Polymorphisms within autophagy-related genes influence the risk of developing colorectal cancer: a meta-analysis of four large cohorts

Detalhes bibliográficos
Autor(a) principal: Sainz, Juan
Data de Publicação: 2021
Outros Autores: García-Verdejo, Francisco José, Martínez-Bueno, Manuel, Kumar, Abhishek, Sánchez-Maldonado, José Manuel, Díez-Villanueva, Anna, Vodičková, Ludmila, Vymetálková, Veronika, Marques, Maria Belém Sousa Sampaio, Ludovico, Paula
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/1822/72715
Resumo: The role of genetic variation in autophagy-related genes in modulating autophagy and cancer is poorly understood. Here, we comprehensively investigated the association of autophagy-related variants with colorectal cancer (CRC) risk and provide new insights about the molecular mechanisms underlying the associations. After meta-analysis of the genome-wide association study (GWAS) data from four independent European cohorts (8006 CRC cases and 7070 controls), two loci, <i>DAPK2</i> (<i>p</i> = 2.19 × 10<sup>−5</sup>) and <i>ATG5</i> (<i>p</i> = 6.28 × 10<sup>−4</sup>) were associated with the risk of CRC. Mechanistically, the <i>DAPK2</i><sub>rs11631973G</sub> allele was associated with IL1 β levels after the stimulation of peripheral blood mononuclear cells (PBMCs) with <i>Staphylococcus aureus</i> (<i>p</i> = 0.002), CD24 + CD38 + CD27 + IgM + B cell levels in blood (<i>p</i> = 0.0038) and serum levels of en-RAGE (<i>p</i> = 0.0068). <i>ATG5</i><sub>rs546456T</sub> allele was associated with TNF α and IL1 β levels after the stimulation of PBMCs with LPS (<i>p</i> = 0.0088 and <i>p</i> = 0.0076, respectively), CD14+CD16− cell levels in blood (<i>p</i> = 0.0068) and serum levels of CCL19 and cortisol (<i>p</i> = 0.0052 and <i>p</i> = 0.0074, respectively). Interestingly, no association with autophagy flux was observed. These results suggested an effect of the <i>DAPK2</i> and <i>ATG5</i> loci in the pathogenesis of CRC, likely through the modulation of host immune responses.
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spelling Polymorphisms within autophagy-related genes influence the risk of developing colorectal cancer: a meta-analysis of four large cohortsColorectal cancerAutophagyGenetic variantsSusceptibilityScience & TechnologyThe role of genetic variation in autophagy-related genes in modulating autophagy and cancer is poorly understood. Here, we comprehensively investigated the association of autophagy-related variants with colorectal cancer (CRC) risk and provide new insights about the molecular mechanisms underlying the associations. After meta-analysis of the genome-wide association study (GWAS) data from four independent European cohorts (8006 CRC cases and 7070 controls), two loci, <i>DAPK2</i> (<i>p</i> = 2.19 × 10<sup>−5</sup>) and <i>ATG5</i> (<i>p</i> = 6.28 × 10<sup>−4</sup>) were associated with the risk of CRC. Mechanistically, the <i>DAPK2</i><sub>rs11631973G</sub> allele was associated with IL1 β levels after the stimulation of peripheral blood mononuclear cells (PBMCs) with <i>Staphylococcus aureus</i> (<i>p</i> = 0.002), CD24 + CD38 + CD27 + IgM + B cell levels in blood (<i>p</i> = 0.0038) and serum levels of en-RAGE (<i>p</i> = 0.0068). <i>ATG5</i><sub>rs546456T</sub> allele was associated with TNF α and IL1 β levels after the stimulation of PBMCs with LPS (<i>p</i> = 0.0088 and <i>p</i> = 0.0076, respectively), CD14+CD16− cell levels in blood (<i>p</i> = 0.0068) and serum levels of CCL19 and cortisol (<i>p</i> = 0.0052 and <i>p</i> = 0.0074, respectively). Interestingly, no association with autophagy flux was observed. These results suggested an effect of the <i>DAPK2</i> and <i>ATG5</i> loci in the pathogenesis of CRC, likely through the modulation of host immune responses.This work was partially supported by grants from the Instituto de Salud Carlos III (Madrid, Spain; PI12/02688 and PI17/02256). CORSA was funded by the Austrian Research Promotion Agency (FFG) BRIDGE grant (no. 829675, to Andrea Gsur), the “Herzfelder’sche Familienstiftung” (grant to Andrea Gsur). Czech Republic CCS was funded by GACR grants (18–09709S, 19–10543S and 20–03997S), ProgresQ28/1.LF and UNCE/MED/006 grants. This article is based upon work from COST Action CA17118, supported by COST (European Cooperation in Science and Technology). A.K. is a recipient of a Ramalingaswami Re-Retry Faculty Fellowship (Grant; BT/RLF/Re-entry/38/2017) from the Department of Biotechnology (DBT), Government of India (GOI). V.M. received funding from the Agency for Management of University and Research Grants (AGAUR) of the Catalan Government grant 2017SGR723, the Instituto de Salud Carlos III, co-funded by FEDER funds–a way to build Europe–grants PI14-00613, PI17-00092 and the Spanish Association Against Cancer (AECC) Scientific Foundation grant GCTRA18022MORE. K.H. was supported by European Union Horizon 2020 grant No. 856620. We thank the CERCA Programme, Generalitat de Catalunya for institutional support.Multidisciplinary Digital Publishing Institute (MDPI)[et al.]Universidade do MinhoSainz, JuanGarcía-Verdejo, Francisco JoséMartínez-Bueno, ManuelKumar, AbhishekSánchez-Maldonado, José ManuelDíez-Villanueva, AnnaVodičková, LudmilaVymetálková, VeronikaMarques, Maria Belém Sousa SampaioLudovico, Paula2021-03-122021-03-12T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/1822/72715engSainz, J.; García-Verdejo, F.J.; Martínez-Bueno, M.; Kumar, A.; Sánchez-Maldonado, J.M.; Díez-Villanueva, A.; Vodičková, L.; Vymetálková, V.; Martin Sánchez, V.; Da Silva Filho, M.I.; Sampaio-Marques, B.; Brezina, S.; Butterbach, K.; ter Horst, R.; Hoffmeister, M.; Ludovico, P.; Jurado, M.; Li, Y.; Sánchez-Rovira, P.; Netea, M.G.; Gsur, A.; Vodička, P.; Moreno, V.; Hemminki, K.; Brenner, H.; Chang-Claude, J.; Försti, A. Polymorphisms within Autophagy-Related Genes Influence the Risk of Developing Colorectal Cancer: A Meta-Analysis of Four Large Cohorts. Cancers 2021, 13, 1258. https://doi.org/10.3390/cancers130612582072-669410.3390/cancers13061258https://www.mdpi.com/2072-6694/13/6/1258info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-07-21T12:01:40Zoai:repositorium.sdum.uminho.pt:1822/72715Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T18:51:37.039487Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Polymorphisms within autophagy-related genes influence the risk of developing colorectal cancer: a meta-analysis of four large cohorts
title Polymorphisms within autophagy-related genes influence the risk of developing colorectal cancer: a meta-analysis of four large cohorts
spellingShingle Polymorphisms within autophagy-related genes influence the risk of developing colorectal cancer: a meta-analysis of four large cohorts
Sainz, Juan
Colorectal cancer
Autophagy
Genetic variants
Susceptibility
Science & Technology
title_short Polymorphisms within autophagy-related genes influence the risk of developing colorectal cancer: a meta-analysis of four large cohorts
title_full Polymorphisms within autophagy-related genes influence the risk of developing colorectal cancer: a meta-analysis of four large cohorts
title_fullStr Polymorphisms within autophagy-related genes influence the risk of developing colorectal cancer: a meta-analysis of four large cohorts
title_full_unstemmed Polymorphisms within autophagy-related genes influence the risk of developing colorectal cancer: a meta-analysis of four large cohorts
title_sort Polymorphisms within autophagy-related genes influence the risk of developing colorectal cancer: a meta-analysis of four large cohorts
author Sainz, Juan
author_facet Sainz, Juan
García-Verdejo, Francisco José
Martínez-Bueno, Manuel
Kumar, Abhishek
Sánchez-Maldonado, José Manuel
Díez-Villanueva, Anna
Vodičková, Ludmila
Vymetálková, Veronika
Marques, Maria Belém Sousa Sampaio
Ludovico, Paula
author_role author
author2 García-Verdejo, Francisco José
Martínez-Bueno, Manuel
Kumar, Abhishek
Sánchez-Maldonado, José Manuel
Díez-Villanueva, Anna
Vodičková, Ludmila
Vymetálková, Veronika
Marques, Maria Belém Sousa Sampaio
Ludovico, Paula
author2_role author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv [et al.]
Universidade do Minho
dc.contributor.author.fl_str_mv Sainz, Juan
García-Verdejo, Francisco José
Martínez-Bueno, Manuel
Kumar, Abhishek
Sánchez-Maldonado, José Manuel
Díez-Villanueva, Anna
Vodičková, Ludmila
Vymetálková, Veronika
Marques, Maria Belém Sousa Sampaio
Ludovico, Paula
dc.subject.por.fl_str_mv Colorectal cancer
Autophagy
Genetic variants
Susceptibility
Science & Technology
topic Colorectal cancer
Autophagy
Genetic variants
Susceptibility
Science & Technology
description The role of genetic variation in autophagy-related genes in modulating autophagy and cancer is poorly understood. Here, we comprehensively investigated the association of autophagy-related variants with colorectal cancer (CRC) risk and provide new insights about the molecular mechanisms underlying the associations. After meta-analysis of the genome-wide association study (GWAS) data from four independent European cohorts (8006 CRC cases and 7070 controls), two loci, <i>DAPK2</i> (<i>p</i> = 2.19 × 10<sup>−5</sup>) and <i>ATG5</i> (<i>p</i> = 6.28 × 10<sup>−4</sup>) were associated with the risk of CRC. Mechanistically, the <i>DAPK2</i><sub>rs11631973G</sub> allele was associated with IL1 β levels after the stimulation of peripheral blood mononuclear cells (PBMCs) with <i>Staphylococcus aureus</i> (<i>p</i> = 0.002), CD24 + CD38 + CD27 + IgM + B cell levels in blood (<i>p</i> = 0.0038) and serum levels of en-RAGE (<i>p</i> = 0.0068). <i>ATG5</i><sub>rs546456T</sub> allele was associated with TNF α and IL1 β levels after the stimulation of PBMCs with LPS (<i>p</i> = 0.0088 and <i>p</i> = 0.0076, respectively), CD14+CD16− cell levels in blood (<i>p</i> = 0.0068) and serum levels of CCL19 and cortisol (<i>p</i> = 0.0052 and <i>p</i> = 0.0074, respectively). Interestingly, no association with autophagy flux was observed. These results suggested an effect of the <i>DAPK2</i> and <i>ATG5</i> loci in the pathogenesis of CRC, likely through the modulation of host immune responses.
publishDate 2021
dc.date.none.fl_str_mv 2021-03-12
2021-03-12T00:00:00Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/1822/72715
url http://hdl.handle.net/1822/72715
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Sainz, J.; García-Verdejo, F.J.; Martínez-Bueno, M.; Kumar, A.; Sánchez-Maldonado, J.M.; Díez-Villanueva, A.; Vodičková, L.; Vymetálková, V.; Martin Sánchez, V.; Da Silva Filho, M.I.; Sampaio-Marques, B.; Brezina, S.; Butterbach, K.; ter Horst, R.; Hoffmeister, M.; Ludovico, P.; Jurado, M.; Li, Y.; Sánchez-Rovira, P.; Netea, M.G.; Gsur, A.; Vodička, P.; Moreno, V.; Hemminki, K.; Brenner, H.; Chang-Claude, J.; Försti, A. Polymorphisms within Autophagy-Related Genes Influence the Risk of Developing Colorectal Cancer: A Meta-Analysis of Four Large Cohorts. Cancers 2021, 13, 1258. https://doi.org/10.3390/cancers13061258
2072-6694
10.3390/cancers13061258
https://www.mdpi.com/2072-6694/13/6/1258
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Multidisciplinary Digital Publishing Institute (MDPI)
publisher.none.fl_str_mv Multidisciplinary Digital Publishing Institute (MDPI)
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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instacron_str RCAAP
institution RCAAP
reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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