An innovative Faster R-CNN-Based framework for breast cancer detection in MRI
Autor(a) principal: | |
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Data de Publicação: | 2023 |
Outros Autores: | , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
Texto Completo: | https://hdl.handle.net/1822/87266 |
Resumo: | Replacing lung cancer as the most commonly diagnosed cancer globally, breast cancer (BC) today accounts for 1 in 8 cancer diagnoses and a total of 2.3 million new cases in both sexes combined. An estimated 685,000 women died from BC in 2020, corresponding to 16% or 1 in every 6 cancer deaths in women. BC represents a quarter of a total of cancer cases in females and by far the most commonly diagnosed cancer in women in 2020. However, when detected in the early stages of the disease, treatment methods have proven to be very effective in increasing life expectancy and, in many cases, patients fully recover. Several medical imaging modalities, such as X-rays Mammography (MG), Ultrasound (US), Computer Tomography (CT), Magnetic Resonance Imaging (MRI), and Digital Tomosynthesis (DT) have been explored to support radiologists/physicians in clinical decision-making workflows for the detection and diagnosis of BC. In this work, we propose a novel Faster R-CNN-based framework to automate the detection of BC pathological Lesions in MRI. As a main contribution, we have developed and experimentally (statistically) validated an innovative method improving the “breast MRI preprocessing phase” to select the patient’s slices (images) and associated bounding boxes representing pathological lesions. In this way, it is possible to create a more robust training (benchmarking) dataset to feed Deep Learning (DL) models, reducing the computation time and the dimension of the dataset, and more importantly, to identify with high accuracy the specific regions (bounding boxes) for each of the patient’s images, in which a possible pathological lesion (tumor) has been identified. As a result, in an experimental setting using a fully annotated dataset (released to the public domain) comprising a total of 922 MRI-based BC patient cases, we have achieved, as the most accurate trained model, an accuracy rate of 97.83%, and subsequently, applying a ten-fold cross-validation method, a mean accuracy on the trained models of 94.46% and an associated standard deviation of 2.43%. |
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An innovative Faster R-CNN-Based framework for breast cancer detection in MRIBreast cancer detectionMagnetic resonance imagingComputer visionMachine learningDeep learningConvolutional neural networksReplacing lung cancer as the most commonly diagnosed cancer globally, breast cancer (BC) today accounts for 1 in 8 cancer diagnoses and a total of 2.3 million new cases in both sexes combined. An estimated 685,000 women died from BC in 2020, corresponding to 16% or 1 in every 6 cancer deaths in women. BC represents a quarter of a total of cancer cases in females and by far the most commonly diagnosed cancer in women in 2020. However, when detected in the early stages of the disease, treatment methods have proven to be very effective in increasing life expectancy and, in many cases, patients fully recover. Several medical imaging modalities, such as X-rays Mammography (MG), Ultrasound (US), Computer Tomography (CT), Magnetic Resonance Imaging (MRI), and Digital Tomosynthesis (DT) have been explored to support radiologists/physicians in clinical decision-making workflows for the detection and diagnosis of BC. In this work, we propose a novel Faster R-CNN-based framework to automate the detection of BC pathological Lesions in MRI. As a main contribution, we have developed and experimentally (statistically) validated an innovative method improving the “breast MRI preprocessing phase” to select the patient’s slices (images) and associated bounding boxes representing pathological lesions. In this way, it is possible to create a more robust training (benchmarking) dataset to feed Deep Learning (DL) models, reducing the computation time and the dimension of the dataset, and more importantly, to identify with high accuracy the specific regions (bounding boxes) for each of the patient’s images, in which a possible pathological lesion (tumor) has been identified. As a result, in an experimental setting using a fully annotated dataset (released to the public domain) comprising a total of 922 MRI-based BC patient cases, we have achieved, as the most accurate trained model, an accuracy rate of 97.83%, and subsequently, applying a ten-fold cross-validation method, a mean accuracy on the trained models of 94.46% and an associated standard deviation of 2.43%.This paper is financed by Instituto Politécnico de Setúbal, PortugalMultidisciplinary Digital Publishing Institute (MDPI)Universidade do MinhoRaimundo, João Nuno CentenoFontes, João Pedro PereiraMagalhães, Luís Gonzaga MendesGuevara Lopez, Miguel Angel2023-08-232023-08-23T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttps://hdl.handle.net/1822/87266engRaimundo, J.N.C.; Fontes, J.P.P.; Gonzaga Mendes Magalhães, L.; Guevara Lopez, M.A. An Innovative Faster R-CNN-Based Framework for Breast Cancer Detection in MRI. J. Imaging 2023, 9, 169. https://doi.org/10.3390/jimaging90901692313-433X10.3390/jimaging9090169169https://www.mdpi.com/2313-433X/9/9/169info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-11-18T01:17:01Zoai:repositorium.sdum.uminho.pt:1822/87266Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T22:53:57.859345Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse |
dc.title.none.fl_str_mv |
An innovative Faster R-CNN-Based framework for breast cancer detection in MRI |
title |
An innovative Faster R-CNN-Based framework for breast cancer detection in MRI |
spellingShingle |
An innovative Faster R-CNN-Based framework for breast cancer detection in MRI Raimundo, João Nuno Centeno Breast cancer detection Magnetic resonance imaging Computer vision Machine learning Deep learning Convolutional neural networks |
title_short |
An innovative Faster R-CNN-Based framework for breast cancer detection in MRI |
title_full |
An innovative Faster R-CNN-Based framework for breast cancer detection in MRI |
title_fullStr |
An innovative Faster R-CNN-Based framework for breast cancer detection in MRI |
title_full_unstemmed |
An innovative Faster R-CNN-Based framework for breast cancer detection in MRI |
title_sort |
An innovative Faster R-CNN-Based framework for breast cancer detection in MRI |
author |
Raimundo, João Nuno Centeno |
author_facet |
Raimundo, João Nuno Centeno Fontes, João Pedro Pereira Magalhães, Luís Gonzaga Mendes Guevara Lopez, Miguel Angel |
author_role |
author |
author2 |
Fontes, João Pedro Pereira Magalhães, Luís Gonzaga Mendes Guevara Lopez, Miguel Angel |
author2_role |
author author author |
dc.contributor.none.fl_str_mv |
Universidade do Minho |
dc.contributor.author.fl_str_mv |
Raimundo, João Nuno Centeno Fontes, João Pedro Pereira Magalhães, Luís Gonzaga Mendes Guevara Lopez, Miguel Angel |
dc.subject.por.fl_str_mv |
Breast cancer detection Magnetic resonance imaging Computer vision Machine learning Deep learning Convolutional neural networks |
topic |
Breast cancer detection Magnetic resonance imaging Computer vision Machine learning Deep learning Convolutional neural networks |
description |
Replacing lung cancer as the most commonly diagnosed cancer globally, breast cancer (BC) today accounts for 1 in 8 cancer diagnoses and a total of 2.3 million new cases in both sexes combined. An estimated 685,000 women died from BC in 2020, corresponding to 16% or 1 in every 6 cancer deaths in women. BC represents a quarter of a total of cancer cases in females and by far the most commonly diagnosed cancer in women in 2020. However, when detected in the early stages of the disease, treatment methods have proven to be very effective in increasing life expectancy and, in many cases, patients fully recover. Several medical imaging modalities, such as X-rays Mammography (MG), Ultrasound (US), Computer Tomography (CT), Magnetic Resonance Imaging (MRI), and Digital Tomosynthesis (DT) have been explored to support radiologists/physicians in clinical decision-making workflows for the detection and diagnosis of BC. In this work, we propose a novel Faster R-CNN-based framework to automate the detection of BC pathological Lesions in MRI. As a main contribution, we have developed and experimentally (statistically) validated an innovative method improving the “breast MRI preprocessing phase” to select the patient’s slices (images) and associated bounding boxes representing pathological lesions. In this way, it is possible to create a more robust training (benchmarking) dataset to feed Deep Learning (DL) models, reducing the computation time and the dimension of the dataset, and more importantly, to identify with high accuracy the specific regions (bounding boxes) for each of the patient’s images, in which a possible pathological lesion (tumor) has been identified. As a result, in an experimental setting using a fully annotated dataset (released to the public domain) comprising a total of 922 MRI-based BC patient cases, we have achieved, as the most accurate trained model, an accuracy rate of 97.83%, and subsequently, applying a ten-fold cross-validation method, a mean accuracy on the trained models of 94.46% and an associated standard deviation of 2.43%. |
publishDate |
2023 |
dc.date.none.fl_str_mv |
2023-08-23 2023-08-23T00:00:00Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
https://hdl.handle.net/1822/87266 |
url |
https://hdl.handle.net/1822/87266 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Raimundo, J.N.C.; Fontes, J.P.P.; Gonzaga Mendes Magalhães, L.; Guevara Lopez, M.A. An Innovative Faster R-CNN-Based Framework for Breast Cancer Detection in MRI. J. Imaging 2023, 9, 169. https://doi.org/10.3390/jimaging9090169 2313-433X 10.3390/jimaging9090169 169 https://www.mdpi.com/2313-433X/9/9/169 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.publisher.none.fl_str_mv |
Multidisciplinary Digital Publishing Institute (MDPI) |
publisher.none.fl_str_mv |
Multidisciplinary Digital Publishing Institute (MDPI) |
dc.source.none.fl_str_mv |
reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação instacron:RCAAP |
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Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
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RCAAP |
institution |
RCAAP |
reponame_str |
Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
collection |
Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
repository.name.fl_str_mv |
Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
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1799135137194049536 |