D-Track—A semi-automatic 3D video-tracking technique to analyse movements and routines of aquatic animals with application to captive dolphins

Detalhes bibliográficos
Autor(a) principal: Lopes, Patrícia Rachinas
Data de Publicação: 2018
Outros Autores: Ribeiro, Ricardo, Santos, Manuel Eduardo dos, Costa, Rui Miguel
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10400.12/6945
Resumo: Scoring and tracking animal movements manually is a time consuming and subjective process, susceptible to errors due to fatigue. Automated and semi-automated video-based tracking methods have been developed to overcome the errors and biases of manual analyses. In this manuscript we present D-Track, an open-source semi-automatic tracking system able to quantify the 3D trajectories of dolphins, non-invasively, in the water. This software produces a three-dimensional reconstruction of the pool and tracks the animal at different depths, using standard cameras. D-Track allows the determination of spatial preferences of the animals, their speed and its variations, and the identification of behavioural routines. We tested the system with two captive dolphins during different periods of the day. Both animals spent around 85% of the time at the surface of the Deep Area of their pool (5-meters depth). Both dolphins showed a stable average speed throughout 31 sessions, with slow speeds predominant (maximum 1.7 ms-1). Circular swimming was highly variable, with significant differences in the size and duration of the "circles", between animals, within-animals and across sessions. The D-Track system is a novel tool to study the behaviour of aquatic animals, and it represents a convenient and inexpensive solution for laboratories and marine parks to monitor the preferences and routines of their animals.
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spelling D-Track—A semi-automatic 3D video-tracking technique to analyse movements and routines of aquatic animals with application to captive dolphinsAnimalsBehaviorDolphinsImaging, Three-DimensionalMaleSoftwareSwimmingSwimming PoolsVideo RecordingScoring and tracking animal movements manually is a time consuming and subjective process, susceptible to errors due to fatigue. Automated and semi-automated video-based tracking methods have been developed to overcome the errors and biases of manual analyses. In this manuscript we present D-Track, an open-source semi-automatic tracking system able to quantify the 3D trajectories of dolphins, non-invasively, in the water. This software produces a three-dimensional reconstruction of the pool and tracks the animal at different depths, using standard cameras. D-Track allows the determination of spatial preferences of the animals, their speed and its variations, and the identification of behavioural routines. We tested the system with two captive dolphins during different periods of the day. Both animals spent around 85% of the time at the surface of the Deep Area of their pool (5-meters depth). Both dolphins showed a stable average speed throughout 31 sessions, with slow speeds predominant (maximum 1.7 ms-1). Circular swimming was highly variable, with significant differences in the size and duration of the "circles", between animals, within-animals and across sessions. The D-Track system is a novel tool to study the behaviour of aquatic animals, and it represents a convenient and inexpensive solution for laboratories and marine parks to monitor the preferences and routines of their animals.Howard Hughes Medical InstitutePublic Library of ScienceRepositório do ISPALopes, Patrícia RachinasRibeiro, RicardoSantos, Manuel Eduardo dosCosta, Rui Miguel2019-03-12T15:00:47Z2018-01-01T00:00:00Z2018-01-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10400.12/6945eng1932620310.1371/journal.pone.0201614info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2022-09-05T16:42:38Zoai:repositorio.ispa.pt:10400.12/6945Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T15:24:47.378701Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv D-Track—A semi-automatic 3D video-tracking technique to analyse movements and routines of aquatic animals with application to captive dolphins
title D-Track—A semi-automatic 3D video-tracking technique to analyse movements and routines of aquatic animals with application to captive dolphins
spellingShingle D-Track—A semi-automatic 3D video-tracking technique to analyse movements and routines of aquatic animals with application to captive dolphins
Lopes, Patrícia Rachinas
Animals
Behavior
Dolphins
Imaging, Three-Dimensional
Male
Software
Swimming
Swimming Pools
Video Recording
title_short D-Track—A semi-automatic 3D video-tracking technique to analyse movements and routines of aquatic animals with application to captive dolphins
title_full D-Track—A semi-automatic 3D video-tracking technique to analyse movements and routines of aquatic animals with application to captive dolphins
title_fullStr D-Track—A semi-automatic 3D video-tracking technique to analyse movements and routines of aquatic animals with application to captive dolphins
title_full_unstemmed D-Track—A semi-automatic 3D video-tracking technique to analyse movements and routines of aquatic animals with application to captive dolphins
title_sort D-Track—A semi-automatic 3D video-tracking technique to analyse movements and routines of aquatic animals with application to captive dolphins
author Lopes, Patrícia Rachinas
author_facet Lopes, Patrícia Rachinas
Ribeiro, Ricardo
Santos, Manuel Eduardo dos
Costa, Rui Miguel
author_role author
author2 Ribeiro, Ricardo
Santos, Manuel Eduardo dos
Costa, Rui Miguel
author2_role author
author
author
dc.contributor.none.fl_str_mv Repositório do ISPA
dc.contributor.author.fl_str_mv Lopes, Patrícia Rachinas
Ribeiro, Ricardo
Santos, Manuel Eduardo dos
Costa, Rui Miguel
dc.subject.por.fl_str_mv Animals
Behavior
Dolphins
Imaging, Three-Dimensional
Male
Software
Swimming
Swimming Pools
Video Recording
topic Animals
Behavior
Dolphins
Imaging, Three-Dimensional
Male
Software
Swimming
Swimming Pools
Video Recording
description Scoring and tracking animal movements manually is a time consuming and subjective process, susceptible to errors due to fatigue. Automated and semi-automated video-based tracking methods have been developed to overcome the errors and biases of manual analyses. In this manuscript we present D-Track, an open-source semi-automatic tracking system able to quantify the 3D trajectories of dolphins, non-invasively, in the water. This software produces a three-dimensional reconstruction of the pool and tracks the animal at different depths, using standard cameras. D-Track allows the determination of spatial preferences of the animals, their speed and its variations, and the identification of behavioural routines. We tested the system with two captive dolphins during different periods of the day. Both animals spent around 85% of the time at the surface of the Deep Area of their pool (5-meters depth). Both dolphins showed a stable average speed throughout 31 sessions, with slow speeds predominant (maximum 1.7 ms-1). Circular swimming was highly variable, with significant differences in the size and duration of the "circles", between animals, within-animals and across sessions. The D-Track system is a novel tool to study the behaviour of aquatic animals, and it represents a convenient and inexpensive solution for laboratories and marine parks to monitor the preferences and routines of their animals.
publishDate 2018
dc.date.none.fl_str_mv 2018-01-01T00:00:00Z
2018-01-01T00:00:00Z
2019-03-12T15:00:47Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10400.12/6945
url http://hdl.handle.net/10400.12/6945
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 19326203
10.1371/journal.pone.0201614
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
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dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Public Library of Science
publisher.none.fl_str_mv Public Library of Science
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron_str RCAAP
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reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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