TypOn: the microbial typing ontology

Detalhes bibliográficos
Autor(a) principal: Vaz, Cátia
Data de Publicação: 2014
Outros Autores: Francisco, Alexandre P., Silva, Mickael, Jolley, Keith A., Bray, James E., Pouseele, Hannes, Rothganger, Joerg, Ramirez, Mário, Carrico, Joao Andre
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10451/51347
Resumo: © 2014 Vaz et al.; licensee BioMed Central Ltd. This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
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spelling TypOn: the microbial typing ontologyKnowledge representationMicrobial typing methodsOntology© 2014 Vaz et al.; licensee BioMed Central Ltd. This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.Bacterial identification and characterization at subspecies level is commonly known as Microbial Typing. Currently, these methodologies are fundamental tools in Clinical Microbiology and bacterial population genetics studies to track outbreaks and to study the dissemination and evolution of virulence or pathogenicity factors and antimicrobial resistance. Due to advances in DNA sequencing technology, these methods have evolved to become focused on sequence-based methodologies. The need to have a common understanding of the concepts described and the ability to share results within the community at a global level are increasingly important requisites for the continued development of portable and accurate sequence-based typing methods, especially with the recent introduction of Next Generation Sequencing (NGS) technologies. In this paper, we present an ontology designed for the sequence-based microbial typing field, capable of describing any of the sequence-based typing methodologies currently in use and being developed, including novel NGS based methods. This is a fundamental step to accurately describe, analyze, curate, and manage information for microbial typing based on sequence based typing methods.This study was partly supported by the European Community grant FP7-278864-2 (PathoNgenTrace, http://www.patho-ngen-trace.eu/), and by national funds through FCT – Fundação para a Ciência e Tecnologia, under projects PTDC/EIA-CCO/118533/2010, EXCL/EEI-ESS/0257/2012, and PEst-OE/EEI/LA0021/2013.BioMed Central, Ltd.Repositório da Universidade de LisboaVaz, CátiaFrancisco, Alexandre P.Silva, MickaelJolley, Keith A.Bray, James E.Pouseele, HannesRothganger, JoergRamirez, MárioCarrico, Joao Andre2022-02-16T14:21:52Z20142014-01-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10451/51347engJ Biomed Semantics . 2014 Oct 18;5(1):4310.1186/2041-1480-5-432041-1480info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-11-08T16:55:58Zoai:repositorio.ul.pt:10451/51347Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T22:02:38.523017Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv TypOn: the microbial typing ontology
title TypOn: the microbial typing ontology
spellingShingle TypOn: the microbial typing ontology
Vaz, Cátia
Knowledge representation
Microbial typing methods
Ontology
title_short TypOn: the microbial typing ontology
title_full TypOn: the microbial typing ontology
title_fullStr TypOn: the microbial typing ontology
title_full_unstemmed TypOn: the microbial typing ontology
title_sort TypOn: the microbial typing ontology
author Vaz, Cátia
author_facet Vaz, Cátia
Francisco, Alexandre P.
Silva, Mickael
Jolley, Keith A.
Bray, James E.
Pouseele, Hannes
Rothganger, Joerg
Ramirez, Mário
Carrico, Joao Andre
author_role author
author2 Francisco, Alexandre P.
Silva, Mickael
Jolley, Keith A.
Bray, James E.
Pouseele, Hannes
Rothganger, Joerg
Ramirez, Mário
Carrico, Joao Andre
author2_role author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv Repositório da Universidade de Lisboa
dc.contributor.author.fl_str_mv Vaz, Cátia
Francisco, Alexandre P.
Silva, Mickael
Jolley, Keith A.
Bray, James E.
Pouseele, Hannes
Rothganger, Joerg
Ramirez, Mário
Carrico, Joao Andre
dc.subject.por.fl_str_mv Knowledge representation
Microbial typing methods
Ontology
topic Knowledge representation
Microbial typing methods
Ontology
description © 2014 Vaz et al.; licensee BioMed Central Ltd. This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
publishDate 2014
dc.date.none.fl_str_mv 2014
2014-01-01T00:00:00Z
2022-02-16T14:21:52Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10451/51347
url http://hdl.handle.net/10451/51347
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv J Biomed Semantics . 2014 Oct 18;5(1):43
10.1186/2041-1480-5-43
2041-1480
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv BioMed Central, Ltd.
publisher.none.fl_str_mv BioMed Central, Ltd.
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron:RCAAP
instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron_str RCAAP
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reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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