Admixture and breed traceability in European indigenous pig breeds and wild boar using genome‑wide SNP data
Autor(a) principal: | |
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Data de Publicação: | 2022 |
Outros Autores: | , , , , , , , , , , , , , , , , , , , , , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
Texto Completo: | http://hdl.handle.net/10174/32348 https://doi.org/Dadousis, C., Muñoz, M., Óvilo, C. et al. Admixture and breed traceability in European indigenous pig breeds and wild boar using genome-wide SNP data. Sci Rep 12, 7346 (2022). https://doi.org/10.1038/s41598-022-10698-8 https://doi.org/10.1038/s41598-022-10698-8 |
Resumo: | Preserving diversity of indigenous pig (Sus scrofa) breeds is a key factor to (i) sustain the pork chain (both at local and global scales) including the production of high-quality branded products, (ii) enrich the animal biobanking and (iii) progress conservation policies. Single nucleotide polymorphism (SNP) chips offer the opportunity for whole-genome comparisons among individuals and breeds. Animals from twenty European local pigs breeds, reared in nine countries (Croatia: Black Slavonian, Turopolje; France: Basque, Gascon; Germany: Schwabisch-Hällisches Schwein; Italy: Apulo Calabrese, Casertana, Cinta Senese, Mora Romagnola, Nero Siciliano, Sarda; Lithuania: Indigenous Wattle, White Old Type; Portugal: Alentejana, Bísara; Serbia: Moravka, Swallow-Bellied Mangalitsa; Slovenia: Krškopolje pig; Spain: Iberian, Majorcan Black), and three commercial breeds (Duroc, Landrace and Large White) were sampled and genotyped with the GeneSeek Genomic Profiler (GGP) 70 K HD porcine genotyping chip. A dataset of 51 Wild Boars from nine countries was also added, summing up to 1186 pigs (~ 49 pigs/breed). The aim was to: (i) investigate individual admixture ancestries and (ii) assess breed traceability via discriminant analysis on principal components (DAPC). Albeit the mosaic of shared ancestries found for Nero Siciliano, Sarda and Moravka, admixture analysis indicated independent evolvement for the rest of the breeds. High prediction accuracy of DAPC mark SNP data as a reliable solution for the traceability of breed-specific pig products. |
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Admixture and breed traceability in European indigenous pig breeds and wild boar using genome‑wide SNP dataPreserving diversity of indigenous pig (Sus scrofa) breeds is a key factor to (i) sustain the pork chain (both at local and global scales) including the production of high-quality branded products, (ii) enrich the animal biobanking and (iii) progress conservation policies. Single nucleotide polymorphism (SNP) chips offer the opportunity for whole-genome comparisons among individuals and breeds. Animals from twenty European local pigs breeds, reared in nine countries (Croatia: Black Slavonian, Turopolje; France: Basque, Gascon; Germany: Schwabisch-Hällisches Schwein; Italy: Apulo Calabrese, Casertana, Cinta Senese, Mora Romagnola, Nero Siciliano, Sarda; Lithuania: Indigenous Wattle, White Old Type; Portugal: Alentejana, Bísara; Serbia: Moravka, Swallow-Bellied Mangalitsa; Slovenia: Krškopolje pig; Spain: Iberian, Majorcan Black), and three commercial breeds (Duroc, Landrace and Large White) were sampled and genotyped with the GeneSeek Genomic Profiler (GGP) 70 K HD porcine genotyping chip. A dataset of 51 Wild Boars from nine countries was also added, summing up to 1186 pigs (~ 49 pigs/breed). The aim was to: (i) investigate individual admixture ancestries and (ii) assess breed traceability via discriminant analysis on principal components (DAPC). Albeit the mosaic of shared ancestries found for Nero Siciliano, Sarda and Moravka, admixture analysis indicated independent evolvement for the rest of the breeds. High prediction accuracy of DAPC mark SNP data as a reliable solution for the traceability of breed-specific pig products.Springer Nature2022-07-20T14:14:45Z2022-07-202022-05-05T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://hdl.handle.net/10174/32348https://doi.org/Dadousis, C., Muñoz, M., Óvilo, C. et al. Admixture and breed traceability in European indigenous pig breeds and wild boar using genome-wide SNP data. Sci Rep 12, 7346 (2022). https://doi.org/10.1038/s41598-022-10698-8http://hdl.handle.net/10174/32348https://doi.org/10.1038/s41598-022-10698-8enghttps://www.nature.com/articles/s41598-022-10698-8https://www.nature.com/articles/s41598-022-10698-8.pdfDepartamento de Medicina Veterinária; Departamento de Zootecnia; Escola de Ciências e Tecnologiandndndndndndndrmcc@uevora.ptndndndndndjmartins@uevora.ptndndndndndndndndndndndndndndnd207Dadousis, ChristosMuñoz, MariaÓvilo, CristinaFabbri, Maria ChiaraAraújo, José PedroBovo, SamueleČandek Potokar, MarjetaCharneca, RuiCrovetti, AlessandroGallo, MaurizioGarcía‑Casco, Juan MaríaKarolyi, DanijelKušec, GoranMartins, José ManuelMercat, Marie‑JoséPugliese, CarolinaQuintanilla, RaquelRadović, ČedomirRazmaite, VioletaRibani, AnisaRiquet, JulietSavić, RadomirSchiavo, GiuseppinaŠkrlep, MartinTinarelli, SilviaUsai, GrazianoZimmer, ChristophFontanesi, LucaBozzi, Riccardoinfo:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-08-08T04:46:19ZPortal AgregadorONG |
dc.title.none.fl_str_mv |
Admixture and breed traceability in European indigenous pig breeds and wild boar using genome‑wide SNP data |
title |
Admixture and breed traceability in European indigenous pig breeds and wild boar using genome‑wide SNP data |
spellingShingle |
Admixture and breed traceability in European indigenous pig breeds and wild boar using genome‑wide SNP data Dadousis, Christos |
title_short |
Admixture and breed traceability in European indigenous pig breeds and wild boar using genome‑wide SNP data |
title_full |
Admixture and breed traceability in European indigenous pig breeds and wild boar using genome‑wide SNP data |
title_fullStr |
Admixture and breed traceability in European indigenous pig breeds and wild boar using genome‑wide SNP data |
title_full_unstemmed |
Admixture and breed traceability in European indigenous pig breeds and wild boar using genome‑wide SNP data |
title_sort |
Admixture and breed traceability in European indigenous pig breeds and wild boar using genome‑wide SNP data |
author |
Dadousis, Christos |
author_facet |
Dadousis, Christos Muñoz, Maria Óvilo, Cristina Fabbri, Maria Chiara Araújo, José Pedro Bovo, Samuele Čandek Potokar, Marjeta Charneca, Rui Crovetti, Alessandro Gallo, Maurizio García‑Casco, Juan María Karolyi, Danijel Kušec, Goran Martins, José Manuel Mercat, Marie‑José Pugliese, Carolina Quintanilla, Raquel Radović, Čedomir Razmaite, Violeta Ribani, Anisa Riquet, Juliet Savić, Radomir Schiavo, Giuseppina Škrlep, Martin Tinarelli, Silvia Usai, Graziano Zimmer, Christoph Fontanesi, Luca Bozzi, Riccardo |
author_role |
author |
author2 |
Muñoz, Maria Óvilo, Cristina Fabbri, Maria Chiara Araújo, José Pedro Bovo, Samuele Čandek Potokar, Marjeta Charneca, Rui Crovetti, Alessandro Gallo, Maurizio García‑Casco, Juan María Karolyi, Danijel Kušec, Goran Martins, José Manuel Mercat, Marie‑José Pugliese, Carolina Quintanilla, Raquel Radović, Čedomir Razmaite, Violeta Ribani, Anisa Riquet, Juliet Savić, Radomir Schiavo, Giuseppina Škrlep, Martin Tinarelli, Silvia Usai, Graziano Zimmer, Christoph Fontanesi, Luca Bozzi, Riccardo |
author2_role |
author author author author author author author author author author author author author author author author author author author author author author author author author author author author |
dc.contributor.author.fl_str_mv |
Dadousis, Christos Muñoz, Maria Óvilo, Cristina Fabbri, Maria Chiara Araújo, José Pedro Bovo, Samuele Čandek Potokar, Marjeta Charneca, Rui Crovetti, Alessandro Gallo, Maurizio García‑Casco, Juan María Karolyi, Danijel Kušec, Goran Martins, José Manuel Mercat, Marie‑José Pugliese, Carolina Quintanilla, Raquel Radović, Čedomir Razmaite, Violeta Ribani, Anisa Riquet, Juliet Savić, Radomir Schiavo, Giuseppina Škrlep, Martin Tinarelli, Silvia Usai, Graziano Zimmer, Christoph Fontanesi, Luca Bozzi, Riccardo |
description |
Preserving diversity of indigenous pig (Sus scrofa) breeds is a key factor to (i) sustain the pork chain (both at local and global scales) including the production of high-quality branded products, (ii) enrich the animal biobanking and (iii) progress conservation policies. Single nucleotide polymorphism (SNP) chips offer the opportunity for whole-genome comparisons among individuals and breeds. Animals from twenty European local pigs breeds, reared in nine countries (Croatia: Black Slavonian, Turopolje; France: Basque, Gascon; Germany: Schwabisch-Hällisches Schwein; Italy: Apulo Calabrese, Casertana, Cinta Senese, Mora Romagnola, Nero Siciliano, Sarda; Lithuania: Indigenous Wattle, White Old Type; Portugal: Alentejana, Bísara; Serbia: Moravka, Swallow-Bellied Mangalitsa; Slovenia: Krškopolje pig; Spain: Iberian, Majorcan Black), and three commercial breeds (Duroc, Landrace and Large White) were sampled and genotyped with the GeneSeek Genomic Profiler (GGP) 70 K HD porcine genotyping chip. A dataset of 51 Wild Boars from nine countries was also added, summing up to 1186 pigs (~ 49 pigs/breed). The aim was to: (i) investigate individual admixture ancestries and (ii) assess breed traceability via discriminant analysis on principal components (DAPC). Albeit the mosaic of shared ancestries found for Nero Siciliano, Sarda and Moravka, admixture analysis indicated independent evolvement for the rest of the breeds. High prediction accuracy of DAPC mark SNP data as a reliable solution for the traceability of breed-specific pig products. |
publishDate |
2022 |
dc.date.none.fl_str_mv |
2022-07-20T14:14:45Z 2022-07-20 2022-05-05T00:00:00Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://hdl.handle.net/10174/32348 https://doi.org/Dadousis, C., Muñoz, M., Óvilo, C. et al. Admixture and breed traceability in European indigenous pig breeds and wild boar using genome-wide SNP data. Sci Rep 12, 7346 (2022). https://doi.org/10.1038/s41598-022-10698-8 http://hdl.handle.net/10174/32348 https://doi.org/10.1038/s41598-022-10698-8 |
url |
http://hdl.handle.net/10174/32348 https://doi.org/Dadousis, C., Muñoz, M., Óvilo, C. et al. Admixture and breed traceability in European indigenous pig breeds and wild boar using genome-wide SNP data. Sci Rep 12, 7346 (2022). https://doi.org/10.1038/s41598-022-10698-8 https://doi.org/10.1038/s41598-022-10698-8 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
https://www.nature.com/articles/s41598-022-10698-8 https://www.nature.com/articles/s41598-022-10698-8.pdf Departamento de Medicina Veterinária; Departamento de Zootecnia; Escola de Ciências e Tecnologia nd nd nd nd nd nd nd rmcc@uevora.pt nd nd nd nd nd jmartins@uevora.pt nd nd nd nd nd nd nd nd nd nd nd nd nd nd nd 207 |
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info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.publisher.none.fl_str_mv |
Springer Nature |
publisher.none.fl_str_mv |
Springer Nature |
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Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
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