Draft genome sequence of the cellulolytic endophyte Chitinophaga costaii A37T2T
Autor(a) principal: | |
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Data de Publicação: | 2017 |
Outros Autores: | , , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
Texto Completo: | http://hdl.handle.net/10316/108393 https://doi.org/10.1186/s40793-017-0262-2 |
Resumo: | Here we report the draft genome sequence of Chitinophaga costai A37T2T (=CIP 110584T, =LMG 27458T), which was isolated from the endophytic community of Pinus pinaster tree. The total genome size of C. costaii A37T2T is 5.07 Mbp, containing 4204 coding sequences. Strain A37T2T encoded multiple genes likely involved in cellulolytic, chitinolytic and lipolytic activities. This genome showed 1145 unique genes assigned into 109 Cluster of Orthologous Groups in comparison with the complete genome of C. pinensis DSM 2588T. The genomic information suggests the potential of the strain A37T2T to interact with the plant metabolism. As there are only a few bacterial genomes related to Pine Wilt Disease, this work provides a contribution to the field. |
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Draft genome sequence of the cellulolytic endophyte Chitinophaga costaii A37T2TChitinophaga costaii A37T2CellulaseChitinaseGenome sequenceHere we report the draft genome sequence of Chitinophaga costai A37T2T (=CIP 110584T, =LMG 27458T), which was isolated from the endophytic community of Pinus pinaster tree. The total genome size of C. costaii A37T2T is 5.07 Mbp, containing 4204 coding sequences. Strain A37T2T encoded multiple genes likely involved in cellulolytic, chitinolytic and lipolytic activities. This genome showed 1145 unique genes assigned into 109 Cluster of Orthologous Groups in comparison with the complete genome of C. pinensis DSM 2588T. The genomic information suggests the potential of the strain A37T2T to interact with the plant metabolism. As there are only a few bacterial genomes related to Pine Wilt Disease, this work provides a contribution to the field.Springer Nature2017info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://hdl.handle.net/10316/108393http://hdl.handle.net/10316/108393https://doi.org/10.1186/s40793-017-0262-2eng1944-3277Proença, Diogo N.Whitman, William B.Shapiro, NicoleWoyke, TanjaKyrpides, Nikos C.Morais, Paula V.info:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-08-28T11:25:53Zoai:estudogeral.uc.pt:10316/108393Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T21:24:41.600424Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse |
dc.title.none.fl_str_mv |
Draft genome sequence of the cellulolytic endophyte Chitinophaga costaii A37T2T |
title |
Draft genome sequence of the cellulolytic endophyte Chitinophaga costaii A37T2T |
spellingShingle |
Draft genome sequence of the cellulolytic endophyte Chitinophaga costaii A37T2T Proença, Diogo N. Chitinophaga costaii A37T2 Cellulase Chitinase Genome sequence |
title_short |
Draft genome sequence of the cellulolytic endophyte Chitinophaga costaii A37T2T |
title_full |
Draft genome sequence of the cellulolytic endophyte Chitinophaga costaii A37T2T |
title_fullStr |
Draft genome sequence of the cellulolytic endophyte Chitinophaga costaii A37T2T |
title_full_unstemmed |
Draft genome sequence of the cellulolytic endophyte Chitinophaga costaii A37T2T |
title_sort |
Draft genome sequence of the cellulolytic endophyte Chitinophaga costaii A37T2T |
author |
Proença, Diogo N. |
author_facet |
Proença, Diogo N. Whitman, William B. Shapiro, Nicole Woyke, Tanja Kyrpides, Nikos C. Morais, Paula V. |
author_role |
author |
author2 |
Whitman, William B. Shapiro, Nicole Woyke, Tanja Kyrpides, Nikos C. Morais, Paula V. |
author2_role |
author author author author author |
dc.contributor.author.fl_str_mv |
Proença, Diogo N. Whitman, William B. Shapiro, Nicole Woyke, Tanja Kyrpides, Nikos C. Morais, Paula V. |
dc.subject.por.fl_str_mv |
Chitinophaga costaii A37T2 Cellulase Chitinase Genome sequence |
topic |
Chitinophaga costaii A37T2 Cellulase Chitinase Genome sequence |
description |
Here we report the draft genome sequence of Chitinophaga costai A37T2T (=CIP 110584T, =LMG 27458T), which was isolated from the endophytic community of Pinus pinaster tree. The total genome size of C. costaii A37T2T is 5.07 Mbp, containing 4204 coding sequences. Strain A37T2T encoded multiple genes likely involved in cellulolytic, chitinolytic and lipolytic activities. This genome showed 1145 unique genes assigned into 109 Cluster of Orthologous Groups in comparison with the complete genome of C. pinensis DSM 2588T. The genomic information suggests the potential of the strain A37T2T to interact with the plant metabolism. As there are only a few bacterial genomes related to Pine Wilt Disease, this work provides a contribution to the field. |
publishDate |
2017 |
dc.date.none.fl_str_mv |
2017 |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://hdl.handle.net/10316/108393 http://hdl.handle.net/10316/108393 https://doi.org/10.1186/s40793-017-0262-2 |
url |
http://hdl.handle.net/10316/108393 https://doi.org/10.1186/s40793-017-0262-2 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
1944-3277 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.publisher.none.fl_str_mv |
Springer Nature |
publisher.none.fl_str_mv |
Springer Nature |
dc.source.none.fl_str_mv |
reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação instacron:RCAAP |
instname_str |
Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
instacron_str |
RCAAP |
institution |
RCAAP |
reponame_str |
Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
collection |
Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) |
repository.name.fl_str_mv |
Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação |
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1799134130646024192 |