Noninvasive molecular sexing: An evaluation and validation of the SRY- and amelogenin-based method in three new lemur species

Detalhes bibliográficos
Autor(a) principal: Vanpé, Cécile
Data de Publicação: 2013
Outros Autores: Salmona, Jordi, Pais, Isa, Kun-Rodrigues, Célia, Pichon, Claire, Meyler, Samuel Viana, Rabarivola, Clément, Lewis, Rebecca J., Ibouroi, Mohamed Thani, Chikhi, Lounès
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10400.7/568
Resumo: Many lemur species are arboreal, elusive, and/or nocturnal and are consequently difficult to approach, observe and catch. In addition, most of them are endangered. For these reasons, non-invasive sampling is especially useful in primates including lemurs. A key issue in conservation and ecological studies is to identify the sex of the sampled individuals to investigate sex-biased dispersal, parentage, social organization and population sex ratio. Several molecular tests of sex are available in apes and monkeys, but only a handful of them work in the lemuriform clade. Among these tests, the coamplification of the SRY gene with the amelogenin X gene using strepsirhine-specific X primers seems particularly promising, but the reliability and validity of this sexing test have not been properly assessed yet. In this study, we (i) show that this molecular sexing test works on three additional lemur species (Microcebus tavaratra, Propithecus coronatus and P. verreauxi) from two previously untested genera and one previously untested family, suggesting that these markers are likely to be universal among lemurs and other strepsirrhines; (ii) provide the first evidence that this PCR-based sexing test works on degraded DNA obtained from noninvasive samples; (iii) validate the approach using a large number of known-sex individuals and a multiple-tubes approach, and show that mismatches between the field sex and the final molecular consensus sex occur in less than 10% of all the samples and that most of these mismatches were likely linked to incorrect sex determinations in the field rather than genotyping errors.
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spelling Noninvasive molecular sexing: An evaluation and validation of the SRY- and amelogenin-based method in three new lemur speciesPCR-based sex testnon-invasive samplesPropithecusMicrocebusmultiple-tubes approachMany lemur species are arboreal, elusive, and/or nocturnal and are consequently difficult to approach, observe and catch. In addition, most of them are endangered. For these reasons, non-invasive sampling is especially useful in primates including lemurs. A key issue in conservation and ecological studies is to identify the sex of the sampled individuals to investigate sex-biased dispersal, parentage, social organization and population sex ratio. Several molecular tests of sex are available in apes and monkeys, but only a handful of them work in the lemuriform clade. Among these tests, the coamplification of the SRY gene with the amelogenin X gene using strepsirhine-specific X primers seems particularly promising, but the reliability and validity of this sexing test have not been properly assessed yet. In this study, we (i) show that this molecular sexing test works on three additional lemur species (Microcebus tavaratra, Propithecus coronatus and P. verreauxi) from two previously untested genera and one previously untested family, suggesting that these markers are likely to be universal among lemurs and other strepsirrhines; (ii) provide the first evidence that this PCR-based sexing test works on degraded DNA obtained from noninvasive samples; (iii) validate the approach using a large number of known-sex individuals and a multiple-tubes approach, and show that mismatches between the field sex and the final molecular consensus sex occur in less than 10% of all the samples and that most of these mismatches were likely linked to incorrect sex determinations in the field rather than genotyping errors.FCT fellowship: (SFRH/BPD/73675/2010); Institut Français de la Biodiversité grant: (CD-AOOI-07-003); Programme Biodiversité de l'Océan Indien grant: (CD-AOOI-07-003); Laboratoire d'Excellence (LABEX) entitled TULIP grant: (ANR -10-LABX-41); Instituto Gulbenkian de Ciência- Optimus!Alive-IGC fellowship: (UMR 7206 – CNRS).WileyARCAVanpé, CécileSalmona, JordiPais, IsaKun-Rodrigues, CéliaPichon, ClaireMeyler, Samuel VianaRabarivola, ClémentLewis, Rebecca J.Ibouroi, Mohamed ThaniChikhi, Lounès2016-03-22T13:17:36Z2013-032013-03-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10400.7/568engVanpé, C., Salmona, J., Pais, I., Kun-Rodrigues, C., Pichon, C., Meyler, S. V., Rabarivola, C., Lewis, R. J., Ibouroi, M. T. and Chikhi, L. (2013), Noninvasive molecular sexing: An evaluation and validation of the SRY- and amelogenin-based method in three new lemur species. Am. J. Phys. Anthropol., 150: 492–503. doi: 10.1002/ajpa.2222210.1002/ajpa.22222info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2022-11-29T14:34:56Zoai:arca.igc.gulbenkian.pt:10400.7/568Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T16:11:49.013969Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Noninvasive molecular sexing: An evaluation and validation of the SRY- and amelogenin-based method in three new lemur species
title Noninvasive molecular sexing: An evaluation and validation of the SRY- and amelogenin-based method in three new lemur species
spellingShingle Noninvasive molecular sexing: An evaluation and validation of the SRY- and amelogenin-based method in three new lemur species
Vanpé, Cécile
PCR-based sex test
non-invasive samples
Propithecus
Microcebus
multiple-tubes approach
title_short Noninvasive molecular sexing: An evaluation and validation of the SRY- and amelogenin-based method in three new lemur species
title_full Noninvasive molecular sexing: An evaluation and validation of the SRY- and amelogenin-based method in three new lemur species
title_fullStr Noninvasive molecular sexing: An evaluation and validation of the SRY- and amelogenin-based method in three new lemur species
title_full_unstemmed Noninvasive molecular sexing: An evaluation and validation of the SRY- and amelogenin-based method in three new lemur species
title_sort Noninvasive molecular sexing: An evaluation and validation of the SRY- and amelogenin-based method in three new lemur species
author Vanpé, Cécile
author_facet Vanpé, Cécile
Salmona, Jordi
Pais, Isa
Kun-Rodrigues, Célia
Pichon, Claire
Meyler, Samuel Viana
Rabarivola, Clément
Lewis, Rebecca J.
Ibouroi, Mohamed Thani
Chikhi, Lounès
author_role author
author2 Salmona, Jordi
Pais, Isa
Kun-Rodrigues, Célia
Pichon, Claire
Meyler, Samuel Viana
Rabarivola, Clément
Lewis, Rebecca J.
Ibouroi, Mohamed Thani
Chikhi, Lounès
author2_role author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv ARCA
dc.contributor.author.fl_str_mv Vanpé, Cécile
Salmona, Jordi
Pais, Isa
Kun-Rodrigues, Célia
Pichon, Claire
Meyler, Samuel Viana
Rabarivola, Clément
Lewis, Rebecca J.
Ibouroi, Mohamed Thani
Chikhi, Lounès
dc.subject.por.fl_str_mv PCR-based sex test
non-invasive samples
Propithecus
Microcebus
multiple-tubes approach
topic PCR-based sex test
non-invasive samples
Propithecus
Microcebus
multiple-tubes approach
description Many lemur species are arboreal, elusive, and/or nocturnal and are consequently difficult to approach, observe and catch. In addition, most of them are endangered. For these reasons, non-invasive sampling is especially useful in primates including lemurs. A key issue in conservation and ecological studies is to identify the sex of the sampled individuals to investigate sex-biased dispersal, parentage, social organization and population sex ratio. Several molecular tests of sex are available in apes and monkeys, but only a handful of them work in the lemuriform clade. Among these tests, the coamplification of the SRY gene with the amelogenin X gene using strepsirhine-specific X primers seems particularly promising, but the reliability and validity of this sexing test have not been properly assessed yet. In this study, we (i) show that this molecular sexing test works on three additional lemur species (Microcebus tavaratra, Propithecus coronatus and P. verreauxi) from two previously untested genera and one previously untested family, suggesting that these markers are likely to be universal among lemurs and other strepsirrhines; (ii) provide the first evidence that this PCR-based sexing test works on degraded DNA obtained from noninvasive samples; (iii) validate the approach using a large number of known-sex individuals and a multiple-tubes approach, and show that mismatches between the field sex and the final molecular consensus sex occur in less than 10% of all the samples and that most of these mismatches were likely linked to incorrect sex determinations in the field rather than genotyping errors.
publishDate 2013
dc.date.none.fl_str_mv 2013-03
2013-03-01T00:00:00Z
2016-03-22T13:17:36Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10400.7/568
url http://hdl.handle.net/10400.7/568
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Vanpé, C., Salmona, J., Pais, I., Kun-Rodrigues, C., Pichon, C., Meyler, S. V., Rabarivola, C., Lewis, R. J., Ibouroi, M. T. and Chikhi, L. (2013), Noninvasive molecular sexing: An evaluation and validation of the SRY- and amelogenin-based method in three new lemur species. Am. J. Phys. Anthropol., 150: 492–503. doi: 10.1002/ajpa.22222
10.1002/ajpa.22222
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Wiley
publisher.none.fl_str_mv Wiley
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
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collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
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