On a Non-Discrete Concept of Prokaryotic Species

Detalhes bibliográficos
Autor(a) principal: Gonzalez, Juan M.
Data de Publicação: 2020
Outros Autores: Puerta-Fernández, Elena, Santana, Margarida, Rekadwad, Bhagwan
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10451/49478
Resumo: The taxonomic concept of species has received continuous attention. A microbial species as a discrete box contains a limited number of highly similar microorganisms assigned to that taxon, following a polyphasic approach. In the 21st Century, with the advancements of sequencing technologies and genomics, the existence of a huge prokaryotic diversity has become well known. At present, the prokaryotic species might no longer have to be understood as discrete values (such as 1 or 2, by homology to Natural numbers); rather, it is expected that some microorganisms could be potentially distributed (according to their genome features and phenotypes) in between others (such as decimal numbers between 1 and 2; real numbers). We propose a continuous species concept for microorganisms, which adapts to the current knowledge on the huge diversity, variability and heterogeneity existing among bacteria and archaea. Likely, this concept could be extended to eukaryotic microorganisms. The continuous species concept considers a species to be delimited by the distance between a range of variable features following a Gaussian-type distribution around a reference organism (i.e., its type strain). Some potential pros and cons of a continuous concept are commented on, offering novel perspectives on our understanding of the highly diversified prokaryotic world, thus promoting discussion and further investigation in the field.
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spelling On a Non-Discrete Concept of Prokaryotic SpeciesThe taxonomic concept of species has received continuous attention. A microbial species as a discrete box contains a limited number of highly similar microorganisms assigned to that taxon, following a polyphasic approach. In the 21st Century, with the advancements of sequencing technologies and genomics, the existence of a huge prokaryotic diversity has become well known. At present, the prokaryotic species might no longer have to be understood as discrete values (such as 1 or 2, by homology to Natural numbers); rather, it is expected that some microorganisms could be potentially distributed (according to their genome features and phenotypes) in between others (such as decimal numbers between 1 and 2; real numbers). We propose a continuous species concept for microorganisms, which adapts to the current knowledge on the huge diversity, variability and heterogeneity existing among bacteria and archaea. Likely, this concept could be extended to eukaryotic microorganisms. The continuous species concept considers a species to be delimited by the distance between a range of variable features following a Gaussian-type distribution around a reference organism (i.e., its type strain). Some potential pros and cons of a continuous concept are commented on, offering novel perspectives on our understanding of the highly diversified prokaryotic world, thus promoting discussion and further investigation in the field.MDPIRepositório da Universidade de LisboaGonzalez, Juan M.Puerta-Fernández, ElenaSantana, MargaridaRekadwad, Bhagwan2021-09-08T18:24:45Z2020-112020-11-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10451/49478engGonzalez, J.M.; Puerta-Fernández, E.; Santana, M.M.; Rekadwad, B. On a Non-Discrete Concept of Prokaryotic Species. Microorganisms 2020, 8, 1723. https://doi.org/10.3390/microorganisms811172310.3390/microorganisms8111723info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-11-08T16:53:03Zoai:repositorio.ul.pt:10451/49478Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T22:00:59.553332Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv On a Non-Discrete Concept of Prokaryotic Species
title On a Non-Discrete Concept of Prokaryotic Species
spellingShingle On a Non-Discrete Concept of Prokaryotic Species
Gonzalez, Juan M.
title_short On a Non-Discrete Concept of Prokaryotic Species
title_full On a Non-Discrete Concept of Prokaryotic Species
title_fullStr On a Non-Discrete Concept of Prokaryotic Species
title_full_unstemmed On a Non-Discrete Concept of Prokaryotic Species
title_sort On a Non-Discrete Concept of Prokaryotic Species
author Gonzalez, Juan M.
author_facet Gonzalez, Juan M.
Puerta-Fernández, Elena
Santana, Margarida
Rekadwad, Bhagwan
author_role author
author2 Puerta-Fernández, Elena
Santana, Margarida
Rekadwad, Bhagwan
author2_role author
author
author
dc.contributor.none.fl_str_mv Repositório da Universidade de Lisboa
dc.contributor.author.fl_str_mv Gonzalez, Juan M.
Puerta-Fernández, Elena
Santana, Margarida
Rekadwad, Bhagwan
description The taxonomic concept of species has received continuous attention. A microbial species as a discrete box contains a limited number of highly similar microorganisms assigned to that taxon, following a polyphasic approach. In the 21st Century, with the advancements of sequencing technologies and genomics, the existence of a huge prokaryotic diversity has become well known. At present, the prokaryotic species might no longer have to be understood as discrete values (such as 1 or 2, by homology to Natural numbers); rather, it is expected that some microorganisms could be potentially distributed (according to their genome features and phenotypes) in between others (such as decimal numbers between 1 and 2; real numbers). We propose a continuous species concept for microorganisms, which adapts to the current knowledge on the huge diversity, variability and heterogeneity existing among bacteria and archaea. Likely, this concept could be extended to eukaryotic microorganisms. The continuous species concept considers a species to be delimited by the distance between a range of variable features following a Gaussian-type distribution around a reference organism (i.e., its type strain). Some potential pros and cons of a continuous concept are commented on, offering novel perspectives on our understanding of the highly diversified prokaryotic world, thus promoting discussion and further investigation in the field.
publishDate 2020
dc.date.none.fl_str_mv 2020-11
2020-11-01T00:00:00Z
2021-09-08T18:24:45Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
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status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10451/49478
url http://hdl.handle.net/10451/49478
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Gonzalez, J.M.; Puerta-Fernández, E.; Santana, M.M.; Rekadwad, B. On a Non-Discrete Concept of Prokaryotic Species. Microorganisms 2020, 8, 1723. https://doi.org/10.3390/microorganisms8111723
10.3390/microorganisms8111723
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
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