UniHI 7: an enhanced database for retrieval and interactive analysis of human molecular interaction networks

Detalhes bibliográficos
Autor(a) principal: Kalathur, Ravi Kiran Reddy
Data de Publicação: 2014
Outros Autores: Pinto, Jose Pedro, Hernandez-Prieto, Miguel A., Machado, Rui, Almeida, Dulce, Chaurasia, Gautam, Futschik, Matthias E.
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10400.1/11370
Resumo: Unified Human Interactome (UniHI) (http://www.unihi.org) is a database for retrieval, analysis and visualization of human molecular interaction networks. Its primary aim is to provide a comprehensive and easy-to-use platform for network-based investigations to a wide community of researchers in biology and medicine. Here, we describe a major update (version 7) of the database previously featured in NAR Database Issue. UniHI 7 currently includes almost 350 000 molecular interactions between genes, proteins and drugs, as well as numerous other types of data such as gene expression and functional annotation. Multiple options for interactive filtering and highlighting of proteins can be employed to obtain more reliable and specific network structures. Expression and other genomic data can be uploaded by the user to examine local network structures. Additional built-in tools enable ready identification of known drug targets, as well as of biological processes, phenotypes and pathways enriched with network proteins. A distinctive feature of UniHI 7 is its user-friendly interface designed to be utilized in an intuitive manner, enabling researchers less acquainted with network analysis to perform state-of-the-art network-based investigations.
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spelling UniHI 7: an enhanced database for retrieval and interactive analysis of human molecular interaction networksProtein interaction network2013 UpdateBiologyIntegrationWebVisualizationResourcesDiseaseServerGenesUnified Human Interactome (UniHI) (http://www.unihi.org) is a database for retrieval, analysis and visualization of human molecular interaction networks. Its primary aim is to provide a comprehensive and easy-to-use platform for network-based investigations to a wide community of researchers in biology and medicine. Here, we describe a major update (version 7) of the database previously featured in NAR Database Issue. UniHI 7 currently includes almost 350 000 molecular interactions between genes, proteins and drugs, as well as numerous other types of data such as gene expression and functional annotation. Multiple options for interactive filtering and highlighting of proteins can be employed to obtain more reliable and specific network structures. Expression and other genomic data can be uploaded by the user to examine local network structures. Additional built-in tools enable ready identification of known drug targets, as well as of biological processes, phenotypes and pathways enriched with network proteins. A distinctive feature of UniHI 7 is its user-friendly interface designed to be utilized in an intuitive manner, enabling researchers less acquainted with network analysis to perform state-of-the-art network-based investigations.Portuguese Fundacao para a Ciencia e a Tecnologia (FCT) [PTDC/BIA-GEN/116519/2010]; CHDI Foundation [A-2666]; FCT [SFRH/BPD/70718/2010, PTDC/BIA-BCM/117975/2010]; Portuguese Fundacao para a Ciencia e a Tecnologia [PTDC/BIA-GEN/116519/2010]Oxford University PressSapientiaKalathur, Ravi Kiran ReddyPinto, Jose PedroHernandez-Prieto, Miguel A.Machado, RuiAlmeida, DulceChaurasia, GautamFutschik, Matthias E.2018-12-07T14:53:08Z2014-012014-01-01T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10400.1/11370eng0305-104810.1093/nar/gkt1100info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-07-24T10:23:10Zoai:sapientia.ualg.pt:10400.1/11370Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T20:02:53.568727Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv UniHI 7: an enhanced database for retrieval and interactive analysis of human molecular interaction networks
title UniHI 7: an enhanced database for retrieval and interactive analysis of human molecular interaction networks
spellingShingle UniHI 7: an enhanced database for retrieval and interactive analysis of human molecular interaction networks
Kalathur, Ravi Kiran Reddy
Protein interaction network
2013 Update
Biology
Integration
Web
Visualization
Resources
Disease
Server
Genes
title_short UniHI 7: an enhanced database for retrieval and interactive analysis of human molecular interaction networks
title_full UniHI 7: an enhanced database for retrieval and interactive analysis of human molecular interaction networks
title_fullStr UniHI 7: an enhanced database for retrieval and interactive analysis of human molecular interaction networks
title_full_unstemmed UniHI 7: an enhanced database for retrieval and interactive analysis of human molecular interaction networks
title_sort UniHI 7: an enhanced database for retrieval and interactive analysis of human molecular interaction networks
author Kalathur, Ravi Kiran Reddy
author_facet Kalathur, Ravi Kiran Reddy
Pinto, Jose Pedro
Hernandez-Prieto, Miguel A.
Machado, Rui
Almeida, Dulce
Chaurasia, Gautam
Futschik, Matthias E.
author_role author
author2 Pinto, Jose Pedro
Hernandez-Prieto, Miguel A.
Machado, Rui
Almeida, Dulce
Chaurasia, Gautam
Futschik, Matthias E.
author2_role author
author
author
author
author
author
dc.contributor.none.fl_str_mv Sapientia
dc.contributor.author.fl_str_mv Kalathur, Ravi Kiran Reddy
Pinto, Jose Pedro
Hernandez-Prieto, Miguel A.
Machado, Rui
Almeida, Dulce
Chaurasia, Gautam
Futschik, Matthias E.
dc.subject.por.fl_str_mv Protein interaction network
2013 Update
Biology
Integration
Web
Visualization
Resources
Disease
Server
Genes
topic Protein interaction network
2013 Update
Biology
Integration
Web
Visualization
Resources
Disease
Server
Genes
description Unified Human Interactome (UniHI) (http://www.unihi.org) is a database for retrieval, analysis and visualization of human molecular interaction networks. Its primary aim is to provide a comprehensive and easy-to-use platform for network-based investigations to a wide community of researchers in biology and medicine. Here, we describe a major update (version 7) of the database previously featured in NAR Database Issue. UniHI 7 currently includes almost 350 000 molecular interactions between genes, proteins and drugs, as well as numerous other types of data such as gene expression and functional annotation. Multiple options for interactive filtering and highlighting of proteins can be employed to obtain more reliable and specific network structures. Expression and other genomic data can be uploaded by the user to examine local network structures. Additional built-in tools enable ready identification of known drug targets, as well as of biological processes, phenotypes and pathways enriched with network proteins. A distinctive feature of UniHI 7 is its user-friendly interface designed to be utilized in an intuitive manner, enabling researchers less acquainted with network analysis to perform state-of-the-art network-based investigations.
publishDate 2014
dc.date.none.fl_str_mv 2014-01
2014-01-01T00:00:00Z
2018-12-07T14:53:08Z
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10400.1/11370
url http://hdl.handle.net/10400.1/11370
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 0305-1048
10.1093/nar/gkt1100
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv application/pdf
dc.publisher.none.fl_str_mv Oxford University Press
publisher.none.fl_str_mv Oxford University Press
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron_str RCAAP
institution RCAAP
reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
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