Ecological genetics in the North Atlantic: environmental gradients and adaptation at specific loci

Detalhes bibliográficos
Autor(a) principal: Schmidt, P. S.
Data de Publicação: 2008
Outros Autores: Serrão, Ester, Pearson, G. A., Riginos, C., Rawson, P. D., Hilbish, Thomas J., Brawley, S. H., Trussell, G. C., Carrington, E., Wethey, D. S., Grahame, J. W., Bonhomme, F., Rand, D. M.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10400.1/4121
Resumo: The North Atlantic intertidal community provides a rich set of organismal and environmental material for the study of ecological genetics. Clearly defined environmental gradients exist at multiple spatial scales: there are broad latitudinal trends in temperature, meso-scale changes in salinity along estuaries, and smaller scale gradients in desiccation and temperature spanning the intertidal range. The geology and geography of the American and European coasts provide natural replication of these gradients, allowing for population genetic analyses of parallel adaptation to environmental stress and heterogeneity. Statistical methods have been developed that provide genomic neutrality tests of population differentiation and aid in the process of candidate gene identification. In this paper, we review studies of marine organisms that illustrate associations between an environmental gradient and specific genetic markers. Such highly differentiated markers become candidate genes for adaptation to the environmental factors in question, but the functional significance of genetic variants must be comprehensively evaluated. We present a set of predictions about locus-specific selection across latitudinal, estuarine, and intertidal gradients that are likely to exist in the North Atlantic. We further present new data and analyses that support and contradict these simple selection models. Some taxa show pronounced clinal variation at certain loci against a background of mild clinal variation at many loci. These cases illustrate the procedures necessary for distinguishing selection driven by internal genomic vs. external environmental factors. We suggest that the North Atlantic intertidal community provides a model system for identifying genes that matter in ecology due to the clarity of the environmental stresses and an extensive experimental literature on ecological function. While these organisms are typically poor genetic and genomic models, advances in comparative genomics have provided access to molecular tools that can now be applied to taxa with well-defined ecologies. As many of the organisms we discuss have tight physiological limits driven by climatic factors, this synthesis of molecular population genetics with marine ecology could provide a sensitive means of assessing evolutionary responses to climate change.
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spelling Ecological genetics in the North Atlantic: environmental gradients and adaptation at specific lociAdaptationClimateClineEndogenous selectionHybrid zoneIntertidalIntertidalPolymorphismThe North Atlantic intertidal community provides a rich set of organismal and environmental material for the study of ecological genetics. Clearly defined environmental gradients exist at multiple spatial scales: there are broad latitudinal trends in temperature, meso-scale changes in salinity along estuaries, and smaller scale gradients in desiccation and temperature spanning the intertidal range. The geology and geography of the American and European coasts provide natural replication of these gradients, allowing for population genetic analyses of parallel adaptation to environmental stress and heterogeneity. Statistical methods have been developed that provide genomic neutrality tests of population differentiation and aid in the process of candidate gene identification. In this paper, we review studies of marine organisms that illustrate associations between an environmental gradient and specific genetic markers. Such highly differentiated markers become candidate genes for adaptation to the environmental factors in question, but the functional significance of genetic variants must be comprehensively evaluated. We present a set of predictions about locus-specific selection across latitudinal, estuarine, and intertidal gradients that are likely to exist in the North Atlantic. We further present new data and analyses that support and contradict these simple selection models. Some taxa show pronounced clinal variation at certain loci against a background of mild clinal variation at many loci. These cases illustrate the procedures necessary for distinguishing selection driven by internal genomic vs. external environmental factors. We suggest that the North Atlantic intertidal community provides a model system for identifying genes that matter in ecology due to the clarity of the environmental stresses and an extensive experimental literature on ecological function. While these organisms are typically poor genetic and genomic models, advances in comparative genomics have provided access to molecular tools that can now be applied to taxa with well-defined ecologies. As many of the organisms we discuss have tight physiological limits driven by climatic factors, this synthesis of molecular population genetics with marine ecology could provide a sensitive means of assessing evolutionary responses to climate change.Ecological Society of AmericaSapientiaSchmidt, P. S.Serrão, EsterPearson, G. A.Riginos, C.Rawson, P. D.Hilbish, Thomas J.Brawley, S. H.Trussell, G. C.Carrington, E.Wethey, D. S.Grahame, J. W.Bonhomme, F.Rand, D. M.2014-05-29T14:32:17Z20082014-05-21T13:32:19Z2008-01-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10400.1/4121engSchmidt, P.S.; Serrão, E.A.; Pearson, G.A.; Riginos, C.; Rawson, P.D.; Hilbish, T.J.; Brawley, S.H.; Trussell, G.C.; Carrington, E.; Wethey, D.S.; Grahame, J.W.; Bonhomme, F.; Rand, D.M.Ecological genetics in the North Atlantic: Environmental gradients and adaptation at specific loci, Ecology, 89, 11 SUPPL., S91-S107, 2008.0012-9658AUT: ESE00527;http://dx.doi.org/10.1890/07-1162.1info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-07-24T10:15:14Zoai:sapientia.ualg.pt:10400.1/4121Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T19:57:31.755804Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Ecological genetics in the North Atlantic: environmental gradients and adaptation at specific loci
title Ecological genetics in the North Atlantic: environmental gradients and adaptation at specific loci
spellingShingle Ecological genetics in the North Atlantic: environmental gradients and adaptation at specific loci
Schmidt, P. S.
Adaptation
Climate
Cline
Endogenous selection
Hybrid zone
Intertidal
Intertidal
Polymorphism
title_short Ecological genetics in the North Atlantic: environmental gradients and adaptation at specific loci
title_full Ecological genetics in the North Atlantic: environmental gradients and adaptation at specific loci
title_fullStr Ecological genetics in the North Atlantic: environmental gradients and adaptation at specific loci
title_full_unstemmed Ecological genetics in the North Atlantic: environmental gradients and adaptation at specific loci
title_sort Ecological genetics in the North Atlantic: environmental gradients and adaptation at specific loci
author Schmidt, P. S.
author_facet Schmidt, P. S.
Serrão, Ester
Pearson, G. A.
Riginos, C.
Rawson, P. D.
Hilbish, Thomas J.
Brawley, S. H.
Trussell, G. C.
Carrington, E.
Wethey, D. S.
Grahame, J. W.
Bonhomme, F.
Rand, D. M.
author_role author
author2 Serrão, Ester
Pearson, G. A.
Riginos, C.
Rawson, P. D.
Hilbish, Thomas J.
Brawley, S. H.
Trussell, G. C.
Carrington, E.
Wethey, D. S.
Grahame, J. W.
Bonhomme, F.
Rand, D. M.
author2_role author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Sapientia
dc.contributor.author.fl_str_mv Schmidt, P. S.
Serrão, Ester
Pearson, G. A.
Riginos, C.
Rawson, P. D.
Hilbish, Thomas J.
Brawley, S. H.
Trussell, G. C.
Carrington, E.
Wethey, D. S.
Grahame, J. W.
Bonhomme, F.
Rand, D. M.
dc.subject.por.fl_str_mv Adaptation
Climate
Cline
Endogenous selection
Hybrid zone
Intertidal
Intertidal
Polymorphism
topic Adaptation
Climate
Cline
Endogenous selection
Hybrid zone
Intertidal
Intertidal
Polymorphism
description The North Atlantic intertidal community provides a rich set of organismal and environmental material for the study of ecological genetics. Clearly defined environmental gradients exist at multiple spatial scales: there are broad latitudinal trends in temperature, meso-scale changes in salinity along estuaries, and smaller scale gradients in desiccation and temperature spanning the intertidal range. The geology and geography of the American and European coasts provide natural replication of these gradients, allowing for population genetic analyses of parallel adaptation to environmental stress and heterogeneity. Statistical methods have been developed that provide genomic neutrality tests of population differentiation and aid in the process of candidate gene identification. In this paper, we review studies of marine organisms that illustrate associations between an environmental gradient and specific genetic markers. Such highly differentiated markers become candidate genes for adaptation to the environmental factors in question, but the functional significance of genetic variants must be comprehensively evaluated. We present a set of predictions about locus-specific selection across latitudinal, estuarine, and intertidal gradients that are likely to exist in the North Atlantic. We further present new data and analyses that support and contradict these simple selection models. Some taxa show pronounced clinal variation at certain loci against a background of mild clinal variation at many loci. These cases illustrate the procedures necessary for distinguishing selection driven by internal genomic vs. external environmental factors. We suggest that the North Atlantic intertidal community provides a model system for identifying genes that matter in ecology due to the clarity of the environmental stresses and an extensive experimental literature on ecological function. While these organisms are typically poor genetic and genomic models, advances in comparative genomics have provided access to molecular tools that can now be applied to taxa with well-defined ecologies. As many of the organisms we discuss have tight physiological limits driven by climatic factors, this synthesis of molecular population genetics with marine ecology could provide a sensitive means of assessing evolutionary responses to climate change.
publishDate 2008
dc.date.none.fl_str_mv 2008
2008-01-01T00:00:00Z
2014-05-29T14:32:17Z
2014-05-21T13:32:19Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10400.1/4121
url http://hdl.handle.net/10400.1/4121
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Schmidt, P.S.; Serrão, E.A.; Pearson, G.A.; Riginos, C.; Rawson, P.D.; Hilbish, T.J.; Brawley, S.H.; Trussell, G.C.; Carrington, E.; Wethey, D.S.; Grahame, J.W.; Bonhomme, F.; Rand, D.M.Ecological genetics in the North Atlantic: Environmental gradients and adaptation at specific loci, Ecology, 89, 11 SUPPL., S91-S107, 2008.
0012-9658
AUT: ESE00527;
http://dx.doi.org/10.1890/07-1162.1
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Ecological Society of America
publisher.none.fl_str_mv Ecological Society of America
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
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