Miniaturized microscale solid-phase extraction-based module for highly efficient DNA extraction and purification from grapevine samples

Detalhes bibliográficos
Autor(a) principal: Teixeira, Carla
Data de Publicação: 2023
Outros Autores: Ipatov, Andrey, Carvalho, Joana, Purwidyantri, Agnes, Fontes, Natacha, Prado, Marta
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: https://hdl.handle.net/1822/86669
Resumo: Several developments over the last few years are being directed toward improving DNA-based analysis to simplify, miniaturize, and reduce the time and cost of analysis, with the objective to allow its use in decentralized settings. One of the most interesting fields is DNA extraction and purification, a key step for ensuring good analytical performance. In this sense, microscale solid phase extraction (μSPE) offers paramount advantages for an improved DNA yield. In this work, we have developed a miniaturized module for DNA purification based on μSPE using a borosilicate glass microfiber filter as the solid phase. We also established a protocol for highly efficient DNA purification from vegetable samples, including leaves and grapes from four different varieties from the PDO Douro and two varieties from the Minho wine regions. The protocol demonstrated excellent performance when compared with a commercial kit with a DNA recovery yield of around 50%.
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spelling Miniaturized microscale solid-phase extraction-based module for highly efficient DNA extraction and purification from grapevine samplesBeverageExtractionGeneticsPlant derived foodPurificationSeveral developments over the last few years are being directed toward improving DNA-based analysis to simplify, miniaturize, and reduce the time and cost of analysis, with the objective to allow its use in decentralized settings. One of the most interesting fields is DNA extraction and purification, a key step for ensuring good analytical performance. In this sense, microscale solid phase extraction (μSPE) offers paramount advantages for an improved DNA yield. In this work, we have developed a miniaturized module for DNA purification based on μSPE using a borosilicate glass microfiber filter as the solid phase. We also established a protocol for highly efficient DNA purification from vegetable samples, including leaves and grapes from four different varieties from the PDO Douro and two varieties from the Minho wine regions. The protocol demonstrated excellent performance when compared with a commercial kit with a DNA recovery yield of around 50%.This work was funded by PORTGRAPHEControl of Port and Douro Wines authenticity using graphene DNA sensors project cofunded by the Fundação para a Ciencia e a Tecnologia (FCT), Portugal (PTDC/BIA-MOL/31069/2017), and the ERDF through COMPETE2020 (POCI-01- 0145-FEDER-031069).info:eu-repo/semantics/publishedVersionAmerican Chemical SocietyUniversidade do MinhoTeixeira, CarlaIpatov, AndreyCarvalho, JoanaPurwidyantri, AgnesFontes, NatachaPrado, Marta20232023-01-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttps://hdl.handle.net/1822/86669engTeixeira, Carla; Ipatov, Andrey; Carvalho, Joana; Purwidyantri, Agnes; Fontes, Natacha; Prado, Marta, Miniaturized microscale solid-phase extraction-based module for highly efficient DNA extraction and purification from grapevine samples. ACS Omega, 8(35), 31738-31746, 20232470-134310.1021/acsomega.3c02717https://pubs.acs.org/journal/acsodfinfo:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-11-11T01:16:34Zoai:repositorium.sdum.uminho.pt:1822/86669Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T20:33:32.813301Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Miniaturized microscale solid-phase extraction-based module for highly efficient DNA extraction and purification from grapevine samples
title Miniaturized microscale solid-phase extraction-based module for highly efficient DNA extraction and purification from grapevine samples
spellingShingle Miniaturized microscale solid-phase extraction-based module for highly efficient DNA extraction and purification from grapevine samples
Teixeira, Carla
Beverage
Extraction
Genetics
Plant derived food
Purification
title_short Miniaturized microscale solid-phase extraction-based module for highly efficient DNA extraction and purification from grapevine samples
title_full Miniaturized microscale solid-phase extraction-based module for highly efficient DNA extraction and purification from grapevine samples
title_fullStr Miniaturized microscale solid-phase extraction-based module for highly efficient DNA extraction and purification from grapevine samples
title_full_unstemmed Miniaturized microscale solid-phase extraction-based module for highly efficient DNA extraction and purification from grapevine samples
title_sort Miniaturized microscale solid-phase extraction-based module for highly efficient DNA extraction and purification from grapevine samples
author Teixeira, Carla
author_facet Teixeira, Carla
Ipatov, Andrey
Carvalho, Joana
Purwidyantri, Agnes
Fontes, Natacha
Prado, Marta
author_role author
author2 Ipatov, Andrey
Carvalho, Joana
Purwidyantri, Agnes
Fontes, Natacha
Prado, Marta
author2_role author
author
author
author
author
dc.contributor.none.fl_str_mv Universidade do Minho
dc.contributor.author.fl_str_mv Teixeira, Carla
Ipatov, Andrey
Carvalho, Joana
Purwidyantri, Agnes
Fontes, Natacha
Prado, Marta
dc.subject.por.fl_str_mv Beverage
Extraction
Genetics
Plant derived food
Purification
topic Beverage
Extraction
Genetics
Plant derived food
Purification
description Several developments over the last few years are being directed toward improving DNA-based analysis to simplify, miniaturize, and reduce the time and cost of analysis, with the objective to allow its use in decentralized settings. One of the most interesting fields is DNA extraction and purification, a key step for ensuring good analytical performance. In this sense, microscale solid phase extraction (μSPE) offers paramount advantages for an improved DNA yield. In this work, we have developed a miniaturized module for DNA purification based on μSPE using a borosilicate glass microfiber filter as the solid phase. We also established a protocol for highly efficient DNA purification from vegetable samples, including leaves and grapes from four different varieties from the PDO Douro and two varieties from the Minho wine regions. The protocol demonstrated excellent performance when compared with a commercial kit with a DNA recovery yield of around 50%.
publishDate 2023
dc.date.none.fl_str_mv 2023
2023-01-01T00:00:00Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv https://hdl.handle.net/1822/86669
url https://hdl.handle.net/1822/86669
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv Teixeira, Carla; Ipatov, Andrey; Carvalho, Joana; Purwidyantri, Agnes; Fontes, Natacha; Prado, Marta, Miniaturized microscale solid-phase extraction-based module for highly efficient DNA extraction and purification from grapevine samples. ACS Omega, 8(35), 31738-31746, 2023
2470-1343
10.1021/acsomega.3c02717
https://pubs.acs.org/journal/acsodf
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv American Chemical Society
publisher.none.fl_str_mv American Chemical Society
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron:RCAAP
instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron_str RCAAP
institution RCAAP
reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
repository.mail.fl_str_mv
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