SpotOn: High Accuracy Identification of Protein-Protein Interface Hot-Spots
Autor(a) principal: | |
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Data de Publicação: | 2017 |
Outros Autores: | , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
Texto Completo: | http://hdl.handle.net/10316/108366 https://doi.org/10.1038/s41598-017-08321-2 |
Resumo: | We present SpotOn, a web server to identify and classify interfacial residues as Hot-Spots (HS) and Null-Spots (NS). SpotON implements a robust algorithm with a demonstrated accuracy of 0.95 and sensitivity of 0.98 on an independent test set. The predictor was developed using an ensemble machine learning approach with up-sampling of the minor class. It was trained on 53 complexes using various features, based on both protein 3D structure and sequence. The SpotOn web interface is freely available at: http://milou.science.uu.nl/services/SPOTON/ . |
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Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
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7160 |
spelling |
SpotOn: High Accuracy Identification of Protein-Protein Interface Hot-SpotsAnimalsBinding SitesHumansMachine LearningProtein BindingProtein Interaction MappingSequence Analysis, ProteinSoftwareWe present SpotOn, a web server to identify and classify interfacial residues as Hot-Spots (HS) and Null-Spots (NS). SpotON implements a robust algorithm with a demonstrated accuracy of 0.95 and sensitivity of 0.98 on an independent test set. The predictor was developed using an ensemble machine learning approach with up-sampling of the minor class. It was trained on 53 complexes using various features, based on both protein 3D structure and sequence. The SpotOn web interface is freely available at: http://milou.science.uu.nl/services/SPOTON/ .2017-08-14info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://hdl.handle.net/10316/108366http://hdl.handle.net/10316/108366https://doi.org/10.1038/s41598-017-08321-2eng2045-2322Moreira, Irina S.Koukos, Panagiotis I.Melo, RitaAlmeida, José G.Preto, Antonio J.Schaarschmidt, JoergTrellet, MikaelGümüş, Zeynep HCosta, JoaquimBonvin, Alexandre M. J. J.info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-08-25T13:15:48Zoai:estudogeral.uc.pt:10316/108366Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T21:24:40.027546Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse |
dc.title.none.fl_str_mv |
SpotOn: High Accuracy Identification of Protein-Protein Interface Hot-Spots |
title |
SpotOn: High Accuracy Identification of Protein-Protein Interface Hot-Spots |
spellingShingle |
SpotOn: High Accuracy Identification of Protein-Protein Interface Hot-Spots Moreira, Irina S. Animals Binding Sites Humans Machine Learning Protein Binding Protein Interaction Mapping Sequence Analysis, Protein Software |
title_short |
SpotOn: High Accuracy Identification of Protein-Protein Interface Hot-Spots |
title_full |
SpotOn: High Accuracy Identification of Protein-Protein Interface Hot-Spots |
title_fullStr |
SpotOn: High Accuracy Identification of Protein-Protein Interface Hot-Spots |
title_full_unstemmed |
SpotOn: High Accuracy Identification of Protein-Protein Interface Hot-Spots |
title_sort |
SpotOn: High Accuracy Identification of Protein-Protein Interface Hot-Spots |
author |
Moreira, Irina S. |
author_facet |
Moreira, Irina S. Koukos, Panagiotis I. Melo, Rita Almeida, José G. Preto, Antonio J. Schaarschmidt, Joerg Trellet, Mikael Gümüş, Zeynep H Costa, Joaquim Bonvin, Alexandre M. J. J. |
author_role |
author |
author2 |
Koukos, Panagiotis I. Melo, Rita Almeida, José G. Preto, Antonio J. Schaarschmidt, Joerg Trellet, Mikael Gümüş, Zeynep H Costa, Joaquim Bonvin, Alexandre M. J. J. |
author2_role |
author author author author author author author author author |
dc.contributor.author.fl_str_mv |
Moreira, Irina S. Koukos, Panagiotis I. Melo, Rita Almeida, José G. Preto, Antonio J. Schaarschmidt, Joerg Trellet, Mikael Gümüş, Zeynep H Costa, Joaquim Bonvin, Alexandre M. J. J. |
dc.subject.por.fl_str_mv |
Animals Binding Sites Humans Machine Learning Protein Binding Protein Interaction Mapping Sequence Analysis, Protein Software |
topic |
Animals Binding Sites Humans Machine Learning Protein Binding Protein Interaction Mapping Sequence Analysis, Protein Software |
description |
We present SpotOn, a web server to identify and classify interfacial residues as Hot-Spots (HS) and Null-Spots (NS). SpotON implements a robust algorithm with a demonstrated accuracy of 0.95 and sensitivity of 0.98 on an independent test set. The predictor was developed using an ensemble machine learning approach with up-sampling of the minor class. It was trained on 53 complexes using various features, based on both protein 3D structure and sequence. The SpotOn web interface is freely available at: http://milou.science.uu.nl/services/SPOTON/ . |
publishDate |
2017 |
dc.date.none.fl_str_mv |
2017-08-14 |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://hdl.handle.net/10316/108366 http://hdl.handle.net/10316/108366 https://doi.org/10.1038/s41598-017-08321-2 |
url |
http://hdl.handle.net/10316/108366 https://doi.org/10.1038/s41598-017-08321-2 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
2045-2322 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.source.none.fl_str_mv |
reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação instacron:RCAAP |
instname_str |
Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
instacron_str |
RCAAP |
institution |
RCAAP |
reponame_str |
Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
collection |
Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
repository.name.fl_str_mv |
Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
repository.mail.fl_str_mv |
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1799134130599886848 |