Miniaturized microscale solid-phase extraction-based module for highly efficient DNA extraction and purification from grapevine samples
Autor(a) principal: | |
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Data de Publicação: | 2023 |
Outros Autores: | , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
Texto Completo: | https://hdl.handle.net/1822/86669 |
Resumo: | Several developments over the last few years are being directed toward improving DNA-based analysis to simplify, miniaturize, and reduce the time and cost of analysis, with the objective to allow its use in decentralized settings. One of the most interesting fields is DNA extraction and purification, a key step for ensuring good analytical performance. In this sense, microscale solid phase extraction (μSPE) offers paramount advantages for an improved DNA yield. In this work, we have developed a miniaturized module for DNA purification based on μSPE using a borosilicate glass microfiber filter as the solid phase. We also established a protocol for highly efficient DNA purification from vegetable samples, including leaves and grapes from four different varieties from the PDO Douro and two varieties from the Minho wine regions. The protocol demonstrated excellent performance when compared with a commercial kit with a DNA recovery yield of around 50%. |
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Miniaturized microscale solid-phase extraction-based module for highly efficient DNA extraction and purification from grapevine samplesBeverageExtractionGeneticsPlant derived foodPurificationSeveral developments over the last few years are being directed toward improving DNA-based analysis to simplify, miniaturize, and reduce the time and cost of analysis, with the objective to allow its use in decentralized settings. One of the most interesting fields is DNA extraction and purification, a key step for ensuring good analytical performance. In this sense, microscale solid phase extraction (μSPE) offers paramount advantages for an improved DNA yield. In this work, we have developed a miniaturized module for DNA purification based on μSPE using a borosilicate glass microfiber filter as the solid phase. We also established a protocol for highly efficient DNA purification from vegetable samples, including leaves and grapes from four different varieties from the PDO Douro and two varieties from the Minho wine regions. The protocol demonstrated excellent performance when compared with a commercial kit with a DNA recovery yield of around 50%.This work was funded by PORTGRAPHEControl of Port and Douro Wines authenticity using graphene DNA sensors project cofunded by the Fundação para a Ciencia e a Tecnologia (FCT), Portugal (PTDC/BIA-MOL/31069/2017), and the ERDF through COMPETE2020 (POCI-01- 0145-FEDER-031069).info:eu-repo/semantics/publishedVersionAmerican Chemical SocietyUniversidade do MinhoTeixeira, CarlaIpatov, AndreyCarvalho, JoanaPurwidyantri, AgnesFontes, NatachaPrado, Marta20232023-01-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttps://hdl.handle.net/1822/86669engTeixeira, Carla; Ipatov, Andrey; Carvalho, Joana; Purwidyantri, Agnes; Fontes, Natacha; Prado, Marta, Miniaturized microscale solid-phase extraction-based module for highly efficient DNA extraction and purification from grapevine samples. ACS Omega, 8(35), 31738-31746, 20232470-134310.1021/acsomega.3c02717https://pubs.acs.org/journal/acsodfinfo:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-11-11T01:16:34Zoai:repositorium.sdum.uminho.pt:1822/86669Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T20:33:32.813301Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse |
dc.title.none.fl_str_mv |
Miniaturized microscale solid-phase extraction-based module for highly efficient DNA extraction and purification from grapevine samples |
title |
Miniaturized microscale solid-phase extraction-based module for highly efficient DNA extraction and purification from grapevine samples |
spellingShingle |
Miniaturized microscale solid-phase extraction-based module for highly efficient DNA extraction and purification from grapevine samples Teixeira, Carla Beverage Extraction Genetics Plant derived food Purification |
title_short |
Miniaturized microscale solid-phase extraction-based module for highly efficient DNA extraction and purification from grapevine samples |
title_full |
Miniaturized microscale solid-phase extraction-based module for highly efficient DNA extraction and purification from grapevine samples |
title_fullStr |
Miniaturized microscale solid-phase extraction-based module for highly efficient DNA extraction and purification from grapevine samples |
title_full_unstemmed |
Miniaturized microscale solid-phase extraction-based module for highly efficient DNA extraction and purification from grapevine samples |
title_sort |
Miniaturized microscale solid-phase extraction-based module for highly efficient DNA extraction and purification from grapevine samples |
author |
Teixeira, Carla |
author_facet |
Teixeira, Carla Ipatov, Andrey Carvalho, Joana Purwidyantri, Agnes Fontes, Natacha Prado, Marta |
author_role |
author |
author2 |
Ipatov, Andrey Carvalho, Joana Purwidyantri, Agnes Fontes, Natacha Prado, Marta |
author2_role |
author author author author author |
dc.contributor.none.fl_str_mv |
Universidade do Minho |
dc.contributor.author.fl_str_mv |
Teixeira, Carla Ipatov, Andrey Carvalho, Joana Purwidyantri, Agnes Fontes, Natacha Prado, Marta |
dc.subject.por.fl_str_mv |
Beverage Extraction Genetics Plant derived food Purification |
topic |
Beverage Extraction Genetics Plant derived food Purification |
description |
Several developments over the last few years are being directed toward improving DNA-based analysis to simplify, miniaturize, and reduce the time and cost of analysis, with the objective to allow its use in decentralized settings. One of the most interesting fields is DNA extraction and purification, a key step for ensuring good analytical performance. In this sense, microscale solid phase extraction (μSPE) offers paramount advantages for an improved DNA yield. In this work, we have developed a miniaturized module for DNA purification based on μSPE using a borosilicate glass microfiber filter as the solid phase. We also established a protocol for highly efficient DNA purification from vegetable samples, including leaves and grapes from four different varieties from the PDO Douro and two varieties from the Minho wine regions. The protocol demonstrated excellent performance when compared with a commercial kit with a DNA recovery yield of around 50%. |
publishDate |
2023 |
dc.date.none.fl_str_mv |
2023 2023-01-01T00:00:00Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
https://hdl.handle.net/1822/86669 |
url |
https://hdl.handle.net/1822/86669 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
Teixeira, Carla; Ipatov, Andrey; Carvalho, Joana; Purwidyantri, Agnes; Fontes, Natacha; Prado, Marta, Miniaturized microscale solid-phase extraction-based module for highly efficient DNA extraction and purification from grapevine samples. ACS Omega, 8(35), 31738-31746, 2023 2470-1343 10.1021/acsomega.3c02717 https://pubs.acs.org/journal/acsodf |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
dc.publisher.none.fl_str_mv |
American Chemical Society |
publisher.none.fl_str_mv |
American Chemical Society |
dc.source.none.fl_str_mv |
reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação instacron:RCAAP |
instname_str |
Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
instacron_str |
RCAAP |
institution |
RCAAP |
reponame_str |
Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
collection |
Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
repository.name.fl_str_mv |
Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
repository.mail.fl_str_mv |
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1799133601011335168 |