Geographical location and habitat predict variation in prokaryotic community composition of Suberites diversicolor

Detalhes bibliográficos
Autor(a) principal: Ferreira, Marina Rafaela Santos
Data de Publicação: 2020
Outros Autores: Cleary, Daniel Francis Richard, Coelho, Francisco José Riso Costa, Gomes, Newton Carlos Marcial, Huang, Yusheng M., Polónia, Ana Rita Moura, de Voogd, Nicole Joy
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10773/28167
Resumo: Purpose: Marine lakes are unique habitats that house diverse assemblages of benthic and planktonic organisms including endemic species. In this study, we aimed to assess to what extent geographical location (Berau versus Papua) and the degree of marine lake connectivity (relatively open versus closed) to the surrounding marine environment structures the prokaryotic community composition of the sponge species Suberites diversicolor. Methods: Sponge specimens were sampled in five marine lakes in Borneo and Papua and one open sea habitat in Taiwan. Result: Prokaryotic communities of S. diversicolor were dominated by members assigned to the Proteobacteria (particularly Alphaproteobacteria and Gammaproteobacteria) and Cyanobacteria, which together made up from 78 to 87% of sequences in all samples. The dominant operational taxonomic units (OTUs) in most samples, OTUs 1 and 3, were both assigned to the alphaproteobacterial order Rhodospirillales with OTU-1 dominant in the marine lakes of Berau and Papua and OTU-3 in Taiwan. OTU-3 was also largely absent from Papuan samples but present in all Berau samples. Compositionally, S. diversicolor samples clustered according to geographical location with the main axis of variation separating marine lake samples collected in Berau from those collected in Papua and the second axis of variation separating open sea samples collected in Taiwan from all marine lake samples. In addition, our results suggest that the degree of lake connectivity to the open sea also influences prokaryotic composition. Conclusion: Although previous studies have shown that sponge-associated microbial communities tend to be stable across different geographical and environmental gradients, in the present study, both geography and local environmental conditions were significant predictors of variation in prokaryotic community composition of S. diversicolor.
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spelling Geographical location and habitat predict variation in prokaryotic community composition of Suberites diversicolorAnchialine systemsCompositionIlluminaPoriferaIndonesiaTaiwanPurpose: Marine lakes are unique habitats that house diverse assemblages of benthic and planktonic organisms including endemic species. In this study, we aimed to assess to what extent geographical location (Berau versus Papua) and the degree of marine lake connectivity (relatively open versus closed) to the surrounding marine environment structures the prokaryotic community composition of the sponge species Suberites diversicolor. Methods: Sponge specimens were sampled in five marine lakes in Borneo and Papua and one open sea habitat in Taiwan. Result: Prokaryotic communities of S. diversicolor were dominated by members assigned to the Proteobacteria (particularly Alphaproteobacteria and Gammaproteobacteria) and Cyanobacteria, which together made up from 78 to 87% of sequences in all samples. The dominant operational taxonomic units (OTUs) in most samples, OTUs 1 and 3, were both assigned to the alphaproteobacterial order Rhodospirillales with OTU-1 dominant in the marine lakes of Berau and Papua and OTU-3 in Taiwan. OTU-3 was also largely absent from Papuan samples but present in all Berau samples. Compositionally, S. diversicolor samples clustered according to geographical location with the main axis of variation separating marine lake samples collected in Berau from those collected in Papua and the second axis of variation separating open sea samples collected in Taiwan from all marine lake samples. In addition, our results suggest that the degree of lake connectivity to the open sea also influences prokaryotic composition. Conclusion: Although previous studies have shown that sponge-associated microbial communities tend to be stable across different geographical and environmental gradients, in the present study, both geography and local environmental conditions were significant predictors of variation in prokaryotic community composition of S. diversicolor.Springer Nature2020-04-02T16:04:00Z2020-01-01T00:00:00Z2020info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10773/28167eng1590-426110.1186/s13213-020-01546-zFerreira, Marina Rafaela SantosCleary, Daniel Francis RichardCoelho, Francisco José Riso CostaGomes, Newton Carlos MarcialHuang, Yusheng M.Polónia, Ana Rita Mourade Voogd, Nicole Joyinfo:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2024-02-22T11:54:32Zoai:ria.ua.pt:10773/28167Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-20T03:00:47.528536Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Geographical location and habitat predict variation in prokaryotic community composition of Suberites diversicolor
title Geographical location and habitat predict variation in prokaryotic community composition of Suberites diversicolor
spellingShingle Geographical location and habitat predict variation in prokaryotic community composition of Suberites diversicolor
Ferreira, Marina Rafaela Santos
Anchialine systems
Composition
Illumina
Porifera
Indonesia
Taiwan
title_short Geographical location and habitat predict variation in prokaryotic community composition of Suberites diversicolor
title_full Geographical location and habitat predict variation in prokaryotic community composition of Suberites diversicolor
title_fullStr Geographical location and habitat predict variation in prokaryotic community composition of Suberites diversicolor
title_full_unstemmed Geographical location and habitat predict variation in prokaryotic community composition of Suberites diversicolor
title_sort Geographical location and habitat predict variation in prokaryotic community composition of Suberites diversicolor
author Ferreira, Marina Rafaela Santos
author_facet Ferreira, Marina Rafaela Santos
Cleary, Daniel Francis Richard
Coelho, Francisco José Riso Costa
Gomes, Newton Carlos Marcial
Huang, Yusheng M.
Polónia, Ana Rita Moura
de Voogd, Nicole Joy
author_role author
author2 Cleary, Daniel Francis Richard
Coelho, Francisco José Riso Costa
Gomes, Newton Carlos Marcial
Huang, Yusheng M.
Polónia, Ana Rita Moura
de Voogd, Nicole Joy
author2_role author
author
author
author
author
author
dc.contributor.author.fl_str_mv Ferreira, Marina Rafaela Santos
Cleary, Daniel Francis Richard
Coelho, Francisco José Riso Costa
Gomes, Newton Carlos Marcial
Huang, Yusheng M.
Polónia, Ana Rita Moura
de Voogd, Nicole Joy
dc.subject.por.fl_str_mv Anchialine systems
Composition
Illumina
Porifera
Indonesia
Taiwan
topic Anchialine systems
Composition
Illumina
Porifera
Indonesia
Taiwan
description Purpose: Marine lakes are unique habitats that house diverse assemblages of benthic and planktonic organisms including endemic species. In this study, we aimed to assess to what extent geographical location (Berau versus Papua) and the degree of marine lake connectivity (relatively open versus closed) to the surrounding marine environment structures the prokaryotic community composition of the sponge species Suberites diversicolor. Methods: Sponge specimens were sampled in five marine lakes in Borneo and Papua and one open sea habitat in Taiwan. Result: Prokaryotic communities of S. diversicolor were dominated by members assigned to the Proteobacteria (particularly Alphaproteobacteria and Gammaproteobacteria) and Cyanobacteria, which together made up from 78 to 87% of sequences in all samples. The dominant operational taxonomic units (OTUs) in most samples, OTUs 1 and 3, were both assigned to the alphaproteobacterial order Rhodospirillales with OTU-1 dominant in the marine lakes of Berau and Papua and OTU-3 in Taiwan. OTU-3 was also largely absent from Papuan samples but present in all Berau samples. Compositionally, S. diversicolor samples clustered according to geographical location with the main axis of variation separating marine lake samples collected in Berau from those collected in Papua and the second axis of variation separating open sea samples collected in Taiwan from all marine lake samples. In addition, our results suggest that the degree of lake connectivity to the open sea also influences prokaryotic composition. Conclusion: Although previous studies have shown that sponge-associated microbial communities tend to be stable across different geographical and environmental gradients, in the present study, both geography and local environmental conditions were significant predictors of variation in prokaryotic community composition of S. diversicolor.
publishDate 2020
dc.date.none.fl_str_mv 2020-04-02T16:04:00Z
2020-01-01T00:00:00Z
2020
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10773/28167
url http://hdl.handle.net/10773/28167
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 1590-4261
10.1186/s13213-020-01546-z
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Springer Nature
publisher.none.fl_str_mv Springer Nature
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
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instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron_str RCAAP
institution RCAAP
reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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