Geographical location and habitat predict variation in prokaryotic community composition of Suberites diversicolor
Autor(a) principal: | |
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Data de Publicação: | 2020 |
Outros Autores: | , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
Texto Completo: | http://hdl.handle.net/10773/28167 |
Resumo: | Purpose: Marine lakes are unique habitats that house diverse assemblages of benthic and planktonic organisms including endemic species. In this study, we aimed to assess to what extent geographical location (Berau versus Papua) and the degree of marine lake connectivity (relatively open versus closed) to the surrounding marine environment structures the prokaryotic community composition of the sponge species Suberites diversicolor. Methods: Sponge specimens were sampled in five marine lakes in Borneo and Papua and one open sea habitat in Taiwan. Result: Prokaryotic communities of S. diversicolor were dominated by members assigned to the Proteobacteria (particularly Alphaproteobacteria and Gammaproteobacteria) and Cyanobacteria, which together made up from 78 to 87% of sequences in all samples. The dominant operational taxonomic units (OTUs) in most samples, OTUs 1 and 3, were both assigned to the alphaproteobacterial order Rhodospirillales with OTU-1 dominant in the marine lakes of Berau and Papua and OTU-3 in Taiwan. OTU-3 was also largely absent from Papuan samples but present in all Berau samples. Compositionally, S. diversicolor samples clustered according to geographical location with the main axis of variation separating marine lake samples collected in Berau from those collected in Papua and the second axis of variation separating open sea samples collected in Taiwan from all marine lake samples. In addition, our results suggest that the degree of lake connectivity to the open sea also influences prokaryotic composition. Conclusion: Although previous studies have shown that sponge-associated microbial communities tend to be stable across different geographical and environmental gradients, in the present study, both geography and local environmental conditions were significant predictors of variation in prokaryotic community composition of S. diversicolor. |
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Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
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Geographical location and habitat predict variation in prokaryotic community composition of Suberites diversicolorAnchialine systemsCompositionIlluminaPoriferaIndonesiaTaiwanPurpose: Marine lakes are unique habitats that house diverse assemblages of benthic and planktonic organisms including endemic species. In this study, we aimed to assess to what extent geographical location (Berau versus Papua) and the degree of marine lake connectivity (relatively open versus closed) to the surrounding marine environment structures the prokaryotic community composition of the sponge species Suberites diversicolor. Methods: Sponge specimens were sampled in five marine lakes in Borneo and Papua and one open sea habitat in Taiwan. Result: Prokaryotic communities of S. diversicolor were dominated by members assigned to the Proteobacteria (particularly Alphaproteobacteria and Gammaproteobacteria) and Cyanobacteria, which together made up from 78 to 87% of sequences in all samples. The dominant operational taxonomic units (OTUs) in most samples, OTUs 1 and 3, were both assigned to the alphaproteobacterial order Rhodospirillales with OTU-1 dominant in the marine lakes of Berau and Papua and OTU-3 in Taiwan. OTU-3 was also largely absent from Papuan samples but present in all Berau samples. Compositionally, S. diversicolor samples clustered according to geographical location with the main axis of variation separating marine lake samples collected in Berau from those collected in Papua and the second axis of variation separating open sea samples collected in Taiwan from all marine lake samples. In addition, our results suggest that the degree of lake connectivity to the open sea also influences prokaryotic composition. Conclusion: Although previous studies have shown that sponge-associated microbial communities tend to be stable across different geographical and environmental gradients, in the present study, both geography and local environmental conditions were significant predictors of variation in prokaryotic community composition of S. diversicolor.Springer Nature2020-04-02T16:04:00Z2020-01-01T00:00:00Z2020info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10773/28167eng1590-426110.1186/s13213-020-01546-zFerreira, Marina Rafaela SantosCleary, Daniel Francis RichardCoelho, Francisco José Riso CostaGomes, Newton Carlos MarcialHuang, Yusheng M.Polónia, Ana Rita Mourade Voogd, Nicole Joyinfo:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2024-02-22T11:54:32Zoai:ria.ua.pt:10773/28167Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-20T03:00:47.528536Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse |
dc.title.none.fl_str_mv |
Geographical location and habitat predict variation in prokaryotic community composition of Suberites diversicolor |
title |
Geographical location and habitat predict variation in prokaryotic community composition of Suberites diversicolor |
spellingShingle |
Geographical location and habitat predict variation in prokaryotic community composition of Suberites diversicolor Ferreira, Marina Rafaela Santos Anchialine systems Composition Illumina Porifera Indonesia Taiwan |
title_short |
Geographical location and habitat predict variation in prokaryotic community composition of Suberites diversicolor |
title_full |
Geographical location and habitat predict variation in prokaryotic community composition of Suberites diversicolor |
title_fullStr |
Geographical location and habitat predict variation in prokaryotic community composition of Suberites diversicolor |
title_full_unstemmed |
Geographical location and habitat predict variation in prokaryotic community composition of Suberites diversicolor |
title_sort |
Geographical location and habitat predict variation in prokaryotic community composition of Suberites diversicolor |
author |
Ferreira, Marina Rafaela Santos |
author_facet |
Ferreira, Marina Rafaela Santos Cleary, Daniel Francis Richard Coelho, Francisco José Riso Costa Gomes, Newton Carlos Marcial Huang, Yusheng M. Polónia, Ana Rita Moura de Voogd, Nicole Joy |
author_role |
author |
author2 |
Cleary, Daniel Francis Richard Coelho, Francisco José Riso Costa Gomes, Newton Carlos Marcial Huang, Yusheng M. Polónia, Ana Rita Moura de Voogd, Nicole Joy |
author2_role |
author author author author author author |
dc.contributor.author.fl_str_mv |
Ferreira, Marina Rafaela Santos Cleary, Daniel Francis Richard Coelho, Francisco José Riso Costa Gomes, Newton Carlos Marcial Huang, Yusheng M. Polónia, Ana Rita Moura de Voogd, Nicole Joy |
dc.subject.por.fl_str_mv |
Anchialine systems Composition Illumina Porifera Indonesia Taiwan |
topic |
Anchialine systems Composition Illumina Porifera Indonesia Taiwan |
description |
Purpose: Marine lakes are unique habitats that house diverse assemblages of benthic and planktonic organisms including endemic species. In this study, we aimed to assess to what extent geographical location (Berau versus Papua) and the degree of marine lake connectivity (relatively open versus closed) to the surrounding marine environment structures the prokaryotic community composition of the sponge species Suberites diversicolor. Methods: Sponge specimens were sampled in five marine lakes in Borneo and Papua and one open sea habitat in Taiwan. Result: Prokaryotic communities of S. diversicolor were dominated by members assigned to the Proteobacteria (particularly Alphaproteobacteria and Gammaproteobacteria) and Cyanobacteria, which together made up from 78 to 87% of sequences in all samples. The dominant operational taxonomic units (OTUs) in most samples, OTUs 1 and 3, were both assigned to the alphaproteobacterial order Rhodospirillales with OTU-1 dominant in the marine lakes of Berau and Papua and OTU-3 in Taiwan. OTU-3 was also largely absent from Papuan samples but present in all Berau samples. Compositionally, S. diversicolor samples clustered according to geographical location with the main axis of variation separating marine lake samples collected in Berau from those collected in Papua and the second axis of variation separating open sea samples collected in Taiwan from all marine lake samples. In addition, our results suggest that the degree of lake connectivity to the open sea also influences prokaryotic composition. Conclusion: Although previous studies have shown that sponge-associated microbial communities tend to be stable across different geographical and environmental gradients, in the present study, both geography and local environmental conditions were significant predictors of variation in prokaryotic community composition of S. diversicolor. |
publishDate |
2020 |
dc.date.none.fl_str_mv |
2020-04-02T16:04:00Z 2020-01-01T00:00:00Z 2020 |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://hdl.handle.net/10773/28167 |
url |
http://hdl.handle.net/10773/28167 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
1590-4261 10.1186/s13213-020-01546-z |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.publisher.none.fl_str_mv |
Springer Nature |
publisher.none.fl_str_mv |
Springer Nature |
dc.source.none.fl_str_mv |
reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação instacron:RCAAP |
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Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
instacron_str |
RCAAP |
institution |
RCAAP |
reponame_str |
Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
collection |
Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
repository.name.fl_str_mv |
Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
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1799137663794544640 |