Accounting for uncertainty in predictions of a marine species: Integrating population genetics to verify past distributions

Detalhes bibliográficos
Autor(a) principal: Chefaoui, Rosa
Data de Publicação: 2017
Outros Autores: Serrao, Ester
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10400.1/12997
Resumo: We develop a new perspective on the uncertainties affecting the predictions of coastal species distributions using patterns of genetic diversity to assess the congruence of hindcasted distribution models. We model the niche of the subtidal seagrass Cymodocea nodosa, for which previous phylogeographic findings are used to contrast hypotheses for the Last Glacial Maximum (LGM) in the Mediterranean and adjacent Atlantic coastal regions. We focus on amelioration of sampling bias, and explore the influence of other sources of uncertainty such as the number of variables, Ocean General Circulation Models (OGCMs), and thresholds used. To do that, we test geographical and environmental filtering of presences, and a species-specific weighted filter related to political boundaries for background data. Contrary to our initial hypothesis that reducing sampling bias by means of geographical, environmental or background filtering would enhance predictive power and reliability of the models, none of these approaches consistently improved performance. These counter-intuitive results might be explained by the higher relative occurrence area (ROA) inherent to linear coastal study areas in relation to terrestrial regions, which may cause worse predictions and, thus, higher variability among models. We found that the Ocean General Circulation Models (OGCMs), the threshold and, to a smaller extent, the number of variables used, conditioned greatly the variability of the predictions in both accuracy and geographic range. Despite these uncertainties, all models achieved the goal of identifying long-term persistence regions (glacial refugia) where the highest genetic diversity for Cymodocea nodosa is found nowadays. However, only the CCSM corroborated the hypothesis, raised in previous studies, of a vicariant process in shaping the species' genetic structure. (C) 2017 Elsevier B.V. All rights reserved.
id RCAP_99f4b93b1fe8c3ae78fdff6e593a6b64
oai_identifier_str oai:sapientia.ualg.pt:10400.1/12997
network_acronym_str RCAP
network_name_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository_id_str 7160
spelling Accounting for uncertainty in predictions of a marine species: Integrating population genetics to verify past distributionsDistribution modelsGeographic distributionsSampling biasRange shiftsNichePerformanceInsightsRefugiaMapsAucWe develop a new perspective on the uncertainties affecting the predictions of coastal species distributions using patterns of genetic diversity to assess the congruence of hindcasted distribution models. We model the niche of the subtidal seagrass Cymodocea nodosa, for which previous phylogeographic findings are used to contrast hypotheses for the Last Glacial Maximum (LGM) in the Mediterranean and adjacent Atlantic coastal regions. We focus on amelioration of sampling bias, and explore the influence of other sources of uncertainty such as the number of variables, Ocean General Circulation Models (OGCMs), and thresholds used. To do that, we test geographical and environmental filtering of presences, and a species-specific weighted filter related to political boundaries for background data. Contrary to our initial hypothesis that reducing sampling bias by means of geographical, environmental or background filtering would enhance predictive power and reliability of the models, none of these approaches consistently improved performance. These counter-intuitive results might be explained by the higher relative occurrence area (ROA) inherent to linear coastal study areas in relation to terrestrial regions, which may cause worse predictions and, thus, higher variability among models. We found that the Ocean General Circulation Models (OGCMs), the threshold and, to a smaller extent, the number of variables used, conditioned greatly the variability of the predictions in both accuracy and geographic range. Despite these uncertainties, all models achieved the goal of identifying long-term persistence regions (glacial refugia) where the highest genetic diversity for Cymodocea nodosa is found nowadays. However, only the CCSM corroborated the hypothesis, raised in previous studies, of a vicariant process in shaping the species' genetic structure. (C) 2017 Elsevier B.V. All rights reserved.Fundacao para a Ciencia e a Tecnologia (FCT, Portugal) [SFRH/BPD/85040/2012]Pew Foundation (USA)[UID/Multi/04326/2013]ElsevierSapientiaChefaoui, RosaSerrao, Ester2019-11-20T15:07:21Z2017-092017-09-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfapplication/pdfhttp://hdl.handle.net/10400.1/12997eng0304-380010.1016/j.ecolmodel.2017.06.006info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-07-24T10:25:00Zoai:sapientia.ualg.pt:10400.1/12997Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T20:04:13.264887Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Accounting for uncertainty in predictions of a marine species: Integrating population genetics to verify past distributions
title Accounting for uncertainty in predictions of a marine species: Integrating population genetics to verify past distributions
spellingShingle Accounting for uncertainty in predictions of a marine species: Integrating population genetics to verify past distributions
Chefaoui, Rosa
Distribution models
Geographic distributions
Sampling bias
Range shifts
Niche
Performance
Insights
Refugia
Maps
Auc
title_short Accounting for uncertainty in predictions of a marine species: Integrating population genetics to verify past distributions
title_full Accounting for uncertainty in predictions of a marine species: Integrating population genetics to verify past distributions
title_fullStr Accounting for uncertainty in predictions of a marine species: Integrating population genetics to verify past distributions
title_full_unstemmed Accounting for uncertainty in predictions of a marine species: Integrating population genetics to verify past distributions
title_sort Accounting for uncertainty in predictions of a marine species: Integrating population genetics to verify past distributions
author Chefaoui, Rosa
author_facet Chefaoui, Rosa
Serrao, Ester
author_role author
author2 Serrao, Ester
author2_role author
dc.contributor.none.fl_str_mv Sapientia
dc.contributor.author.fl_str_mv Chefaoui, Rosa
Serrao, Ester
dc.subject.por.fl_str_mv Distribution models
Geographic distributions
Sampling bias
Range shifts
Niche
Performance
Insights
Refugia
Maps
Auc
topic Distribution models
Geographic distributions
Sampling bias
Range shifts
Niche
Performance
Insights
Refugia
Maps
Auc
description We develop a new perspective on the uncertainties affecting the predictions of coastal species distributions using patterns of genetic diversity to assess the congruence of hindcasted distribution models. We model the niche of the subtidal seagrass Cymodocea nodosa, for which previous phylogeographic findings are used to contrast hypotheses for the Last Glacial Maximum (LGM) in the Mediterranean and adjacent Atlantic coastal regions. We focus on amelioration of sampling bias, and explore the influence of other sources of uncertainty such as the number of variables, Ocean General Circulation Models (OGCMs), and thresholds used. To do that, we test geographical and environmental filtering of presences, and a species-specific weighted filter related to political boundaries for background data. Contrary to our initial hypothesis that reducing sampling bias by means of geographical, environmental or background filtering would enhance predictive power and reliability of the models, none of these approaches consistently improved performance. These counter-intuitive results might be explained by the higher relative occurrence area (ROA) inherent to linear coastal study areas in relation to terrestrial regions, which may cause worse predictions and, thus, higher variability among models. We found that the Ocean General Circulation Models (OGCMs), the threshold and, to a smaller extent, the number of variables used, conditioned greatly the variability of the predictions in both accuracy and geographic range. Despite these uncertainties, all models achieved the goal of identifying long-term persistence regions (glacial refugia) where the highest genetic diversity for Cymodocea nodosa is found nowadays. However, only the CCSM corroborated the hypothesis, raised in previous studies, of a vicariant process in shaping the species' genetic structure. (C) 2017 Elsevier B.V. All rights reserved.
publishDate 2017
dc.date.none.fl_str_mv 2017-09
2017-09-01T00:00:00Z
2019-11-20T15:07:21Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10400.1/12997
url http://hdl.handle.net/10400.1/12997
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 0304-3800
10.1016/j.ecolmodel.2017.06.006
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
application/pdf
dc.publisher.none.fl_str_mv Elsevier
publisher.none.fl_str_mv Elsevier
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron:RCAAP
instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron_str RCAAP
institution RCAAP
reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
repository.mail.fl_str_mv
_version_ 1799133278295293952