REST is a hypoxia-responsive transcriptional repressor

Detalhes bibliográficos
Autor(a) principal: Cavadas, Miguel A. S.
Data de Publicação: 2016
Outros Autores: Mesnieres, Marion, Crifo, Bianca, Manresa, Mario C., Selfridge, Andrew C., Keogh, Ciara E., Fabian, Zsolt, Scholz, Carsten C., Nolan, Karen A., Rocha, Liliane M. A., Tambuwala, Murtaza M., Brown, Stuart, Wdowicz, Anita, Corbett, Danielle, Murphy, Keith J., Godson, Catherine, Cummins, Eoin P., Taylor, Cormac T., Cheong, Alex
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10400.7/702
Resumo: Cellular exposure to hypoxia results in altered gene expression in a range of physiologic and pathophysiologic states. Discrete cohorts of genes can be either up- or down-regulated in response to hypoxia. While the Hypoxia-Inducible Factor (HIF) is the primary driver of hypoxia-induced adaptive gene expression, less is known about the signalling mechanisms regulating hypoxia-dependent gene repression. Using RNA-seq, we demonstrate that equivalent numbers of genes are induced and repressed in human embryonic kidney (HEK293) cells. We demonstrate that nuclear localization of the Repressor Element 1-Silencing Transcription factor (REST) is induced in hypoxia and that REST is responsible for regulating approximately 20% of the hypoxia-repressed genes. Using chromatin immunoprecipitation assays we demonstrate that REST-dependent gene repression is at least in part mediated by direct binding to the promoters of target genes. Based on these data, we propose that REST is a key mediator of gene repression in hypoxia.
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spelling REST is a hypoxia-responsive transcriptional repressorGene silencingTranscriptional regulatory elementsCellular exposure to hypoxia results in altered gene expression in a range of physiologic and pathophysiologic states. Discrete cohorts of genes can be either up- or down-regulated in response to hypoxia. While the Hypoxia-Inducible Factor (HIF) is the primary driver of hypoxia-induced adaptive gene expression, less is known about the signalling mechanisms regulating hypoxia-dependent gene repression. Using RNA-seq, we demonstrate that equivalent numbers of genes are induced and repressed in human embryonic kidney (HEK293) cells. We demonstrate that nuclear localization of the Repressor Element 1-Silencing Transcription factor (REST) is induced in hypoxia and that REST is responsible for regulating approximately 20% of the hypoxia-repressed genes. Using chromatin immunoprecipitation assays we demonstrate that REST-dependent gene repression is at least in part mediated by direct binding to the promoters of target genes. Based on these data, we propose that REST is a key mediator of gene repression in hypoxia.Science Foundation Ireland grant: (06/CE/B1129).Nature Publishing GroupARCACavadas, Miguel A. S.Mesnieres, MarionCrifo, BiancaManresa, Mario C.Selfridge, Andrew C.Keogh, Ciara E.Fabian, ZsoltScholz, Carsten C.Nolan, Karen A.Rocha, Liliane M. A.Tambuwala, Murtaza M.Brown, StuartWdowicz, AnitaCorbett, DanielleMurphy, Keith J.Godson, CatherineCummins, Eoin P.Taylor, Cormac T.Cheong, Alex2016-10-18T14:21:34Z2016-08-172016-08-17T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfapplication/pdfhttp://hdl.handle.net/10400.7/702engCavadas, M. A. S. et al. REST is a hypoxia-responsive transcriptional repressor. Sci. Rep. 6, 31355; doi: 10.1038/srep31355 (2016).10.1038/srep31355info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2022-11-29T14:35:05Zoai:arca.igc.gulbenkian.pt:10400.7/702Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T16:11:56.090847Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv REST is a hypoxia-responsive transcriptional repressor
title REST is a hypoxia-responsive transcriptional repressor
spellingShingle REST is a hypoxia-responsive transcriptional repressor
Cavadas, Miguel A. S.
Gene silencing
Transcriptional regulatory elements
title_short REST is a hypoxia-responsive transcriptional repressor
title_full REST is a hypoxia-responsive transcriptional repressor
title_fullStr REST is a hypoxia-responsive transcriptional repressor
title_full_unstemmed REST is a hypoxia-responsive transcriptional repressor
title_sort REST is a hypoxia-responsive transcriptional repressor
author Cavadas, Miguel A. S.
author_facet Cavadas, Miguel A. S.
Mesnieres, Marion
Crifo, Bianca
Manresa, Mario C.
Selfridge, Andrew C.
Keogh, Ciara E.
Fabian, Zsolt
Scholz, Carsten C.
Nolan, Karen A.
Rocha, Liliane M. A.
Tambuwala, Murtaza M.
Brown, Stuart
Wdowicz, Anita
Corbett, Danielle
Murphy, Keith J.
Godson, Catherine
Cummins, Eoin P.
Taylor, Cormac T.
Cheong, Alex
author_role author
author2 Mesnieres, Marion
Crifo, Bianca
Manresa, Mario C.
Selfridge, Andrew C.
Keogh, Ciara E.
Fabian, Zsolt
Scholz, Carsten C.
Nolan, Karen A.
Rocha, Liliane M. A.
Tambuwala, Murtaza M.
Brown, Stuart
Wdowicz, Anita
Corbett, Danielle
Murphy, Keith J.
Godson, Catherine
Cummins, Eoin P.
Taylor, Cormac T.
Cheong, Alex
author2_role author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
author
dc.contributor.none.fl_str_mv ARCA
dc.contributor.author.fl_str_mv Cavadas, Miguel A. S.
Mesnieres, Marion
Crifo, Bianca
Manresa, Mario C.
Selfridge, Andrew C.
Keogh, Ciara E.
Fabian, Zsolt
Scholz, Carsten C.
Nolan, Karen A.
Rocha, Liliane M. A.
Tambuwala, Murtaza M.
Brown, Stuart
Wdowicz, Anita
Corbett, Danielle
Murphy, Keith J.
Godson, Catherine
Cummins, Eoin P.
Taylor, Cormac T.
Cheong, Alex
dc.subject.por.fl_str_mv Gene silencing
Transcriptional regulatory elements
topic Gene silencing
Transcriptional regulatory elements
description Cellular exposure to hypoxia results in altered gene expression in a range of physiologic and pathophysiologic states. Discrete cohorts of genes can be either up- or down-regulated in response to hypoxia. While the Hypoxia-Inducible Factor (HIF) is the primary driver of hypoxia-induced adaptive gene expression, less is known about the signalling mechanisms regulating hypoxia-dependent gene repression. Using RNA-seq, we demonstrate that equivalent numbers of genes are induced and repressed in human embryonic kidney (HEK293) cells. We demonstrate that nuclear localization of the Repressor Element 1-Silencing Transcription factor (REST) is induced in hypoxia and that REST is responsible for regulating approximately 20% of the hypoxia-repressed genes. Using chromatin immunoprecipitation assays we demonstrate that REST-dependent gene repression is at least in part mediated by direct binding to the promoters of target genes. Based on these data, we propose that REST is a key mediator of gene repression in hypoxia.
publishDate 2016
dc.date.none.fl_str_mv 2016-10-18T14:21:34Z
2016-08-17
2016-08-17T00:00:00Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10400.7/702
url http://hdl.handle.net/10400.7/702
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Cavadas, M. A. S. et al. REST is a hypoxia-responsive transcriptional repressor. Sci. Rep. 6, 31355; doi: 10.1038/srep31355 (2016).
10.1038/srep31355
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
application/pdf
dc.publisher.none.fl_str_mv Nature Publishing Group
publisher.none.fl_str_mv Nature Publishing Group
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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