Modulation of the berry skin transcriptome of cv. tempranillo induced by water stress levels

Detalhes bibliográficos
Autor(a) principal: Carvalho, Luisa C
Data de Publicação: 2023
Outros Autores: Ramos, Miguel J. N., Faísca-Silva, David, Marreiros, Pedro, Fernandes, João C., Egipto, Ricardo, Lopes, Carlos M., Amâncio, Sara
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10400.5/30412
Resumo: Climate change in the Mediterranean area is making summers warmer and dryer. Grapevine (Vitis vinifera L.) is mostly important for wine production in Mediterranean countries, and the variety Tempranillo is one of the most cultivated in Spain and Portugal. Drought decreases yield and quality and causes important economic losses. As full irrigation has negative effects on quality and water is scarce in this region, deficit irrigation is often applied. In this research, we studied the effects of two deficit irrigation treatments, Sustained Deficit Irrigation (SDI) and Regulated Deficit Irrigation (RDI), on the transcriptome of grape berries at full maturation, through RNAseq. The expression of differentially regulated genes (DEGs) was also monitored through RT-qPCR along berry development. Most transcripts were regulated by water stress, with a similar distribution of up- and down-regulated transcripts within functional categories (FC). Primary metabolism was the more severely affected FC under water stress, followed by signaling and transport. Almost all DEGs monitored were significantly up-regulated by severe water stress at veraison. The modulation of an auxin response repression factor, AUX22D, by water stress indicates a role of this gene in the response to drought. Further, the expression of WRKY40, a TF that regulates anthocyanin biosynthesis, may be responsible for changes in grape quality under severe water stress.
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spelling Modulation of the berry skin transcriptome of cv. tempranillo induced by water stress levelsberry skindeficit irrigation strategiesRNA-SeqsHSPethyleneauxinsClimate change in the Mediterranean area is making summers warmer and dryer. Grapevine (Vitis vinifera L.) is mostly important for wine production in Mediterranean countries, and the variety Tempranillo is one of the most cultivated in Spain and Portugal. Drought decreases yield and quality and causes important economic losses. As full irrigation has negative effects on quality and water is scarce in this region, deficit irrigation is often applied. In this research, we studied the effects of two deficit irrigation treatments, Sustained Deficit Irrigation (SDI) and Regulated Deficit Irrigation (RDI), on the transcriptome of grape berries at full maturation, through RNAseq. The expression of differentially regulated genes (DEGs) was also monitored through RT-qPCR along berry development. Most transcripts were regulated by water stress, with a similar distribution of up- and down-regulated transcripts within functional categories (FC). Primary metabolism was the more severely affected FC under water stress, followed by signaling and transport. Almost all DEGs monitored were significantly up-regulated by severe water stress at veraison. The modulation of an auxin response repression factor, AUX22D, by water stress indicates a role of this gene in the response to drought. Further, the expression of WRKY40, a TF that regulates anthocyanin biosynthesis, may be responsible for changes in grape quality under severe water stress.MDPIRepositório da Universidade de LisboaCarvalho, Luisa CRamos, Miguel J. N.Faísca-Silva, DavidMarreiros, PedroFernandes, João C.Egipto, RicardoLopes, Carlos M.Amâncio, Sara2024-03-15T10:11:51Z2023-052023-05-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10400.5/30412engCarvalho, L.C.; Ramos, M.J.N.; Faísca-Silva, D.; Marreiros, P.; Fernandes, J.C.; Egipto, R.; Lopes, C.M.; Amâncio, S. Modulation of the berry skin transcriptome of cv. tempranillo induced by water stress levels. Plants 2023, 12, 1778.10.3390/plants12091778info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2024-03-17T01:34:51Zoai:www.repository.utl.pt:10400.5/30412Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-20T04:01:49.680496Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Modulation of the berry skin transcriptome of cv. tempranillo induced by water stress levels
title Modulation of the berry skin transcriptome of cv. tempranillo induced by water stress levels
spellingShingle Modulation of the berry skin transcriptome of cv. tempranillo induced by water stress levels
Carvalho, Luisa C
berry skin
deficit irrigation strategies
RNA-Seq
sHSP
ethylene
auxins
title_short Modulation of the berry skin transcriptome of cv. tempranillo induced by water stress levels
title_full Modulation of the berry skin transcriptome of cv. tempranillo induced by water stress levels
title_fullStr Modulation of the berry skin transcriptome of cv. tempranillo induced by water stress levels
title_full_unstemmed Modulation of the berry skin transcriptome of cv. tempranillo induced by water stress levels
title_sort Modulation of the berry skin transcriptome of cv. tempranillo induced by water stress levels
author Carvalho, Luisa C
author_facet Carvalho, Luisa C
Ramos, Miguel J. N.
Faísca-Silva, David
Marreiros, Pedro
Fernandes, João C.
Egipto, Ricardo
Lopes, Carlos M.
Amâncio, Sara
author_role author
author2 Ramos, Miguel J. N.
Faísca-Silva, David
Marreiros, Pedro
Fernandes, João C.
Egipto, Ricardo
Lopes, Carlos M.
Amâncio, Sara
author2_role author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Repositório da Universidade de Lisboa
dc.contributor.author.fl_str_mv Carvalho, Luisa C
Ramos, Miguel J. N.
Faísca-Silva, David
Marreiros, Pedro
Fernandes, João C.
Egipto, Ricardo
Lopes, Carlos M.
Amâncio, Sara
dc.subject.por.fl_str_mv berry skin
deficit irrigation strategies
RNA-Seq
sHSP
ethylene
auxins
topic berry skin
deficit irrigation strategies
RNA-Seq
sHSP
ethylene
auxins
description Climate change in the Mediterranean area is making summers warmer and dryer. Grapevine (Vitis vinifera L.) is mostly important for wine production in Mediterranean countries, and the variety Tempranillo is one of the most cultivated in Spain and Portugal. Drought decreases yield and quality and causes important economic losses. As full irrigation has negative effects on quality and water is scarce in this region, deficit irrigation is often applied. In this research, we studied the effects of two deficit irrigation treatments, Sustained Deficit Irrigation (SDI) and Regulated Deficit Irrigation (RDI), on the transcriptome of grape berries at full maturation, through RNAseq. The expression of differentially regulated genes (DEGs) was also monitored through RT-qPCR along berry development. Most transcripts were regulated by water stress, with a similar distribution of up- and down-regulated transcripts within functional categories (FC). Primary metabolism was the more severely affected FC under water stress, followed by signaling and transport. Almost all DEGs monitored were significantly up-regulated by severe water stress at veraison. The modulation of an auxin response repression factor, AUX22D, by water stress indicates a role of this gene in the response to drought. Further, the expression of WRKY40, a TF that regulates anthocyanin biosynthesis, may be responsible for changes in grape quality under severe water stress.
publishDate 2023
dc.date.none.fl_str_mv 2023-05
2023-05-01T00:00:00Z
2024-03-15T10:11:51Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10400.5/30412
url http://hdl.handle.net/10400.5/30412
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Carvalho, L.C.; Ramos, M.J.N.; Faísca-Silva, D.; Marreiros, P.; Fernandes, J.C.; Egipto, R.; Lopes, C.M.; Amâncio, S. Modulation of the berry skin transcriptome of cv. tempranillo induced by water stress levels. Plants 2023, 12, 1778.
10.3390/plants12091778
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv MDPI
publisher.none.fl_str_mv MDPI
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron:RCAAP
instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron_str RCAAP
institution RCAAP
reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
repository.mail.fl_str_mv
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