Proteomic analysis of nitrate-dependent acetone degradation by Alicycliphilus denitrificans strain BC

Detalhes bibliográficos
Autor(a) principal: Oosterkamp, Margreet J.
Data de Publicação: 2015
Outros Autores: Boeren, Sjef, Atashgahi, Siavash, Plugge, Caroline M., Schaap, Peter J., Stams, Alfons Johannes Maria
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/1822/41757
Resumo: Alicycliphilus denitrificans strain BC grows anaerobically on acetone with nitrate as electron acceptor. Comparative proteomics of cultures of A. denitrificans strain BC grown on either acetone or acetate with nitrate was performed to study the enzymes involved in the acetone degradation pathway. In the proposed acetone degradation pathway, an acetone carboxylase converts acetone to acetoacetate, an AMP-dependent synthetase/ligase converts acetoacetate to acetoacetyl-CoA, and an acetyl-CoA acetyltransferase cleaves acetoacetyl-CoA to two acetyl-CoA. We also found a putative aldehyde dehydrogenase associated with acetone degradation. This enzyme functioned as a -hydroxybutyrate dehydrogenase catalyzing the conversion of surplus acetoacetate to -hydroxybutyrate that may be converted to the energy and carbon storage compound, poly--hydroxybutyrate. Accordingly, we confirmed the formation of poly-?-hydroxybutyrate in acetone-grown cells of strain BC. Our findings provide insight in nitrate-dependent acetone degradation that is activated by carboxylation of acetone. This will aid studies of similar pathways found in other microorganisms degrading acetone with nitrate or sulfate as electron acceptor.
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spelling Proteomic analysis of nitrate-dependent acetone degradation by Alicycliphilus denitrificans strain BCAlicycliphilus denitrificansAcetoneProteomeAnaerobicNitrateβ-hydroxybutyratebeta-hydroxybutyrateScience & TechnologyAlicycliphilus denitrificans strain BC grows anaerobically on acetone with nitrate as electron acceptor. Comparative proteomics of cultures of A. denitrificans strain BC grown on either acetone or acetate with nitrate was performed to study the enzymes involved in the acetone degradation pathway. In the proposed acetone degradation pathway, an acetone carboxylase converts acetone to acetoacetate, an AMP-dependent synthetase/ligase converts acetoacetate to acetoacetyl-CoA, and an acetyl-CoA acetyltransferase cleaves acetoacetyl-CoA to two acetyl-CoA. We also found a putative aldehyde dehydrogenase associated with acetone degradation. This enzyme functioned as a -hydroxybutyrate dehydrogenase catalyzing the conversion of surplus acetoacetate to -hydroxybutyrate that may be converted to the energy and carbon storage compound, poly--hydroxybutyrate. Accordingly, we confirmed the formation of poly-?-hydroxybutyrate in acetone-grown cells of strain BC. Our findings provide insight in nitrate-dependent acetone degradation that is activated by carboxylation of acetone. This will aid studies of similar pathways found in other microorganisms degrading acetone with nitrate or sulfate as electron acceptor.This work was supported by the Technology Foundation, the Applied Science Division (STW) of the Netherlands Organization for Scientific Research (NWO) [project 08053]. Additional funding was provided by BE-BASIC [grant F08.004.01 to SA], an ERC grant [project 323009 to AJMS] and the Gravitation grant [project 024.002.002 to AJMS] of the Netherlands Ministry of Education, Culture and Science and NWO.Oxford University PressUniversidade do MinhoOosterkamp, Margreet J.Boeren, SjefAtashgahi, SiavashPlugge, Caroline M.Schaap, Peter J.Stams, Alfons Johannes Maria20152015-01-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/1822/41757engOosterkamp, Margreet J.; Boeren, Sjef; Atashgahi, Siavash; Plugge, Caroline M.; Schaap, Peter J.; Stams, A. J. M., Proteomic analysis of nitrate-dependent acetone degradation by Alicycliphilus denitrificans strain BC. FEMS Microbiology Letters, 362(11), 1-7, 20150378-109710.1093/femsle/fnv08025977262http://femsle.oxfordjournals.org/info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-07-21T12:49:37Zoai:repositorium.sdum.uminho.pt:1822/41757Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T19:48:06.614404Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Proteomic analysis of nitrate-dependent acetone degradation by Alicycliphilus denitrificans strain BC
title Proteomic analysis of nitrate-dependent acetone degradation by Alicycliphilus denitrificans strain BC
spellingShingle Proteomic analysis of nitrate-dependent acetone degradation by Alicycliphilus denitrificans strain BC
Oosterkamp, Margreet J.
Alicycliphilus denitrificans
Acetone
Proteome
Anaerobic
Nitrate
β-hydroxybutyrate
beta-hydroxybutyrate
Science & Technology
title_short Proteomic analysis of nitrate-dependent acetone degradation by Alicycliphilus denitrificans strain BC
title_full Proteomic analysis of nitrate-dependent acetone degradation by Alicycliphilus denitrificans strain BC
title_fullStr Proteomic analysis of nitrate-dependent acetone degradation by Alicycliphilus denitrificans strain BC
title_full_unstemmed Proteomic analysis of nitrate-dependent acetone degradation by Alicycliphilus denitrificans strain BC
title_sort Proteomic analysis of nitrate-dependent acetone degradation by Alicycliphilus denitrificans strain BC
author Oosterkamp, Margreet J.
author_facet Oosterkamp, Margreet J.
Boeren, Sjef
Atashgahi, Siavash
Plugge, Caroline M.
Schaap, Peter J.
Stams, Alfons Johannes Maria
author_role author
author2 Boeren, Sjef
Atashgahi, Siavash
Plugge, Caroline M.
Schaap, Peter J.
Stams, Alfons Johannes Maria
author2_role author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade do Minho
dc.contributor.author.fl_str_mv Oosterkamp, Margreet J.
Boeren, Sjef
Atashgahi, Siavash
Plugge, Caroline M.
Schaap, Peter J.
Stams, Alfons Johannes Maria
dc.subject.por.fl_str_mv Alicycliphilus denitrificans
Acetone
Proteome
Anaerobic
Nitrate
β-hydroxybutyrate
beta-hydroxybutyrate
Science & Technology
topic Alicycliphilus denitrificans
Acetone
Proteome
Anaerobic
Nitrate
β-hydroxybutyrate
beta-hydroxybutyrate
Science & Technology
description Alicycliphilus denitrificans strain BC grows anaerobically on acetone with nitrate as electron acceptor. Comparative proteomics of cultures of A. denitrificans strain BC grown on either acetone or acetate with nitrate was performed to study the enzymes involved in the acetone degradation pathway. In the proposed acetone degradation pathway, an acetone carboxylase converts acetone to acetoacetate, an AMP-dependent synthetase/ligase converts acetoacetate to acetoacetyl-CoA, and an acetyl-CoA acetyltransferase cleaves acetoacetyl-CoA to two acetyl-CoA. We also found a putative aldehyde dehydrogenase associated with acetone degradation. This enzyme functioned as a -hydroxybutyrate dehydrogenase catalyzing the conversion of surplus acetoacetate to -hydroxybutyrate that may be converted to the energy and carbon storage compound, poly--hydroxybutyrate. Accordingly, we confirmed the formation of poly-?-hydroxybutyrate in acetone-grown cells of strain BC. Our findings provide insight in nitrate-dependent acetone degradation that is activated by carboxylation of acetone. This will aid studies of similar pathways found in other microorganisms degrading acetone with nitrate or sulfate as electron acceptor.
publishDate 2015
dc.date.none.fl_str_mv 2015
2015-01-01T00:00:00Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/1822/41757
url http://hdl.handle.net/1822/41757
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Oosterkamp, Margreet J.; Boeren, Sjef; Atashgahi, Siavash; Plugge, Caroline M.; Schaap, Peter J.; Stams, A. J. M., Proteomic analysis of nitrate-dependent acetone degradation by Alicycliphilus denitrificans strain BC. FEMS Microbiology Letters, 362(11), 1-7, 2015
0378-1097
10.1093/femsle/fnv080
25977262
http://femsle.oxfordjournals.org/
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Oxford University Press
publisher.none.fl_str_mv Oxford University Press
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron:RCAAP
instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron_str RCAAP
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reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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