survidm: An R package for Inference and Prediction in an Illness-Death Model

Detalhes bibliográficos
Autor(a) principal: Soutinho, Gustavo
Data de Publicação: 2021
Outros Autores: Sestelo, Marta, Machado, Luís Meira
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: https://hdl.handle.net/1822/79140
Resumo: Multi-state models are a useful way of describing a process in which an individual moves through a number of finite states in continuous time. The illness-death model plays a central role in the theory and practice of these models, describing the dynamics of healthy subjects who may move to an intermediate "diseased" state before entering into a terminal absorbing state. In these models, one important goal is the modeling of transition rates which is usually done by studying the relationship between covariates and disease evolution. However, biomedical researchers are also interested in reporting other interpretable results in a simple and summarized manner. These include estimates of predictive probabilities, such as the transition probabilities, occupation probabilities, cumulative incidence functions, and the sojourn time distributions. The development of survidm package has been motivated by recent contribution that provides answers to all these topics. An illustration of the software usage is included using real data.
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spelling survidm: An R package for Inference and Prediction in an Illness-Death Modelmultistate modelillness-deathmultistate regressiontransition probabilitiesCiências Naturais::MatemáticasScience & TechnologyMulti-state models are a useful way of describing a process in which an individual moves through a number of finite states in continuous time. The illness-death model plays a central role in the theory and practice of these models, describing the dynamics of healthy subjects who may move to an intermediate "diseased" state before entering into a terminal absorbing state. In these models, one important goal is the modeling of transition rates which is usually done by studying the relationship between covariates and disease evolution. However, biomedical researchers are also interested in reporting other interpretable results in a simple and summarized manner. These include estimates of predictive probabilities, such as the transition probabilities, occupation probabilities, cumulative incidence functions, and the sojourn time distributions. The development of survidm package has been motivated by recent contribution that provides answers to all these topics. An illustration of the software usage is included using real data.This research was financed by Portuguese Funds through FCT - "Fundação para a Ciência e a Tecnolo gia", within the research grant PD/BD/142887/2018. Luís Meira-Machado acknowledges financial support from the Spanish Ministry of Economy and Competitiveness MINECO through project MTM2017-82379-R funded by (AEI/FEDER, UE) and acronym "AFTERAM".R Foundation for Statistical ComputingUniversidade do MinhoSoutinho, GustavoSestelo, MartaMachado, Luís Meira20212021-01-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttps://hdl.handle.net/1822/79140engSoutinho, G., Sestelo, M., & Meira-Machado, L. (2021). survidm: An R package for Inference and Prediction in an Illness-Death Model. The R Journal. The R Foundation. http://doi.org/10.32614/rj-2021-0702073-485910.32614/RJ-2021-070https://journal.r-project.org/archive/2021/RJ-2021-070/index.htmlinfo:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-07-21T12:09:11Zoai:repositorium.sdum.uminho.pt:1822/79140Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T19:00:32.488595Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv survidm: An R package for Inference and Prediction in an Illness-Death Model
title survidm: An R package for Inference and Prediction in an Illness-Death Model
spellingShingle survidm: An R package for Inference and Prediction in an Illness-Death Model
Soutinho, Gustavo
multistate model
illness-death
multistate regression
transition probabilities
Ciências Naturais::Matemáticas
Science & Technology
title_short survidm: An R package for Inference and Prediction in an Illness-Death Model
title_full survidm: An R package for Inference and Prediction in an Illness-Death Model
title_fullStr survidm: An R package for Inference and Prediction in an Illness-Death Model
title_full_unstemmed survidm: An R package for Inference and Prediction in an Illness-Death Model
title_sort survidm: An R package for Inference and Prediction in an Illness-Death Model
author Soutinho, Gustavo
author_facet Soutinho, Gustavo
Sestelo, Marta
Machado, Luís Meira
author_role author
author2 Sestelo, Marta
Machado, Luís Meira
author2_role author
author
dc.contributor.none.fl_str_mv Universidade do Minho
dc.contributor.author.fl_str_mv Soutinho, Gustavo
Sestelo, Marta
Machado, Luís Meira
dc.subject.por.fl_str_mv multistate model
illness-death
multistate regression
transition probabilities
Ciências Naturais::Matemáticas
Science & Technology
topic multistate model
illness-death
multistate regression
transition probabilities
Ciências Naturais::Matemáticas
Science & Technology
description Multi-state models are a useful way of describing a process in which an individual moves through a number of finite states in continuous time. The illness-death model plays a central role in the theory and practice of these models, describing the dynamics of healthy subjects who may move to an intermediate "diseased" state before entering into a terminal absorbing state. In these models, one important goal is the modeling of transition rates which is usually done by studying the relationship between covariates and disease evolution. However, biomedical researchers are also interested in reporting other interpretable results in a simple and summarized manner. These include estimates of predictive probabilities, such as the transition probabilities, occupation probabilities, cumulative incidence functions, and the sojourn time distributions. The development of survidm package has been motivated by recent contribution that provides answers to all these topics. An illustration of the software usage is included using real data.
publishDate 2021
dc.date.none.fl_str_mv 2021
2021-01-01T00:00:00Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://hdl.handle.net/1822/79140
url https://hdl.handle.net/1822/79140
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Soutinho, G., Sestelo, M., & Meira-Machado, L. (2021). survidm: An R package for Inference and Prediction in an Illness-Death Model. The R Journal. The R Foundation. http://doi.org/10.32614/rj-2021-070
2073-4859
10.32614/RJ-2021-070
https://journal.r-project.org/archive/2021/RJ-2021-070/index.html
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv R Foundation for Statistical Computing
publisher.none.fl_str_mv R Foundation for Statistical Computing
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron:RCAAP
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institution RCAAP
reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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