Binomial transformation applied to presence-absence community data

Detalhes bibliográficos
Autor(a) principal: Conde, Anxo
Data de Publicação: 2022
Outros Autores: Leandro, Sérgio, Maranhão, Paulo, Domínguez, Jorge
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10400.8/8706
Resumo: MARE multipolar RD&I Centre was funded by the Fundaç˜ao para a Ciência e Tecnologia (FCT) through the strategic project UID/MAR/04292/2019. AC was funded by the Integrated Programme of SR&TD “Smart Valorization of Endogenous Marine Biological Resources Under a Changing Climate” (reference Centro-01-0145-FEDER-000018), cofunded by Centro 2020 program, Portugal 2020, European Union, through the European Regional Development Fund.
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spelling Binomial transformation applied to presence-absence community dataDistance matricesMantel testMultivariate analysisOrdinationsIndicator SpeciesEcological gradientsMARE multipolar RD&I Centre was funded by the Fundaç˜ao para a Ciência e Tecnologia (FCT) through the strategic project UID/MAR/04292/2019. AC was funded by the Integrated Programme of SR&TD “Smart Valorization of Endogenous Marine Biological Resources Under a Changing Climate” (reference Centro-01-0145-FEDER-000018), cofunded by Centro 2020 program, Portugal 2020, European Union, through the European Regional Development Fund.Community data is often transformed or standardized to meet the requirements and assumptions of multivariate analysis. While these methods are usually appropriate for abundance data, they are seldom applied to presence absence data. Here, a method of transforming a binary matrix using the binomial probability is described. Number of trials (n), number of successes (x) and probability of success (p) are necessary to compute the binomial probability. Successes were defined as the number of sites where the species occurrence can be considered; trials were equal and greater than the number of successes. The actual occurrence of each species along the gradient was considered the probability of success. The Mantel statistic associated with the binomially transformed distance matrix and the distance matrix based on binary data were used to choose an appropriate binomial transformation. The chosen binomial transformation gave greater value to species indicating habitat typologies. Binomially transformed data rendered results closer to expectations.ElsevierIC-OnlineConde, AnxoLeandro, SérgioMaranhão, PauloDomínguez, Jorge2023-07-28T15:11:34Z20222022-01-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10400.8/8706engAnxo Conde, Sérgio Leandro, Paulo Maranhão, Jorge Domínguez, Binomial transformation applied to presence-absence community data, Ecological Informatics, Volume 70, 2022, 101753, ISSN 1574-9541, https://doi.org/10.1016/j.ecoinf.2022.101753.1574-954110.1016/j.ecoinf.2022.101753metadata only accessinfo:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2024-01-17T15:58:00Zoai:iconline.ipleiria.pt:10400.8/8706Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-20T01:51:22.513714Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Binomial transformation applied to presence-absence community data
title Binomial transformation applied to presence-absence community data
spellingShingle Binomial transformation applied to presence-absence community data
Conde, Anxo
Distance matrices
Mantel test
Multivariate analysis
Ordinations
Indicator Species
Ecological gradients
title_short Binomial transformation applied to presence-absence community data
title_full Binomial transformation applied to presence-absence community data
title_fullStr Binomial transformation applied to presence-absence community data
title_full_unstemmed Binomial transformation applied to presence-absence community data
title_sort Binomial transformation applied to presence-absence community data
author Conde, Anxo
author_facet Conde, Anxo
Leandro, Sérgio
Maranhão, Paulo
Domínguez, Jorge
author_role author
author2 Leandro, Sérgio
Maranhão, Paulo
Domínguez, Jorge
author2_role author
author
author
dc.contributor.none.fl_str_mv IC-Online
dc.contributor.author.fl_str_mv Conde, Anxo
Leandro, Sérgio
Maranhão, Paulo
Domínguez, Jorge
dc.subject.por.fl_str_mv Distance matrices
Mantel test
Multivariate analysis
Ordinations
Indicator Species
Ecological gradients
topic Distance matrices
Mantel test
Multivariate analysis
Ordinations
Indicator Species
Ecological gradients
description MARE multipolar RD&I Centre was funded by the Fundaç˜ao para a Ciência e Tecnologia (FCT) through the strategic project UID/MAR/04292/2019. AC was funded by the Integrated Programme of SR&TD “Smart Valorization of Endogenous Marine Biological Resources Under a Changing Climate” (reference Centro-01-0145-FEDER-000018), cofunded by Centro 2020 program, Portugal 2020, European Union, through the European Regional Development Fund.
publishDate 2022
dc.date.none.fl_str_mv 2022
2022-01-01T00:00:00Z
2023-07-28T15:11:34Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10400.8/8706
url http://hdl.handle.net/10400.8/8706
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Anxo Conde, Sérgio Leandro, Paulo Maranhão, Jorge Domínguez, Binomial transformation applied to presence-absence community data, Ecological Informatics, Volume 70, 2022, 101753, ISSN 1574-9541, https://doi.org/10.1016/j.ecoinf.2022.101753.
1574-9541
10.1016/j.ecoinf.2022.101753
dc.rights.driver.fl_str_mv metadata only access
info:eu-repo/semantics/openAccess
rights_invalid_str_mv metadata only access
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Elsevier
publisher.none.fl_str_mv Elsevier
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron:RCAAP
instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron_str RCAAP
institution RCAAP
reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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