Accuracy of oil palm root length measuring methods

Detalhes bibliográficos
Autor(a) principal: GLORIA, GERSON CARLOS PINTO
Data de Publicação: 2020
Outros Autores: Amador, Juciene, Vasconcelos, Steel
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: https://doi.org/10.19084/rca.18167
Resumo: Length is an important variable to describe root architecture and growth, but root length (RL) measurement is extremely laborious and time-consuming. Image analysis methods can provide reliable and fast RL estimates; such tools have not been applied for oil palm, a globally relevant commodity. We tested two image analysis softwares (Safira and ImageJ) and the modified line-intersect method to estimate oil palm RL. We considered the manual measurement of RL as reference to infer about the accuracy of the image analysis and line-intersect methods. We sampled roots in an 10-yr-old oil palm plantation in eastern Amazon. We used the estimates from the image analysis to calculate a correction factor that was further applied to improve the RL estimates. We applied the Paired sample t-test (p<0.05) to separately test the original and corrected estimates of each method in relation to the reference. The original RL estimates of the image analysis and line-intersect showed limited accuracy. The correction factors improved the estimates of RL for ImageJ, but not for Safira (except for roots within the 0.20-0.99 mm diameter range). We conclude that the ImageJ software is sufficiently accurate to estimate oil palm root length when specific root diameter correction factors are applied.
id RCAP_b30e0b048008cd997e89f14d692fa357
oai_identifier_str oai:ojs.revistas.rcaap.pt:article/18167
network_acronym_str RCAP
network_name_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository_id_str 7160
spelling Accuracy of oil palm root length measuring methodsGeralLength is an important variable to describe root architecture and growth, but root length (RL) measurement is extremely laborious and time-consuming. Image analysis methods can provide reliable and fast RL estimates; such tools have not been applied for oil palm, a globally relevant commodity. We tested two image analysis softwares (Safira and ImageJ) and the modified line-intersect method to estimate oil palm RL. We considered the manual measurement of RL as reference to infer about the accuracy of the image analysis and line-intersect methods. We sampled roots in an 10-yr-old oil palm plantation in eastern Amazon. We used the estimates from the image analysis to calculate a correction factor that was further applied to improve the RL estimates. We applied the Paired sample t-test (p<0.05) to separately test the original and corrected estimates of each method in relation to the reference. The original RL estimates of the image analysis and line-intersect showed limited accuracy. The correction factors improved the estimates of RL for ImageJ, but not for Safira (except for roots within the 0.20-0.99 mm diameter range). We conclude that the ImageJ software is sufficiently accurate to estimate oil palm root length when specific root diameter correction factors are applied.Sociedade de Ciências Agrárias de Portugal2020-05-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttps://doi.org/10.19084/rca.18167eng2183-041X0871-018XGLORIA, GERSON CARLOS PINTOAmador, JucieneVasconcelos, Steelinfo:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2022-09-06T09:25:18Zoai:ojs.revistas.rcaap.pt:article/18167Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T15:31:20.616135Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Accuracy of oil palm root length measuring methods
title Accuracy of oil palm root length measuring methods
spellingShingle Accuracy of oil palm root length measuring methods
GLORIA, GERSON CARLOS PINTO
Geral
title_short Accuracy of oil palm root length measuring methods
title_full Accuracy of oil palm root length measuring methods
title_fullStr Accuracy of oil palm root length measuring methods
title_full_unstemmed Accuracy of oil palm root length measuring methods
title_sort Accuracy of oil palm root length measuring methods
author GLORIA, GERSON CARLOS PINTO
author_facet GLORIA, GERSON CARLOS PINTO
Amador, Juciene
Vasconcelos, Steel
author_role author
author2 Amador, Juciene
Vasconcelos, Steel
author2_role author
author
dc.contributor.author.fl_str_mv GLORIA, GERSON CARLOS PINTO
Amador, Juciene
Vasconcelos, Steel
dc.subject.por.fl_str_mv Geral
topic Geral
description Length is an important variable to describe root architecture and growth, but root length (RL) measurement is extremely laborious and time-consuming. Image analysis methods can provide reliable and fast RL estimates; such tools have not been applied for oil palm, a globally relevant commodity. We tested two image analysis softwares (Safira and ImageJ) and the modified line-intersect method to estimate oil palm RL. We considered the manual measurement of RL as reference to infer about the accuracy of the image analysis and line-intersect methods. We sampled roots in an 10-yr-old oil palm plantation in eastern Amazon. We used the estimates from the image analysis to calculate a correction factor that was further applied to improve the RL estimates. We applied the Paired sample t-test (p<0.05) to separately test the original and corrected estimates of each method in relation to the reference. The original RL estimates of the image analysis and line-intersect showed limited accuracy. The correction factors improved the estimates of RL for ImageJ, but not for Safira (except for roots within the 0.20-0.99 mm diameter range). We conclude that the ImageJ software is sufficiently accurate to estimate oil palm root length when specific root diameter correction factors are applied.
publishDate 2020
dc.date.none.fl_str_mv 2020-05-01T00:00:00Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://doi.org/10.19084/rca.18167
url https://doi.org/10.19084/rca.18167
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 2183-041X
0871-018X
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv Sociedade de Ciências Agrárias de Portugal
publisher.none.fl_str_mv Sociedade de Ciências Agrárias de Portugal
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron:RCAAP
instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron_str RCAAP
institution RCAAP
reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
repository.mail.fl_str_mv
_version_ 1799130178565177344