Genetic diversity and drug resistance of HIV-1 among infected pregnant women newly diagnosed in Luanda, Angola
Autor(a) principal: | |
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Data de Publicação: | 2019 |
Outros Autores: | , , , , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
Texto Completo: | http://hdl.handle.net/10362/96168 |
Resumo: | Monitoring genetic diversity and drug resistance mutations (DRMs) is critical for understanding HIV epidemiology. Here, we report HIV-1 genetic diversity and DRMs in blood samples from 42 HIV-positive pregnant women naive to antiretroviral therapy (ART), in Luanda. The samples were subjected to nested-PCR, followed by sequencing of HIV-1 pol gene, targeting the protease and reverse transcriptase fragments. HIV-1 diversity was analyzed using the REGA HIV-1 subtyping tool and DRMs were identified using the Calibrated Population Resistance tool. A total of 34 sequences were obtained. The data revealed wide HIV-1 subtypes heterogeneity, with subtype C (38%, 13/34) the most frequent, followed by the subtypes F1 (18%, 6/34), A1 (9%, 3/34), G (9%, 3/34), D (6%, 2/34) and H (3%, 1/34). In addition, recombinants strains were detected, with CRF02_AG (6%, 2/34) the most frequent, followed by CRF37_cpx, F1/C, A1/G and H/G, all with 3% (1/34). A total of 6/34 (18%) of the sequences presented DRMs. The non-nucleoside reverse transcriptase inhibitors presented 15% (5/34) of resistance. Moreover, 1/34 (3%) sequence presented resistance against both non-nucleoside reverse transcriptase inhibitors and nucleoside reverse transcriptase inhibitors, simultaneously. Despite the small sample size, our results suggest the need to update currently used ART regimens. Surveillance of HIV-1 subtypes and DRMs are necessary to understand HIV epidemiology and to guide modification of ART guidelines in Angola. |
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Genetic diversity and drug resistance of HIV-1 among infected pregnant women newly diagnosed in Luanda, AngolaAdolescentAdultAngolaAnti-HIV Agents/pharmacologyCross-Sectional StudiesDrug Resistance, ViralFemaleGenetic VariationGenotyping TechniquesHIV Infections/diagnosisHIV-1/classificationHumansPhylogenyPopulation SurveillancePregnancyPregnancy Complications, Infectious/virologySample SizeSequence Analysis, RNA/methodsYoung Adultpol Gene Products, Human Immunodeficiency Virus/geneticsSDG 3 - Good Health and Well-beingMonitoring genetic diversity and drug resistance mutations (DRMs) is critical for understanding HIV epidemiology. Here, we report HIV-1 genetic diversity and DRMs in blood samples from 42 HIV-positive pregnant women naive to antiretroviral therapy (ART), in Luanda. The samples were subjected to nested-PCR, followed by sequencing of HIV-1 pol gene, targeting the protease and reverse transcriptase fragments. HIV-1 diversity was analyzed using the REGA HIV-1 subtyping tool and DRMs were identified using the Calibrated Population Resistance tool. A total of 34 sequences were obtained. The data revealed wide HIV-1 subtypes heterogeneity, with subtype C (38%, 13/34) the most frequent, followed by the subtypes F1 (18%, 6/34), A1 (9%, 3/34), G (9%, 3/34), D (6%, 2/34) and H (3%, 1/34). In addition, recombinants strains were detected, with CRF02_AG (6%, 2/34) the most frequent, followed by CRF37_cpx, F1/C, A1/G and H/G, all with 3% (1/34). A total of 6/34 (18%) of the sequences presented DRMs. The non-nucleoside reverse transcriptase inhibitors presented 15% (5/34) of resistance. Moreover, 1/34 (3%) sequence presented resistance against both non-nucleoside reverse transcriptase inhibitors and nucleoside reverse transcriptase inhibitors, simultaneously. Despite the small sample size, our results suggest the need to update currently used ART regimens. Surveillance of HIV-1 subtypes and DRMs are necessary to understand HIV epidemiology and to guide modification of ART guidelines in Angola.NOVA Medical School|Faculdade de Ciências Médicas (NMS|FCM)RUNSebastião, Cruz SNeto, Zoraimade Jesus, Carlos SMirandela, MarinelaJandondo, DomingosCouto-Fernandez, José CTanuri, AmilcarMorais, JoanaBrito, Miguel2020-04-14T22:34:58Z2019-11-262019-11-26T00:00:00Zinfo:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articleapplication/pdfhttp://hdl.handle.net/10362/96168eng1932-6203PURE: 17643399https://doi.org/10.1371/journal.pone.0225251info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2024-03-11T04:43:53Zoai:run.unl.pt:10362/96168Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-20T03:38:29.584673Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse |
dc.title.none.fl_str_mv |
Genetic diversity and drug resistance of HIV-1 among infected pregnant women newly diagnosed in Luanda, Angola |
title |
Genetic diversity and drug resistance of HIV-1 among infected pregnant women newly diagnosed in Luanda, Angola |
spellingShingle |
Genetic diversity and drug resistance of HIV-1 among infected pregnant women newly diagnosed in Luanda, Angola Sebastião, Cruz S Adolescent Adult Angola Anti-HIV Agents/pharmacology Cross-Sectional Studies Drug Resistance, Viral Female Genetic Variation Genotyping Techniques HIV Infections/diagnosis HIV-1/classification Humans Phylogeny Population Surveillance Pregnancy Pregnancy Complications, Infectious/virology Sample Size Sequence Analysis, RNA/methods Young Adult pol Gene Products, Human Immunodeficiency Virus/genetics SDG 3 - Good Health and Well-being |
title_short |
Genetic diversity and drug resistance of HIV-1 among infected pregnant women newly diagnosed in Luanda, Angola |
title_full |
Genetic diversity and drug resistance of HIV-1 among infected pregnant women newly diagnosed in Luanda, Angola |
title_fullStr |
Genetic diversity and drug resistance of HIV-1 among infected pregnant women newly diagnosed in Luanda, Angola |
title_full_unstemmed |
Genetic diversity and drug resistance of HIV-1 among infected pregnant women newly diagnosed in Luanda, Angola |
title_sort |
Genetic diversity and drug resistance of HIV-1 among infected pregnant women newly diagnosed in Luanda, Angola |
author |
Sebastião, Cruz S |
author_facet |
Sebastião, Cruz S Neto, Zoraima de Jesus, Carlos S Mirandela, Marinela Jandondo, Domingos Couto-Fernandez, José C Tanuri, Amilcar Morais, Joana Brito, Miguel |
author_role |
author |
author2 |
Neto, Zoraima de Jesus, Carlos S Mirandela, Marinela Jandondo, Domingos Couto-Fernandez, José C Tanuri, Amilcar Morais, Joana Brito, Miguel |
author2_role |
author author author author author author author author |
dc.contributor.none.fl_str_mv |
NOVA Medical School|Faculdade de Ciências Médicas (NMS|FCM) RUN |
dc.contributor.author.fl_str_mv |
Sebastião, Cruz S Neto, Zoraima de Jesus, Carlos S Mirandela, Marinela Jandondo, Domingos Couto-Fernandez, José C Tanuri, Amilcar Morais, Joana Brito, Miguel |
dc.subject.por.fl_str_mv |
Adolescent Adult Angola Anti-HIV Agents/pharmacology Cross-Sectional Studies Drug Resistance, Viral Female Genetic Variation Genotyping Techniques HIV Infections/diagnosis HIV-1/classification Humans Phylogeny Population Surveillance Pregnancy Pregnancy Complications, Infectious/virology Sample Size Sequence Analysis, RNA/methods Young Adult pol Gene Products, Human Immunodeficiency Virus/genetics SDG 3 - Good Health and Well-being |
topic |
Adolescent Adult Angola Anti-HIV Agents/pharmacology Cross-Sectional Studies Drug Resistance, Viral Female Genetic Variation Genotyping Techniques HIV Infections/diagnosis HIV-1/classification Humans Phylogeny Population Surveillance Pregnancy Pregnancy Complications, Infectious/virology Sample Size Sequence Analysis, RNA/methods Young Adult pol Gene Products, Human Immunodeficiency Virus/genetics SDG 3 - Good Health and Well-being |
description |
Monitoring genetic diversity and drug resistance mutations (DRMs) is critical for understanding HIV epidemiology. Here, we report HIV-1 genetic diversity and DRMs in blood samples from 42 HIV-positive pregnant women naive to antiretroviral therapy (ART), in Luanda. The samples were subjected to nested-PCR, followed by sequencing of HIV-1 pol gene, targeting the protease and reverse transcriptase fragments. HIV-1 diversity was analyzed using the REGA HIV-1 subtyping tool and DRMs were identified using the Calibrated Population Resistance tool. A total of 34 sequences were obtained. The data revealed wide HIV-1 subtypes heterogeneity, with subtype C (38%, 13/34) the most frequent, followed by the subtypes F1 (18%, 6/34), A1 (9%, 3/34), G (9%, 3/34), D (6%, 2/34) and H (3%, 1/34). In addition, recombinants strains were detected, with CRF02_AG (6%, 2/34) the most frequent, followed by CRF37_cpx, F1/C, A1/G and H/G, all with 3% (1/34). A total of 6/34 (18%) of the sequences presented DRMs. The non-nucleoside reverse transcriptase inhibitors presented 15% (5/34) of resistance. Moreover, 1/34 (3%) sequence presented resistance against both non-nucleoside reverse transcriptase inhibitors and nucleoside reverse transcriptase inhibitors, simultaneously. Despite the small sample size, our results suggest the need to update currently used ART regimens. Surveillance of HIV-1 subtypes and DRMs are necessary to understand HIV epidemiology and to guide modification of ART guidelines in Angola. |
publishDate |
2019 |
dc.date.none.fl_str_mv |
2019-11-26 2019-11-26T00:00:00Z 2020-04-14T22:34:58Z |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://hdl.handle.net/10362/96168 |
url |
http://hdl.handle.net/10362/96168 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
1932-6203 PURE: 17643399 https://doi.org/10.1371/journal.pone.0225251 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
application/pdf |
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RCAAP |
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Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
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Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
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Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
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