Metadata standards and practical guidelines for specimen and DNA curation when building barcode reference libraries for aquatic life
| Autor(a) principal: | |
|---|---|
| Data de Publicação: | 2021 |
| Outros Autores: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
| Tipo de documento: | Artigo |
| Idioma: | eng |
| Título da fonte: | Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
| Texto Completo: | http://hdl.handle.net/1822/72999 |
Resumo: | DNA barcoding and metabarcoding is increasingly used to effectively and precisely assess and monitor biodiversity in aquatic ecosystems. As these methods rely on data availability and quality of barcode reference libraries, it is important to develop and follow best practices to ensure optimal quality and traceability of the metadata associated with the reference barcodes used for identification. Sufficient metadata, as well as vouchers, corresponding to each reference barcode must be available to ensure reliable barcode library curation and, thereby, provide trustworthy baselines for downstream molecular species identification. This document (1) specifies the data and metadata required to ensure the relevance, the accessibility and traceability of DNA barcodes and (2) specifies the recommendations for DNA harvesting and for the storage of both voucher specimens/samples and barcode data |
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Metadata standards and practical guidelines for specimen and DNA curation when building barcode reference libraries for aquatic lifeAquatic organismsDNABarcodeMetadataQualityReference libraryTraceabilityCiências Naturais::Ciências BiológicasEngenharia e Tecnologia::Engenharia do AmbienteDNA barcoding and metabarcoding is increasingly used to effectively and precisely assess and monitor biodiversity in aquatic ecosystems. As these methods rely on data availability and quality of barcode reference libraries, it is important to develop and follow best practices to ensure optimal quality and traceability of the metadata associated with the reference barcodes used for identification. Sufficient metadata, as well as vouchers, corresponding to each reference barcode must be available to ensure reliable barcode library curation and, thereby, provide trustworthy baselines for downstream molecular species identification. This document (1) specifies the data and metadata required to ensure the relevance, the accessibility and traceability of DNA barcodes and (2) specifies the recommendations for DNA harvesting and for the storage of both voucher specimens/samples and barcode data(undefined)Pensoft PublishersUniversidade do MinhoRimet, FrédéricAylagas, EvaBorja, ÁngelBouchez, AgnèsCanino, AlexisChauvin, ChristianChonova, TeofanaCiampor Jr, FedorCosta, Filipe O.Ferrari, Benoit J. D.Gastineau, RomainGoulon, ChloéGugger, MurielHolzmann, MariaJahn, RegineKahlert, MariaKusber, Wolf-HenningLaplace-Treyture, ChristopheLeese, FlorianLeliaert, FrederikMann, David G.Marchand, FrédéricMéléder, VonaPawlowski, JanRasconi, SerenaRivera, SinzianaRougerie, RodolpheSchweizer, MagaliTrobajo, RosaVasselon, ValentinVivien, RégisWeigand, AlexanderWitkowski, AndrzejZimmermann, JonasEkrem, Torbjørn20212021-01-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/1822/72999engRimet, F., Aylagas, E., Borja, Á., Bouchez, A., et al.(2021). Metadata standards and practical guidelines for specimen and DNA curation when building barcode reference libraries for aquatic life. Metabarcoding and Metagenomics, 52534-970810.3897/mbmg.5.58056https://mbmg.pensoft.net/article/58056/info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-07-21T12:38:07Zoai:repositorium.sdum.uminho.pt:1822/72999Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T19:34:30.357593Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse |
| dc.title.none.fl_str_mv |
Metadata standards and practical guidelines for specimen and DNA curation when building barcode reference libraries for aquatic life |
| title |
Metadata standards and practical guidelines for specimen and DNA curation when building barcode reference libraries for aquatic life |
| spellingShingle |
Metadata standards and practical guidelines for specimen and DNA curation when building barcode reference libraries for aquatic life Rimet, Frédéric Aquatic organisms DNA Barcode Metadata Quality Reference library Traceability Ciências Naturais::Ciências Biológicas Engenharia e Tecnologia::Engenharia do Ambiente |
| title_short |
Metadata standards and practical guidelines for specimen and DNA curation when building barcode reference libraries for aquatic life |
| title_full |
Metadata standards and practical guidelines for specimen and DNA curation when building barcode reference libraries for aquatic life |
| title_fullStr |
Metadata standards and practical guidelines for specimen and DNA curation when building barcode reference libraries for aquatic life |
| title_full_unstemmed |
Metadata standards and practical guidelines for specimen and DNA curation when building barcode reference libraries for aquatic life |
| title_sort |
Metadata standards and practical guidelines for specimen and DNA curation when building barcode reference libraries for aquatic life |
| author |
Rimet, Frédéric |
| author_facet |
Rimet, Frédéric Aylagas, Eva Borja, Ángel Bouchez, Agnès Canino, Alexis Chauvin, Christian Chonova, Teofana Ciampor Jr, Fedor Costa, Filipe O. Ferrari, Benoit J. D. Gastineau, Romain Goulon, Chloé Gugger, Muriel Holzmann, Maria Jahn, Regine Kahlert, Maria Kusber, Wolf-Henning Laplace-Treyture, Christophe Leese, Florian Leliaert, Frederik Mann, David G. Marchand, Frédéric Méléder, Vona Pawlowski, Jan Rasconi, Serena Rivera, Sinziana Rougerie, Rodolphe Schweizer, Magali Trobajo, Rosa Vasselon, Valentin Vivien, Régis Weigand, Alexander Witkowski, Andrzej Zimmermann, Jonas Ekrem, Torbjørn |
| author_role |
author |
| author2 |
Aylagas, Eva Borja, Ángel Bouchez, Agnès Canino, Alexis Chauvin, Christian Chonova, Teofana Ciampor Jr, Fedor Costa, Filipe O. Ferrari, Benoit J. D. Gastineau, Romain Goulon, Chloé Gugger, Muriel Holzmann, Maria Jahn, Regine Kahlert, Maria Kusber, Wolf-Henning Laplace-Treyture, Christophe Leese, Florian Leliaert, Frederik Mann, David G. Marchand, Frédéric Méléder, Vona Pawlowski, Jan Rasconi, Serena Rivera, Sinziana Rougerie, Rodolphe Schweizer, Magali Trobajo, Rosa Vasselon, Valentin Vivien, Régis Weigand, Alexander Witkowski, Andrzej Zimmermann, Jonas Ekrem, Torbjørn |
| author2_role |
author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author |
| dc.contributor.none.fl_str_mv |
Universidade do Minho |
| dc.contributor.author.fl_str_mv |
Rimet, Frédéric Aylagas, Eva Borja, Ángel Bouchez, Agnès Canino, Alexis Chauvin, Christian Chonova, Teofana Ciampor Jr, Fedor Costa, Filipe O. Ferrari, Benoit J. D. Gastineau, Romain Goulon, Chloé Gugger, Muriel Holzmann, Maria Jahn, Regine Kahlert, Maria Kusber, Wolf-Henning Laplace-Treyture, Christophe Leese, Florian Leliaert, Frederik Mann, David G. Marchand, Frédéric Méléder, Vona Pawlowski, Jan Rasconi, Serena Rivera, Sinziana Rougerie, Rodolphe Schweizer, Magali Trobajo, Rosa Vasselon, Valentin Vivien, Régis Weigand, Alexander Witkowski, Andrzej Zimmermann, Jonas Ekrem, Torbjørn |
| dc.subject.por.fl_str_mv |
Aquatic organisms DNA Barcode Metadata Quality Reference library Traceability Ciências Naturais::Ciências Biológicas Engenharia e Tecnologia::Engenharia do Ambiente |
| topic |
Aquatic organisms DNA Barcode Metadata Quality Reference library Traceability Ciências Naturais::Ciências Biológicas Engenharia e Tecnologia::Engenharia do Ambiente |
| description |
DNA barcoding and metabarcoding is increasingly used to effectively and precisely assess and monitor biodiversity in aquatic ecosystems. As these methods rely on data availability and quality of barcode reference libraries, it is important to develop and follow best practices to ensure optimal quality and traceability of the metadata associated with the reference barcodes used for identification. Sufficient metadata, as well as vouchers, corresponding to each reference barcode must be available to ensure reliable barcode library curation and, thereby, provide trustworthy baselines for downstream molecular species identification. This document (1) specifies the data and metadata required to ensure the relevance, the accessibility and traceability of DNA barcodes and (2) specifies the recommendations for DNA harvesting and for the storage of both voucher specimens/samples and barcode data |
| publishDate |
2021 |
| dc.date.none.fl_str_mv |
2021 2021-01-01T00:00:00Z |
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info:eu-repo/semantics/publishedVersion |
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info:eu-repo/semantics/article |
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article |
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publishedVersion |
| dc.identifier.uri.fl_str_mv |
http://hdl.handle.net/1822/72999 |
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http://hdl.handle.net/1822/72999 |
| dc.language.iso.fl_str_mv |
eng |
| language |
eng |
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Rimet, F., Aylagas, E., Borja, Á., Bouchez, A., et al.(2021). Metadata standards and practical guidelines for specimen and DNA curation when building barcode reference libraries for aquatic life. Metabarcoding and Metagenomics, 5 2534-9708 10.3897/mbmg.5.58056 https://mbmg.pensoft.net/article/58056/ |
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openAccess |
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application/pdf |
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Pensoft Publishers |
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Pensoft Publishers |
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