Early Detection of COVID-19 in Portugal: Use of Clinical Records

Detalhes bibliográficos
Autor(a) principal: Torres, Ana Rita
Data de Publicação: 2021
Outros Autores: Silva, Susana, Kislaya, Irina, Martins, João Pedro, Matias Dias, Carlos, Rodrigues, Ana Paula
Tipo de documento: Artigo
Idioma: por
eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: https://www.actamedicaportuguesa.com/revista/index.php/amp/article/view/14593
Resumo: Introduction: Syndromic surveillance allows early detection of changes in the population’s morbidity pattern. The aim of this study is to evaluate the usefulness of indicators related to access to healthcare services, in COVID-19 surveillance.Material and Methods: A time series analysis was performed using the weekly incidence rate of COVID-19 in Mainland Portugal, between weeks 14/2020 (March 30 to April 5) and 25/2020 (June 15 to 21), and six indicators: 1) COVID-19 consultations in primary healthcare; 2) number of COVID-19 emergency department visits; 3) number of emergency department visits due to viral pneumonia; 4) number of hospitalizations due to viral pneumonia; 5) proportion of emergency department visits due to viral pneumonia; and 6) proportion of hospitalizations for viral pneumonia. Pearson correlation and cross-correlations were computed.Results: A strong correlation was found between the weekly incidence rate of COVID-19 and all indicators. [(1) 0.76; (2) 0.82; (3) 0.77; (4) 0.84; (5) 0.86; e (6) 0.90]. Emergency department visits and hospitalizations for viral pneumonia detect variations in the frequency of the disease with a one week lag compared to the incidence rate of COVID-19, in one week. COVID-19 consultations in primary healthcare and emergency department visits trail behind the incidence rate of COVID-19, in one week. The proportion of viral pneumonias in emergency department visits, or hospitalizations, is temporally aligned with the weekly incidence rate of COVID-19.Discussion: The delay found in the COVID-19 primary healthcare consultations and emergency department visits, may be related to changes in access to healthcare services and clinical coding. Emergency department visits and hospitalizations for viral pneumonia may be useful in the early detection of COVID-19. Viral pneumonia may have been coded as being of unknown origin. Future monitoring of these indicators is necessary to ascertain whether the incidence of COVID-19 is significantly influenced by changes in testing strategies. The indicators described in this study will be an asset for the optimization of testing strategies, allocation of healthcare resources to the communities that are most vulnerable to severe morbidity and assessing vaccination impact. As such, surveillance systems based on clinical data will be a valuable complementary tool to SINAVE.Conclusion: The indicators under analysis could be used regularly, with special attention to viral pneumonias, to detect outbreaks of COVID-19. Information on pneumonia of unknown etiology may be considered in the surveillance of COVID-19.
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spelling Early Detection of COVID-19 in Portugal: Use of Clinical RecordsDeteção Precoce de COVID-19 em Portugal: Uso de Registos ClínicosCOVID-19Coronavirus Infections/diagnosisPneumoniaViral/diagnosisPortugalSARS-CoV-2Sentinel SurveillanceCOVID-19Infecções por Coronavírus/diagnósticoPneumonia Viral/diagnósticoPortugalSARS-CoV-2Vigilância de Evento SentinelaIntroduction: Syndromic surveillance allows early detection of changes in the population’s morbidity pattern. The aim of this study is to evaluate the usefulness of indicators related to access to healthcare services, in COVID-19 surveillance.Material and Methods: A time series analysis was performed using the weekly incidence rate of COVID-19 in Mainland Portugal, between weeks 14/2020 (March 30 to April 5) and 25/2020 (June 15 to 21), and six indicators: 1) COVID-19 consultations in primary healthcare; 2) number of COVID-19 emergency department visits; 3) number of emergency department visits due to viral pneumonia; 4) number of hospitalizations due to viral pneumonia; 5) proportion of emergency department visits due to viral pneumonia; and 6) proportion of hospitalizations for viral pneumonia. Pearson correlation and cross-correlations were computed.Results: A strong correlation was found between the weekly incidence rate of COVID-19 and all indicators. [(1) 0.76; (2) 0.82; (3) 0.77; (4) 0.84; (5) 0.86; e (6) 0.90]. Emergency department visits and hospitalizations for viral pneumonia detect variations in the frequency of the disease with a one week lag compared to the incidence rate of COVID-19, in one week. COVID-19 consultations in primary healthcare and emergency department visits trail behind the incidence rate of COVID-19, in one week. The proportion of viral pneumonias in emergency department visits, or hospitalizations, is temporally aligned with the weekly incidence rate of COVID-19.Discussion: The delay found in the COVID-19 primary healthcare consultations and emergency department visits, may be related to changes in access to healthcare services and clinical coding. Emergency department visits and hospitalizations for viral pneumonia may be useful in the early detection of COVID-19. Viral pneumonia may have been coded as being of unknown origin. Future monitoring of these indicators is necessary to ascertain whether the incidence of COVID-19 is significantly influenced by changes in testing strategies. The indicators described in this study will be an asset for the optimization of testing strategies, allocation of healthcare resources to the communities that are most vulnerable to severe morbidity and assessing vaccination impact. As such, surveillance systems based on clinical data will be a valuable complementary tool to SINAVE.Conclusion: The indicators under analysis could be used regularly, with special attention to viral pneumonias, to detect outbreaks of COVID-19. Information on pneumonia of unknown etiology may be considered in the surveillance of COVID-19.Introdução: A vigilância sindrómica permite a identificação precoce de alterações no padrão de morbilidade da população. Este estudo tem como objetivo avaliar a utilidade de indicadores relativos a cuidados de saúde primários e hospitalares, na vigilância da COVID-19.Material e Métodos: Foi realizada uma análise de séries temporais utilizando a taxa de incidência semanal de COVID-19 em Portugal Continental, entre as semanas 14/2020 (30 março a 05 abril) e 25/2020 (15 a 21 junho), e seis indicadores: 1) consultas em cuidados de saúde primários por COVID-19; 2) número de episódios de urgência por COVID-19; 3) número de episódios de urgência por pneumonia vírica; 4) número de internamentos por pneumonia vírica; 5) proporção de episódios de urgência por pneumonia vírica face ao total de episódios de urgência por pneumonia; e 6) proporção de internamentos por pneumonia vírica face ao total de internamentos por pneumonia. Foram calculadas correlações de Pearson e correlações cruzadas.Resultados: Foi encontrada uma correlação forte entre a taxa de incidência semanal de COVID-19 e todos os indicadores [(1) 0,76; (2) 0,82; (3) 0,77; (4) 0,84; (5) 0,86; e (6) 0,90]. Os episódios de urgência e internamento por pneumonias víricas detetam variações na frequência da doença, com uma semana de antecedência. As consultas em cuidados de saúde primários e urgências por COVID-19 registam uma semana de atraso relativamente à evolução da taxa de incidência. A proporção de pneumonias víricas face ao número de pneumonias em episódios de urgência, ou internamentos, encontra-se alinhada temporalmente com a evolução da taxa de incidência semanal de COVID-19.Discussão: O atraso encontrado no padrão de evolução de consultas em CSP, e de episódios de urgência por COVID-19 face à incidência de COVID-19, poderá estar relacionado com a reorganização dos serviços de saúde e criação de códigos específicos para estas consultas. Episódios de urgência e internamentos por pneumonia vírica poderão ser úteis para a deteção precoce de possíveis surtos de COVID-19. Pneumonias víricas poderão ter sido classificadas como pneumonias de causa indeterminada. A monitorização futura destes indicadores é necessária de modo a averiguar se a incidência de COVID-19 é influenciada significativamente por alterações na estratégia de testagem. Os indicadores deste trabalho serão uma mais valia para a adequação de estratégias de testagem, alocação de recursos de saúde a comunidades mais vulneráveis à morbilidade severa e avaliação de programas de vacinação. Como tal, os sistemas de vigilância com base em registos de saúde serão um complemento valioso ao SINAVE.Conclusão: Sugere-se que os indicadores em análise sejam utilizados de forma regular, com especial atenção à informação relativa a pneumonias víricas, como forma de detetar precocemente surtos de COVID-19. A informação relativa a pneumonias de causa indeterminada poderá ser considerada na monitorização da COVID-19.Ordem dos Médicos2021-03-01info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfapplication/pdfimage/jpegapplication/pdfimage/jpegimage/jpegimage/jpegimage/jpegimage/jpegimage/jpegapplication/vnd.openxmlformats-officedocument.wordprocessingml.documentapplication/vnd.openxmlformats-officedocument.wordprocessingml.documentapplication/vnd.openxmlformats-officedocument.wordprocessingml.documentapplication/pdfhttps://www.actamedicaportuguesa.com/revista/index.php/amp/article/view/14593oai:ojs.www.actamedicaportuguesa.com:article/14593Acta Médica Portuguesa; Vol. 34 No. 3 (2021): March; 176-184Acta Médica Portuguesa; Vol. 34 N.º 3 (2021): Março; 176-1841646-07580870-399Xreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAPporenghttps://www.actamedicaportuguesa.com/revista/index.php/amp/article/view/14593https://www.actamedicaportuguesa.com/revista/index.php/amp/article/view/14593/6271https://www.actamedicaportuguesa.com/revista/index.php/amp/article/view/14593/6722https://www.actamedicaportuguesa.com/revista/index.php/amp/article/view/14593/12785https://www.actamedicaportuguesa.com/revista/index.php/amp/article/view/14593/12836https://www.actamedicaportuguesa.com/revista/index.php/amp/article/view/14593/12940https://www.actamedicaportuguesa.com/revista/index.php/amp/article/view/14593/12941https://www.actamedicaportuguesa.com/revista/index.php/amp/article/view/14593/12942https://www.actamedicaportuguesa.com/revista/index.php/amp/article/view/14593/12943https://www.actamedicaportuguesa.com/revista/index.php/amp/article/view/14593/12944https://www.actamedicaportuguesa.com/revista/index.php/amp/article/view/14593/12945https://www.actamedicaportuguesa.com/revista/index.php/amp/article/view/14593/12947https://www.actamedicaportuguesa.com/revista/index.php/amp/article/view/14593/12948https://www.actamedicaportuguesa.com/revista/index.php/amp/article/view/14593/13026https://www.actamedicaportuguesa.com/revista/index.php/amp/article/view/14593/13032Direitos de Autor (c) 2021 Acta Médica Portuguesainfo:eu-repo/semantics/openAccessTorres, Ana RitaSilva, SusanaKislaya, IrinaMartins, João PedroMatias Dias, CarlosRodrigues, Ana Paula2022-12-20T11:07:15Zoai:ojs.www.actamedicaportuguesa.com:article/14593Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T16:20:29.723719Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Early Detection of COVID-19 in Portugal: Use of Clinical Records
Deteção Precoce de COVID-19 em Portugal: Uso de Registos Clínicos
title Early Detection of COVID-19 in Portugal: Use of Clinical Records
spellingShingle Early Detection of COVID-19 in Portugal: Use of Clinical Records
Torres, Ana Rita
COVID-19
Coronavirus Infections/diagnosis
Pneumonia
Viral/diagnosis
Portugal
SARS-CoV-2
Sentinel Surveillance
COVID-19
Infecções por Coronavírus/diagnóstico
Pneumonia Viral/diagnóstico
Portugal
SARS-CoV-2
Vigilância de Evento Sentinela
title_short Early Detection of COVID-19 in Portugal: Use of Clinical Records
title_full Early Detection of COVID-19 in Portugal: Use of Clinical Records
title_fullStr Early Detection of COVID-19 in Portugal: Use of Clinical Records
title_full_unstemmed Early Detection of COVID-19 in Portugal: Use of Clinical Records
title_sort Early Detection of COVID-19 in Portugal: Use of Clinical Records
author Torres, Ana Rita
author_facet Torres, Ana Rita
Silva, Susana
Kislaya, Irina
Martins, João Pedro
Matias Dias, Carlos
Rodrigues, Ana Paula
author_role author
author2 Silva, Susana
Kislaya, Irina
Martins, João Pedro
Matias Dias, Carlos
Rodrigues, Ana Paula
author2_role author
author
author
author
author
dc.contributor.author.fl_str_mv Torres, Ana Rita
Silva, Susana
Kislaya, Irina
Martins, João Pedro
Matias Dias, Carlos
Rodrigues, Ana Paula
dc.subject.por.fl_str_mv COVID-19
Coronavirus Infections/diagnosis
Pneumonia
Viral/diagnosis
Portugal
SARS-CoV-2
Sentinel Surveillance
COVID-19
Infecções por Coronavírus/diagnóstico
Pneumonia Viral/diagnóstico
Portugal
SARS-CoV-2
Vigilância de Evento Sentinela
topic COVID-19
Coronavirus Infections/diagnosis
Pneumonia
Viral/diagnosis
Portugal
SARS-CoV-2
Sentinel Surveillance
COVID-19
Infecções por Coronavírus/diagnóstico
Pneumonia Viral/diagnóstico
Portugal
SARS-CoV-2
Vigilância de Evento Sentinela
description Introduction: Syndromic surveillance allows early detection of changes in the population’s morbidity pattern. The aim of this study is to evaluate the usefulness of indicators related to access to healthcare services, in COVID-19 surveillance.Material and Methods: A time series analysis was performed using the weekly incidence rate of COVID-19 in Mainland Portugal, between weeks 14/2020 (March 30 to April 5) and 25/2020 (June 15 to 21), and six indicators: 1) COVID-19 consultations in primary healthcare; 2) number of COVID-19 emergency department visits; 3) number of emergency department visits due to viral pneumonia; 4) number of hospitalizations due to viral pneumonia; 5) proportion of emergency department visits due to viral pneumonia; and 6) proportion of hospitalizations for viral pneumonia. Pearson correlation and cross-correlations were computed.Results: A strong correlation was found between the weekly incidence rate of COVID-19 and all indicators. [(1) 0.76; (2) 0.82; (3) 0.77; (4) 0.84; (5) 0.86; e (6) 0.90]. Emergency department visits and hospitalizations for viral pneumonia detect variations in the frequency of the disease with a one week lag compared to the incidence rate of COVID-19, in one week. COVID-19 consultations in primary healthcare and emergency department visits trail behind the incidence rate of COVID-19, in one week. The proportion of viral pneumonias in emergency department visits, or hospitalizations, is temporally aligned with the weekly incidence rate of COVID-19.Discussion: The delay found in the COVID-19 primary healthcare consultations and emergency department visits, may be related to changes in access to healthcare services and clinical coding. Emergency department visits and hospitalizations for viral pneumonia may be useful in the early detection of COVID-19. Viral pneumonia may have been coded as being of unknown origin. Future monitoring of these indicators is necessary to ascertain whether the incidence of COVID-19 is significantly influenced by changes in testing strategies. The indicators described in this study will be an asset for the optimization of testing strategies, allocation of healthcare resources to the communities that are most vulnerable to severe morbidity and assessing vaccination impact. As such, surveillance systems based on clinical data will be a valuable complementary tool to SINAVE.Conclusion: The indicators under analysis could be used regularly, with special attention to viral pneumonias, to detect outbreaks of COVID-19. Information on pneumonia of unknown etiology may be considered in the surveillance of COVID-19.
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dc.rights.driver.fl_str_mv Direitos de Autor (c) 2021 Acta Médica Portuguesa
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publisher.none.fl_str_mv Ordem dos Médicos
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Acta Médica Portuguesa; Vol. 34 N.º 3 (2021): Março; 176-184
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