Genome-Wide DNA from Degraded Petrous Bones and the Assessment of Sex and Probable Geographic Origins of Forensic Cases

Detalhes bibliográficos
Autor(a) principal: Gaudio, Daniel
Data de Publicação: 2019
Outros Autores: Fernandes, Daniel M., Schmidt, Ryan, Cheronet, Olivia, Mazzarelli, Debora, Mattia, Mirko, O'Keeffe, Tadhg, Feeney, Robin N. M., Cattaneo, Cristina, Pinhasi, Ron
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
Texto Completo: http://hdl.handle.net/10316/107374
https://doi.org/10.1038/s41598-019-44638-w
Resumo: The acquisition of biological information and assessment of the most probable geographic origin of unidentified individuals for obtaining positive identification is central in forensic sciences. Identification based on forensic DNA, however, varies greatly in relation to degradation of DNA. Our primary aim is to assess the applicability of a petrous bone sampling method in combination with Next Generation Sequencing to evaluate the quality and quantity of DNA in taphonomically degraded petrous bones from forensic and cemetery cases. A related aim is to analyse the genomic data to obtain the molecular sex of each individual, and their most probable geographic origin. Six of seven subjects were previously identified and used for comparison with the results. To analyse their probable geographic origin, samples were genotyped for the 627.719 SNP positions. Results show that the inner ear cochlear region of the petrous bone provides good percentages of endogenous DNA (14.61-66.89%), even in the case of burnt bodies. All comparisons between forensic records and genetic results agree (sex) and are compatible (geographic origin). The application of the proposed methodology may be a powerful tool for use in forensic scenarios, ranging from missing persons to unidentified migrants who perish when crossing borders.
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spelling Genome-Wide DNA from Degraded Petrous Bones and the Assessment of Sex and Probable Geographic Origins of Forensic CasesDNAFemaleHigh-Throughput Nucleotide SequencingHumansMalePetrous BonePrincipal Component AnalysisSkullTemperatureForensic GeneticsGenome, HumanGeographyThe acquisition of biological information and assessment of the most probable geographic origin of unidentified individuals for obtaining positive identification is central in forensic sciences. Identification based on forensic DNA, however, varies greatly in relation to degradation of DNA. Our primary aim is to assess the applicability of a petrous bone sampling method in combination with Next Generation Sequencing to evaluate the quality and quantity of DNA in taphonomically degraded petrous bones from forensic and cemetery cases. A related aim is to analyse the genomic data to obtain the molecular sex of each individual, and their most probable geographic origin. Six of seven subjects were previously identified and used for comparison with the results. To analyse their probable geographic origin, samples were genotyped for the 627.719 SNP positions. Results show that the inner ear cochlear region of the petrous bone provides good percentages of endogenous DNA (14.61-66.89%), even in the case of burnt bodies. All comparisons between forensic records and genetic results agree (sex) and are compatible (geographic origin). The application of the proposed methodology may be a powerful tool for use in forensic scenarios, ranging from missing persons to unidentified migrants who perish when crossing borders.Springer Nature2019-06-03info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/articlehttp://hdl.handle.net/10316/107374http://hdl.handle.net/10316/107374https://doi.org/10.1038/s41598-019-44638-weng2045-2322Gaudio, DanielFernandes, Daniel M.Schmidt, RyanCheronet, OliviaMazzarelli, DeboraMattia, MirkoO'Keeffe, TadhgFeeney, Robin N. M.Cattaneo, CristinaPinhasi, Roninfo:eu-repo/semantics/openAccessreponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãoinstacron:RCAAP2023-07-06T10:51:01Zoai:estudogeral.uc.pt:10316/107374Portal AgregadorONGhttps://www.rcaap.pt/oai/openaireopendoar:71602024-03-19T21:23:44.316371Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informaçãofalse
dc.title.none.fl_str_mv Genome-Wide DNA from Degraded Petrous Bones and the Assessment of Sex and Probable Geographic Origins of Forensic Cases
title Genome-Wide DNA from Degraded Petrous Bones and the Assessment of Sex and Probable Geographic Origins of Forensic Cases
spellingShingle Genome-Wide DNA from Degraded Petrous Bones and the Assessment of Sex and Probable Geographic Origins of Forensic Cases
Gaudio, Daniel
DNA
Female
High-Throughput Nucleotide Sequencing
Humans
Male
Petrous Bone
Principal Component Analysis
Skull
Temperature
Forensic Genetics
Genome, Human
Geography
title_short Genome-Wide DNA from Degraded Petrous Bones and the Assessment of Sex and Probable Geographic Origins of Forensic Cases
title_full Genome-Wide DNA from Degraded Petrous Bones and the Assessment of Sex and Probable Geographic Origins of Forensic Cases
title_fullStr Genome-Wide DNA from Degraded Petrous Bones and the Assessment of Sex and Probable Geographic Origins of Forensic Cases
title_full_unstemmed Genome-Wide DNA from Degraded Petrous Bones and the Assessment of Sex and Probable Geographic Origins of Forensic Cases
title_sort Genome-Wide DNA from Degraded Petrous Bones and the Assessment of Sex and Probable Geographic Origins of Forensic Cases
author Gaudio, Daniel
author_facet Gaudio, Daniel
Fernandes, Daniel M.
Schmidt, Ryan
Cheronet, Olivia
Mazzarelli, Debora
Mattia, Mirko
O'Keeffe, Tadhg
Feeney, Robin N. M.
Cattaneo, Cristina
Pinhasi, Ron
author_role author
author2 Fernandes, Daniel M.
Schmidt, Ryan
Cheronet, Olivia
Mazzarelli, Debora
Mattia, Mirko
O'Keeffe, Tadhg
Feeney, Robin N. M.
Cattaneo, Cristina
Pinhasi, Ron
author2_role author
author
author
author
author
author
author
author
author
dc.contributor.author.fl_str_mv Gaudio, Daniel
Fernandes, Daniel M.
Schmidt, Ryan
Cheronet, Olivia
Mazzarelli, Debora
Mattia, Mirko
O'Keeffe, Tadhg
Feeney, Robin N. M.
Cattaneo, Cristina
Pinhasi, Ron
dc.subject.por.fl_str_mv DNA
Female
High-Throughput Nucleotide Sequencing
Humans
Male
Petrous Bone
Principal Component Analysis
Skull
Temperature
Forensic Genetics
Genome, Human
Geography
topic DNA
Female
High-Throughput Nucleotide Sequencing
Humans
Male
Petrous Bone
Principal Component Analysis
Skull
Temperature
Forensic Genetics
Genome, Human
Geography
description The acquisition of biological information and assessment of the most probable geographic origin of unidentified individuals for obtaining positive identification is central in forensic sciences. Identification based on forensic DNA, however, varies greatly in relation to degradation of DNA. Our primary aim is to assess the applicability of a petrous bone sampling method in combination with Next Generation Sequencing to evaluate the quality and quantity of DNA in taphonomically degraded petrous bones from forensic and cemetery cases. A related aim is to analyse the genomic data to obtain the molecular sex of each individual, and their most probable geographic origin. Six of seven subjects were previously identified and used for comparison with the results. To analyse their probable geographic origin, samples were genotyped for the 627.719 SNP positions. Results show that the inner ear cochlear region of the petrous bone provides good percentages of endogenous DNA (14.61-66.89%), even in the case of burnt bodies. All comparisons between forensic records and genetic results agree (sex) and are compatible (geographic origin). The application of the proposed methodology may be a powerful tool for use in forensic scenarios, ranging from missing persons to unidentified migrants who perish when crossing borders.
publishDate 2019
dc.date.none.fl_str_mv 2019-06-03
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://hdl.handle.net/10316/107374
http://hdl.handle.net/10316/107374
https://doi.org/10.1038/s41598-019-44638-w
url http://hdl.handle.net/10316/107374
https://doi.org/10.1038/s41598-019-44638-w
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 2045-2322
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.publisher.none.fl_str_mv Springer Nature
publisher.none.fl_str_mv Springer Nature
dc.source.none.fl_str_mv reponame:Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
instname:Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron:RCAAP
instname_str Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
instacron_str RCAAP
institution RCAAP
reponame_str Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
collection Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos)
repository.name.fl_str_mv Repositório Científico de Acesso Aberto de Portugal (Repositórios Cientìficos) - Agência para a Sociedade do Conhecimento (UMIC) - FCT - Sociedade da Informação
repository.mail.fl_str_mv
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