi, Fahmida
Shahram, Farhad
Nadji, Abdolhadi
Oliveira, Manuela
Shafiee, Mojarad
Abdollahi, Sadeghi
Davatchi
Oliveira, A.
dc.subject.por.fl_str_mv Behçet’s disease
FUT2, GWAS
DNA pooling
ABO secretor phenotype
topic Behçet’s disease
FUT2, GWAS
DNA pooling
ABO secretor phenotype
description Background Behçet’s disease (BD) is a multisystemic immune and inflammatory disorder whose aetiology remains unclear. In order to identify novel susceptibility loci, we performed the first genome-wide association study (GWAS) for BD in the Iranian population using a DNA pooling strategy. Methods Two replicate pools of 292 BD cases and of 294 age- and sex-matched controls were allelotyped in quadruplicate on the Affymetrix Human SNP Array 6.0 arrays. The SNPs were ranked by relative allele score difference between cases and controls and 47 out of the 51 top markers were technically validated through individually genotyping. Replication of validated SNPs was performed in an independent Iranian dataset of 684 cases and 532 controls. Results In addition to the HLA-B locus, rs7528842 in a gene desert on chromosome 1p21.2, and rs632111 at the 3´UTR of FUT2 were associated in both the discovery and replication datasets (individually and in combination). However, only the FUT2 SNP has been associated in a previous GWAS for BD in Turkish [Remmers et al., 2010; Kirino et al., 2013]. Fine-mapping of FUT2 in the full Iranian dataset revealed additional associations in 5 coding SNPs (2.97E-06<P<1.34E-04), including the rs601338 non-sense (W143X) variant which, in Caucasians, determines the secretion of the H antigen (precursor of the ABO blood group antigens) in body fluids and on the intestinal mucosa. Meta-analysis with the Turkish GWAS data strengthened the FUT2 associations (4.78E-09<P<1.66E-07). Discussion The non-secretor phenotype affects mucosal glycosylation, which may explain its known association with dysbiosis and altered susceptibility to infections. This different antigenic stimulation in early life and consequent increased propensity for auto-immunity and inflammation may contribute to BD development. While confirming the well-established association of the HLA-B locus with BD, this study established for the first time a putative link between genes and environment in the etiopathogenesis of BD.
publishDate 2015
dc.date.none.fl_str_mv 2015-04-07T09:45:29Z
2015-04-07
2015-03-25T00:00:00Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10174/13973
http://hdl.handle.net/10174/13973
https://doi.org/10.1136/annrheumdis-2013-204475
url http://hdl.handle.net/10174/13973
https://doi.org/10.1136/annrheumdis-2013-204475
dc.language.iso.fl_str_mv por
language por
dc.relation.none.fl_str_mv Xavier, J., Sousa, I.,..Oliveira, M., Oliveira, A. S., (2015).FUT2: filling the gap between genes and environment in Behçet's disease?Annals of the Rheumatic Diseases.2015 Mar;74(3):618-24. doi: 10.1136/annrheumdis-2013-204475. Epub 2013 Dec 10.
nd
nd
nd
nd
nd
nd
nd
mmo@uevora.pt
Niloofar
Bahar
Fereydoun
Sofia
572
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv Annals of the Rheumatic Diseases
publisher.none.fl_str_mv Annals of the Rheumatic Diseases
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
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instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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