Taxonomic annotation of public fungal ITS sequences from the built environment - A report from an April 10-11, 2017 workshop (Aberdeen, UK)
| Autor(a) principal: | |
|---|---|
| Data de Publicação: | 2018 |
| Outros Autores: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
| Tipo de documento: | Artigo |
| Idioma: | eng |
| Título da fonte: | Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
| Texto Completo: | https://doi.org/10.3897/mycokeys.28.20887 |
Resumo: | The UNITE database community gratefully acknowledges support from the Alfred P. Sloan Foundation. HN and CW gratefully acknowledges financial support from Stiftelsen Olle Engkvist Byggmastare, Stiftelsen Lars Hiertas Minne, Kapten Carl Stenholms Donationsfond, and Birgit och Birger Walhstroms Minnesfond. CW gratefully acknowledges a Marie Sklodowska-Curie post doctoral grant from the ERC. |
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Taxonomic annotation of public fungal ITS sequences from the built environment - A report from an April 10-11, 2017 workshop (Aberdeen, UK)Built environmentFungiIndoor mycobiomeMetadataMolecular identificationOpen dataSequence annotationSystematicsTaxonomyEcology, Evolution, Behavior and SystematicsSDG 3 - Good Health and Well-beingThe UNITE database community gratefully acknowledges support from the Alfred P. Sloan Foundation. HN and CW gratefully acknowledges financial support from Stiftelsen Olle Engkvist Byggmastare, Stiftelsen Lars Hiertas Minne, Kapten Carl Stenholms Donationsfond, and Birgit och Birger Walhstroms Minnesfond. CW gratefully acknowledges a Marie Sklodowska-Curie post doctoral grant from the ERC.Recent DNA-based studies have shown that the built environment is surprisingly rich in fungi. These indoor fungi - whether transient visitors or more persistent residents - may hold clues to the rising levels of human allergies and other medical and building-related health problems observed globally. The taxonomic identity of these fungi is crucial in such pursuits. Molecular identification of the built mycobiome is no trivial undertaking, however, given the large number of unidentified, misidentified, and technically compromised fungal sequences in public sequence databases. In addition, the sequence metadata required to make informed taxonomic decisions - such as country and host/substrate of collection - are often lacking even from reference and ex-type sequences. Here we report on a taxonomic annotation workshop (April 10-11, 2017) organized at the James Hutton Institute/University of Aberdeen (UK) to facilitate reproducible studies of the built mycobiome. The 32 participants went through public fungal ITS barcode sequences related to the built mycobiome for taxonomic and nomenclatural correctness, technical quality, and metadata availability. A total of 19,508 changes - including 4,783 name changes, 14,121 metadata annotations, and the removal of 99 technically compromised sequences - were implemented in the UNITE database for molecular identification of fungi (https://unite.ut.ee/) and shared with a range of other databases and downstream resources. Among the genera that saw the largest number of changes were Penicillium, Talaromyces, Cladosporium, Acremonium, and Alternaria, all of them of significant importance in both culture-based and culture-independent surveys of the built environment.UCIBIO - Applied Molecular Biosciences UnitDCV - Departamento de Ciências da VidaRUNNilsson, R. HenrikTaylor, Andy F. S.Adams, Rachel I.Baschien, ChristianeBengtsson-Palme, JohanCangren, PatrikColeine, ClaudiaDaniel, Heide MarieGlassman, Sydney I.Hirooka, YuuriIrinyi, LaszloIršenaite, RedaMartin-Sanchez, Pedro M.Meyer, WielandOh, Seung YoonSampaio, José PauloSeifert, Keith A.Sklenář, FrantisekStubbe, DirkSuh, Sung OuiSummerbell, RichardSvantesson, StenUnterseher, MartinVisagie, Cobus M.Weiss, MichaelWoudenberg, Joyce H. C.Wurzbacher, ChristianVan Den Wyngaert, SilkeYilmaz, NerimanYurkov, AndreyKõljalg, UrmasAbarenkov, Kessy2019-07-03T22:42:21Z2018-01-082018-01-08T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/article18application/pdfhttps://doi.org/10.3897/mycokeys.28.20887eng1314-4057PURE: 13548829http://www.scopus.com/inward/record.url?scp=85041128124&partnerID=8YFLogxKhttps://doi.org/10.3897/mycokeys.28.20887info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2024-03-11T04:34:17Zoai:run.unl.pt:10362/74422Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-20T03:35:25.376135Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse |
| dc.title.none.fl_str_mv |
Taxonomic annotation of public fungal ITS sequences from the built environment - A report from an April 10-11, 2017 workshop (Aberdeen, UK) |
| title |
Taxonomic annotation of public fungal ITS sequences from the built environment - A report from an April 10-11, 2017 workshop (Aberdeen, UK) |
| spellingShingle |
Taxonomic annotation of public fungal ITS sequences from the built environment - A report from an April 10-11, 2017 workshop (Aberdeen, UK) Nilsson, R. Henrik Built environment Fungi Indoor mycobiome Metadata Molecular identification Open data Sequence annotation Systematics Taxonomy Ecology, Evolution, Behavior and Systematics SDG 3 - Good Health and Well-being |
| title_short |
Taxonomic annotation of public fungal ITS sequences from the built environment - A report from an April 10-11, 2017 workshop (Aberdeen, UK) |
| title_full |
Taxonomic annotation of public fungal ITS sequences from the built environment - A report from an April 10-11, 2017 workshop (Aberdeen, UK) |
| title_fullStr |
Taxonomic annotation of public fungal ITS sequences from the built environment - A report from an April 10-11, 2017 workshop (Aberdeen, UK) |
| title_full_unstemmed |
Taxonomic annotation of public fungal ITS sequences from the built environment - A report from an April 10-11, 2017 workshop (Aberdeen, UK) |
| title_sort |
Taxonomic annotation of public fungal ITS sequences from the built environment - A report from an April 10-11, 2017 workshop (Aberdeen, UK) |
| author |
Nilsson, R. Henrik |
| author_facet |
Nilsson, R. Henrik Taylor, Andy F. S. Adams, Rachel I. Baschien, Christiane Bengtsson-Palme, Johan Cangren, Patrik Coleine, Claudia Daniel, Heide Marie Glassman, Sydney I. Hirooka, Yuuri Irinyi, Laszlo Iršenaite, Reda Martin-Sanchez, Pedro M. Meyer, Wieland Oh, Seung Yoon Sampaio, José Paulo Seifert, Keith A. Sklenář, Frantisek Stubbe, Dirk Suh, Sung Oui Summerbell, Richard Svantesson, Sten Unterseher, Martin Visagie, Cobus M. Weiss, Michael Woudenberg, Joyce H. C. Wurzbacher, Christian Van Den Wyngaert, Silke Yilmaz, Neriman Yurkov, Andrey Kõljalg, Urmas Abarenkov, Kessy |
| author_role |
author |
| author2 |
Taylor, Andy F. S. Adams, Rachel I. Baschien, Christiane Bengtsson-Palme, Johan Cangren, Patrik Coleine, Claudia Daniel, Heide Marie Glassman, Sydney I. Hirooka, Yuuri Irinyi, Laszlo Iršenaite, Reda Martin-Sanchez, Pedro M. Meyer, Wieland Oh, Seung Yoon Sampaio, José Paulo Seifert, Keith A. Sklenář, Frantisek Stubbe, Dirk Suh, Sung Oui Summerbell, Richard Svantesson, Sten Unterseher, Martin Visagie, Cobus M. Weiss, Michael Woudenberg, Joyce H. C. Wurzbacher, Christian Van Den Wyngaert, Silke Yilmaz, Neriman Yurkov, Andrey Kõljalg, Urmas Abarenkov, Kessy |
| author2_role |
author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author author |
| dc.contributor.none.fl_str_mv |
UCIBIO - Applied Molecular Biosciences Unit DCV - Departamento de Ciências da Vida RUN |
| dc.contributor.author.fl_str_mv |
Nilsson, R. Henrik Taylor, Andy F. S. Adams, Rachel I. Baschien, Christiane Bengtsson-Palme, Johan Cangren, Patrik Coleine, Claudia Daniel, Heide Marie Glassman, Sydney I. Hirooka, Yuuri Irinyi, Laszlo Iršenaite, Reda Martin-Sanchez, Pedro M. Meyer, Wieland Oh, Seung Yoon Sampaio, José Paulo Seifert, Keith A. Sklenář, Frantisek Stubbe, Dirk Suh, Sung Oui Summerbell, Richard Svantesson, Sten Unterseher, Martin Visagie, Cobus M. Weiss, Michael Woudenberg, Joyce H. C. Wurzbacher, Christian Van Den Wyngaert, Silke Yilmaz, Neriman Yurkov, Andrey Kõljalg, Urmas Abarenkov, Kessy |
| dc.subject.por.fl_str_mv |
Built environment Fungi Indoor mycobiome Metadata Molecular identification Open data Sequence annotation Systematics Taxonomy Ecology, Evolution, Behavior and Systematics SDG 3 - Good Health and Well-being |
| topic |
Built environment Fungi Indoor mycobiome Metadata Molecular identification Open data Sequence annotation Systematics Taxonomy Ecology, Evolution, Behavior and Systematics SDG 3 - Good Health and Well-being |
| description |
The UNITE database community gratefully acknowledges support from the Alfred P. Sloan Foundation. HN and CW gratefully acknowledges financial support from Stiftelsen Olle Engkvist Byggmastare, Stiftelsen Lars Hiertas Minne, Kapten Carl Stenholms Donationsfond, and Birgit och Birger Walhstroms Minnesfond. CW gratefully acknowledges a Marie Sklodowska-Curie post doctoral grant from the ERC. |
| publishDate |
2018 |
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2018-01-08 2018-01-08T00:00:00Z 2019-07-03T22:42:21Z |
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info:eu-repo/semantics/publishedVersion |
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info:eu-repo/semantics/article |
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article |
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https://doi.org/10.3897/mycokeys.28.20887 |
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https://doi.org/10.3897/mycokeys.28.20887 |
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eng |
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eng |
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1314-4057 PURE: 13548829 http://www.scopus.com/inward/record.url?scp=85041128124&partnerID=8YFLogxK https://doi.org/10.3897/mycokeys.28.20887 |
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info:eu-repo/semantics/openAccess |
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openAccess |
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