Identification of molecules and pathways regulating mistranslation in Candida albicans

Detalhes bibliográficos
Autor(a) principal: Oliveira, Carla Sofia Brites de
Data de Publicação: 2015
Tipo de documento: Dissertação
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10773/15508
Resumo: Candida albicans is the major fungal pathogen in humans, causing diseases ranging from mild skin infections to severe systemic infections in immunocompromised individuals. The pathogenic nature of this organism is mostly due to its capacity to proliferate in numerous body sites and to its ability to adapt to drastic changes in the environment. Candida albicans exhibit a unique translational system, decoding the leucine-CUG codon ambiguously as leucine (3% of codons) and serine (97%) using a hybrid serine tRNA (tRNACAGSer). This tRNACAGSer is aminoacylated by two aminoacyl tRNA synthetases (aaRSs): leucyl-tRNA synthetase (LeuRS) and seryl-tRNA synthetase (SerRS). Previous studies showed that exposure of C. albicans to macrophages, oxidative, pH stress and antifungals increases Leu misincorporation levels from 3% to 15%, suggesting that C. albicans has the ability to regulate mistranslation levels in response to host defenses, antifungals and environmental stresses. Therefore, the hypothesis tested in this work is that Leu and Ser misincorporation at CUG codons is dependent upon competition between the LeuRS and SerRS for the tRNACAGSer. To test this hypothesis, levels of the SerRS and LeuRS were indirectly quantified under different physiological conditions, using a fluorescent reporter system that measures the activity of the respective promoters. Results suggest that an increase in Leu misincorporation at CUG codons is associated with an increase in LeuRS expression, with levels of SerRS being maintained. In the second part of the work, the objective was to identify putative regulators of SerRS and LeuRS expression. To accomplish this goal, C. albicans strains from a transcription factor knock-out collection were transformed with the fluorescent reporter system and expression of both aaRSs was quantified. Alterations in the LeuRS/SerRS expression of mutant strains compared to wild type strain allowed the identification of 5 transcription factors as possible regulators of expression of LeuRS and SerRS: ASH1, HAP2, HAP3, RTG3 and STB5. Globally, this work provides the first step to elucidate the molecular mechanism of regulation of mistranslation in C. albicans.
id RCAP_b21526e10dcd7b8b7698561135de1520
oai_identifier_str oai:ria.ua.pt:10773/15508
network_acronym_str RCAP
network_name_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository_id_str 7160
spelling Identification of molecules and pathways regulating mistranslation in Candida albicansBiologia molecular e celularTradução genéticaInfecçõesCandida albicansCandida albicans is the major fungal pathogen in humans, causing diseases ranging from mild skin infections to severe systemic infections in immunocompromised individuals. The pathogenic nature of this organism is mostly due to its capacity to proliferate in numerous body sites and to its ability to adapt to drastic changes in the environment. Candida albicans exhibit a unique translational system, decoding the leucine-CUG codon ambiguously as leucine (3% of codons) and serine (97%) using a hybrid serine tRNA (tRNACAGSer). This tRNACAGSer is aminoacylated by two aminoacyl tRNA synthetases (aaRSs): leucyl-tRNA synthetase (LeuRS) and seryl-tRNA synthetase (SerRS). Previous studies showed that exposure of C. albicans to macrophages, oxidative, pH stress and antifungals increases Leu misincorporation levels from 3% to 15%, suggesting that C. albicans has the ability to regulate mistranslation levels in response to host defenses, antifungals and environmental stresses. Therefore, the hypothesis tested in this work is that Leu and Ser misincorporation at CUG codons is dependent upon competition between the LeuRS and SerRS for the tRNACAGSer. To test this hypothesis, levels of the SerRS and LeuRS were indirectly quantified under different physiological conditions, using a fluorescent reporter system that measures the activity of the respective promoters. Results suggest that an increase in Leu misincorporation at CUG codons is associated with an increase in LeuRS expression, with levels of SerRS being maintained. In the second part of the work, the objective was to identify putative regulators of SerRS and LeuRS expression. To accomplish this goal, C. albicans strains from a transcription factor knock-out collection were transformed with the fluorescent reporter system and expression of both aaRSs was quantified. Alterations in the LeuRS/SerRS expression of mutant strains compared to wild type strain allowed the identification of 5 transcription factors as possible regulators of expression of LeuRS and SerRS: ASH1, HAP2, HAP3, RTG3 and STB5. Globally, this work provides the first step to elucidate the molecular mechanism of regulation of mistranslation in C. albicans.Candida albicans é o fungo patogénico mais predominante em humanos, causando doenças que podem variar entre ligeiras infeções de pele a infeções sistémicas severas em pacientes imunodeprimidos. A natureza patogénica deste organismo deve-se principalmente à capacidade de proliferação em vários locais do corpo humano e à sua capacidade de adaptação a mudanças drásticas no seu ambiente. Candida albicans exibe um sistema de tradução único, descodificando o codão de leucina CUG ambiguamente como leucina (3% dos codões) e serina (97%). Para tal usa um tRNA híbrido de serina (tRNACAGSer) que é aminoacilado por duas aminoaciltRNA sintetases (aaRSs): leucil-tRNA sintetase (LeuRS) e seril-tRNA sintetase (SerRS). Trabalhos anteriores mostraram que a exposição de C. albicans a macrófagos, stress oxidativo, pH e antifúngicos aumenta os níveis de ambiguidade de 3% a 15%, sugerindo que C. albicans tem a capacidade de regular os níveis de erros de tradução em resposta às defesas do hospedeiro, antifúngicos e stress ambiental. Desta forma, a hipótese testada neste trabalho é a de que a variável incorporação de Leu e Ser nos codões CUG é dependente da competição entre LeuRS e SerRS pelo tRNACAGSer. Para testar esta hipótese, os níveis de SerRS e LeuRS foram indiretamente quantificados em diferentes condições fisiológicas, usando um sistema repórter fluorescente que determina a atividade dos respetivos promotores. Os resultados sugerem que o aumento de incorporação de leucina em codões CUG está associado a um aumento da expressão de LeuRS, sendo mantidos os níveis de SerRS. Na segunda parte do trabalho, pretendeu-se identificar possíveis reguladores da expressão da SerRS e LeuRS. Para tal, uma coleção de estirpes de C. albicans com fatores de transcrição deletados foram transformadas com o sistema repórter fluorescente, de forma a quantificar a expressão das duas aaRSs. Alterações no rácio LeuRS/SerRS em estirpes deletadas relativamente à estirpe não deletada permitiram identificar 5 fatores de transcrição como possíveis reguladores da expressão destas duas aaRSs: ASH1, HAP2, HAP3, RTG3 e STB5. Globalmente, este trabalho constitui o primeiro passo para elucidar o mecanismo molecular de regulação de erros de tradução em C. albicansUniversidade de Aveiro2018-07-20T14:00:53Z2015-12-18T00:00:00Z2015-12-182017-12-11T16:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/masterThesisapplication/pdfhttp://hdl.handle.net/10773/15508TID:201568497engOliveira, Carla Sofia Brites deinfo:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2024-02-22T11:28:43Zoai:ria.ua.pt:10773/15508Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-20T02:50:52.887710Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Identification of molecules and pathways regulating mistranslation in Candida albicans
title Identification of molecules and pathways regulating mistranslation in Candida albicans
spellingShingle Identification of molecules and pathways regulating mistranslation in Candida albicans
Oliveira, Carla Sofia Brites de
Biologia molecular e celular
Tradução genética
Infecções
Candida albicans
title_short Identification of molecules and pathways regulating mistranslation in Candida albicans
title_full Identification of molecules and pathways regulating mistranslation in Candida albicans
title_fullStr Identification of molecules and pathways regulating mistranslation in Candida albicans
title_full_unstemmed Identification of molecules and pathways regulating mistranslation in Candida albicans
title_sort Identification of molecules and pathways regulating mistranslation in Candida albicans
author Oliveira, Carla Sofia Brites de
author_facet Oliveira, Carla Sofia Brites de
author_role author
dc.contributor.author.fl_str_mv Oliveira, Carla Sofia Brites de
dc.subject.por.fl_str_mv Biologia molecular e celular
Tradução genética
Infecções
Candida albicans
topic Biologia molecular e celular
Tradução genética
Infecções
Candida albicans
description Candida albicans is the major fungal pathogen in humans, causing diseases ranging from mild skin infections to severe systemic infections in immunocompromised individuals. The pathogenic nature of this organism is mostly due to its capacity to proliferate in numerous body sites and to its ability to adapt to drastic changes in the environment. Candida albicans exhibit a unique translational system, decoding the leucine-CUG codon ambiguously as leucine (3% of codons) and serine (97%) using a hybrid serine tRNA (tRNACAGSer). This tRNACAGSer is aminoacylated by two aminoacyl tRNA synthetases (aaRSs): leucyl-tRNA synthetase (LeuRS) and seryl-tRNA synthetase (SerRS). Previous studies showed that exposure of C. albicans to macrophages, oxidative, pH stress and antifungals increases Leu misincorporation levels from 3% to 15%, suggesting that C. albicans has the ability to regulate mistranslation levels in response to host defenses, antifungals and environmental stresses. Therefore, the hypothesis tested in this work is that Leu and Ser misincorporation at CUG codons is dependent upon competition between the LeuRS and SerRS for the tRNACAGSer. To test this hypothesis, levels of the SerRS and LeuRS were indirectly quantified under different physiological conditions, using a fluorescent reporter system that measures the activity of the respective promoters. Results suggest that an increase in Leu misincorporation at CUG codons is associated with an increase in LeuRS expression, with levels of SerRS being maintained. In the second part of the work, the objective was to identify putative regulators of SerRS and LeuRS expression. To accomplish this goal, C. albicans strains from a transcription factor knock-out collection were transformed with the fluorescent reporter system and expression of both aaRSs was quantified. Alterations in the LeuRS/SerRS expression of mutant strains compared to wild type strain allowed the identification of 5 transcription factors as possible regulators of expression of LeuRS and SerRS: ASH1, HAP2, HAP3, RTG3 and STB5. Globally, this work provides the first step to elucidate the molecular mechanism of regulation of mistranslation in C. albicans.
publishDate 2015
dc.date.none.fl_str_mv 2015-12-18T00:00:00Z
2015-12-18
2017-12-11T16:00:00Z
2018-07-20T14:00:53Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/masterThesis
format masterThesis
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10773/15508
TID:201568497
url http://hdl.handle.net/10773/15508
identifier_str_mv TID:201568497
dc.language.iso.fl_str_mv eng
language eng
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Universidade de Aveiro
publisher.none.fl_str_mv Universidade de Aveiro
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron:RCAAP
instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron_str RCAAP
institution RCAAP
reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
repository.mail.fl_str_mv
_version_ 1799137558156804096