Identification of colorectal cancer associated biomarkers: an integrated analysis of miRNA expression

Detalhes bibliográficos
Autor(a) principal: Fonseca, André
Data de Publicação: 2021
Outros Autores: Ramalhete, Sara Ventura, Mestre, André, Neves, Ricardo Pires das, Marreiros, Ana, Castelo Branco, Pedro, Roberto, Vânia Palma
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10316/103554
https://doi.org/10.18632/aging.203556
Resumo: Colorectal cancer is one of the leading causes of cancer-related deaths worldwide. This complex disease still holds severe problems concerning diagnosis due to the high invasiveness nature of colonoscopy and the low accuracy of the alternative diagnostic methods. Additionally, patient heterogeneity even within the same stage is not properly reflected in the current stratification system. This scenario highlights the need for new biomarkers to improve non-invasive screenings and clinical management of patients. MicroRNAs (miRNAs) have emerged as good candidate biomarkers in cancer as they are stable molecules, easily measurable and detected in body fluids thus allowing for non-invasive diagnosis and/or prognosis. In this study, we performed an integrated analysis first using 4 different datasets (discovery cohorts) to identify miRNAs associated with colorectal cancer development, unveil their role in this disease by identifying putative targets and regulatory networks and investigate their ability to serve as biomarkers. We have identified 26 differentially expressed miRNAs which interact with frequently deregulated genes known to participate in commonly altered pathways in colorectal cancer. Most of these miRNAs have high diagnostic power, and their prognostic potential is evidenced by panels of 5 miRNAs able to predict the outcome of stage II and III colorectal cancer patients. Notably, 8 miRNAs were validated in three additional independent cohorts (validation cohorts) including a plasma cohort thus reinforcing the value of miRNAs as non-invasive biomarkers.
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spelling Identification of colorectal cancer associated biomarkers: an integrated analysis of miRNA expressionmicroRNAsbiomarkercolorectal cancerdiagnosisprognosisAdultAgedBiomarkers, TumorColorectal NeoplasmsFemaleGene Expression ProfilingGene Expression Regulation, NeoplasticHumansMaleMicroRNAsMiddle AgedColorectal cancer is one of the leading causes of cancer-related deaths worldwide. This complex disease still holds severe problems concerning diagnosis due to the high invasiveness nature of colonoscopy and the low accuracy of the alternative diagnostic methods. Additionally, patient heterogeneity even within the same stage is not properly reflected in the current stratification system. This scenario highlights the need for new biomarkers to improve non-invasive screenings and clinical management of patients. MicroRNAs (miRNAs) have emerged as good candidate biomarkers in cancer as they are stable molecules, easily measurable and detected in body fluids thus allowing for non-invasive diagnosis and/or prognosis. In this study, we performed an integrated analysis first using 4 different datasets (discovery cohorts) to identify miRNAs associated with colorectal cancer development, unveil their role in this disease by identifying putative targets and regulatory networks and investigate their ability to serve as biomarkers. We have identified 26 differentially expressed miRNAs which interact with frequently deregulated genes known to participate in commonly altered pathways in colorectal cancer. Most of these miRNAs have high diagnostic power, and their prognostic potential is evidenced by panels of 5 miRNAs able to predict the outcome of stage II and III colorectal cancer patients. Notably, 8 miRNAs were validated in three additional independent cohorts (validation cohorts) including a plasma cohort thus reinforcing the value of miRNAs as non-invasive biomarkers.Impact Journals LLC2021info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://hdl.handle.net/10316/103554http://hdl.handle.net/10316/103554https://doi.org/10.18632/aging.203556eng1945-4589Fonseca, AndréRamalhete, Sara VenturaMestre, AndréNeves, Ricardo Pires dasMarreiros, AnaCastelo Branco, PedroRoberto, Vânia Palmainfo:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2022-11-19T21:34:12Zoai:estudogeral.uc.pt:10316/103554Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T21:20:22.388531Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Identification of colorectal cancer associated biomarkers: an integrated analysis of miRNA expression
title Identification of colorectal cancer associated biomarkers: an integrated analysis of miRNA expression
spellingShingle Identification of colorectal cancer associated biomarkers: an integrated analysis of miRNA expression
Fonseca, André
microRNAs
biomarker
colorectal cancer
diagnosis
prognosis
Adult
Aged
Biomarkers, Tumor
Colorectal Neoplasms
Female
Gene Expression Profiling
Gene Expression Regulation, Neoplastic
Humans
Male
MicroRNAs
Middle Aged
title_short Identification of colorectal cancer associated biomarkers: an integrated analysis of miRNA expression
title_full Identification of colorectal cancer associated biomarkers: an integrated analysis of miRNA expression
title_fullStr Identification of colorectal cancer associated biomarkers: an integrated analysis of miRNA expression
title_full_unstemmed Identification of colorectal cancer associated biomarkers: an integrated analysis of miRNA expression
title_sort Identification of colorectal cancer associated biomarkers: an integrated analysis of miRNA expression
author Fonseca, André
author_facet Fonseca, André
Ramalhete, Sara Ventura
Mestre, André
Neves, Ricardo Pires das
Marreiros, Ana
Castelo Branco, Pedro
Roberto, Vânia Palma
author_role author
author2 Ramalhete, Sara Ventura
Mestre, André
Neves, Ricardo Pires das
Marreiros, Ana
Castelo Branco, Pedro
Roberto, Vânia Palma
author2_role author
author
author
author
author
author
dc.contributor.author.fl_str_mv Fonseca, André
Ramalhete, Sara Ventura
Mestre, André
Neves, Ricardo Pires das
Marreiros, Ana
Castelo Branco, Pedro
Roberto, Vânia Palma
dc.subject.por.fl_str_mv microRNAs
biomarker
colorectal cancer
diagnosis
prognosis
Adult
Aged
Biomarkers, Tumor
Colorectal Neoplasms
Female
Gene Expression Profiling
Gene Expression Regulation, Neoplastic
Humans
Male
MicroRNAs
Middle Aged
topic microRNAs
biomarker
colorectal cancer
diagnosis
prognosis
Adult
Aged
Biomarkers, Tumor
Colorectal Neoplasms
Female
Gene Expression Profiling
Gene Expression Regulation, Neoplastic
Humans
Male
MicroRNAs
Middle Aged
description Colorectal cancer is one of the leading causes of cancer-related deaths worldwide. This complex disease still holds severe problems concerning diagnosis due to the high invasiveness nature of colonoscopy and the low accuracy of the alternative diagnostic methods. Additionally, patient heterogeneity even within the same stage is not properly reflected in the current stratification system. This scenario highlights the need for new biomarkers to improve non-invasive screenings and clinical management of patients. MicroRNAs (miRNAs) have emerged as good candidate biomarkers in cancer as they are stable molecules, easily measurable and detected in body fluids thus allowing for non-invasive diagnosis and/or prognosis. In this study, we performed an integrated analysis first using 4 different datasets (discovery cohorts) to identify miRNAs associated with colorectal cancer development, unveil their role in this disease by identifying putative targets and regulatory networks and investigate their ability to serve as biomarkers. We have identified 26 differentially expressed miRNAs which interact with frequently deregulated genes known to participate in commonly altered pathways in colorectal cancer. Most of these miRNAs have high diagnostic power, and their prognostic potential is evidenced by panels of 5 miRNAs able to predict the outcome of stage II and III colorectal cancer patients. Notably, 8 miRNAs were validated in three additional independent cohorts (validation cohorts) including a plasma cohort thus reinforcing the value of miRNAs as non-invasive biomarkers.
publishDate 2021
dc.date.none.fl_str_mv 2021
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10316/103554
http://hdl.handle.net/10316/103554
https://doi.org/10.18632/aging.203556
url http://hdl.handle.net/10316/103554
https://doi.org/10.18632/aging.203556
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 1945-4589
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv Impact Journals LLC
publisher.none.fl_str_mv Impact Journals LLC
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron:RCAAP
instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron_str RCAAP
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collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
repository.mail.fl_str_mv
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