Separation of the genera in the subtribe Cassiinae (Leguminosae: Caesalpinioidae) using molecular markers

Detalhes bibliográficos
Autor(a) principal: Acharya,Laxmikanta
Data de Publicação: 2011
Outros Autores: Mukherjee,Arup Kumar, Panda,Pratap Chandra
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Acta Botanica Brasilica
Texto Completo: http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0102-33062011000100026
Resumo: Random amplified polymorphic DNA (RAPD), Inter simple sequence repeat (ISSR) and Amplified fragment length polymorphism (AFLP) markers were used to verify the segregation of the genus Cassia L. senso lato into three distinct genera namely Chamaecrista Moench., Senna P. Mill. and Cassia L. sensostricto Eighteen representatives of the three taxa were characterized using the molecular markers. 25 RAPD, six ISSR primers and six AFLP primer combinations resulted in the amplification of 612, 115 and 622 bands (loci) respectively. Most of the loci are found to be polymorphic, showing high degrees of genetic diversity among the different taxa studied. The dendrogram constructed on the basis of the RAPD, ISSR and AFLP data using SHAN clustering, divided Cassia L. senso lato. into three different clusters as Chamaecrista Moench. Senna P. Mill. and Cassia L. senso stricto High bootstrap value revealed that all the clusters were stable and robust. It was observed from the present investigation that these genera have their identity at molecular level, which supports the elevation of the genus Cassia L. senso lato to the level of subtribe Cassiinae and segregation into three distinct genera instead of intrageneric categories.
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spelling Separation of the genera in the subtribe Cassiinae (Leguminosae: Caesalpinioidae) using molecular markersAFLPCassiaISSRMolecular phylogenyRAPDRandom amplified polymorphic DNA (RAPD), Inter simple sequence repeat (ISSR) and Amplified fragment length polymorphism (AFLP) markers were used to verify the segregation of the genus Cassia L. senso lato into three distinct genera namely Chamaecrista Moench., Senna P. Mill. and Cassia L. sensostricto Eighteen representatives of the three taxa were characterized using the molecular markers. 25 RAPD, six ISSR primers and six AFLP primer combinations resulted in the amplification of 612, 115 and 622 bands (loci) respectively. Most of the loci are found to be polymorphic, showing high degrees of genetic diversity among the different taxa studied. The dendrogram constructed on the basis of the RAPD, ISSR and AFLP data using SHAN clustering, divided Cassia L. senso lato. into three different clusters as Chamaecrista Moench. Senna P. Mill. and Cassia L. senso stricto High bootstrap value revealed that all the clusters were stable and robust. It was observed from the present investigation that these genera have their identity at molecular level, which supports the elevation of the genus Cassia L. senso lato to the level of subtribe Cassiinae and segregation into three distinct genera instead of intrageneric categories.Sociedade Botânica do Brasil2011-03-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersiontext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S0102-33062011000100026Acta Botanica Brasilica v.25 n.1 2011reponame:Acta Botanica Brasilicainstname:Sociedade Botânica do Brasil (SBB)instacron:SBB10.1590/S0102-33062011000100026info:eu-repo/semantics/openAccessAcharya,LaxmikantaMukherjee,Arup KumarPanda,Pratap Chandraeng2011-07-01T00:00:00Zoai:scielo:S0102-33062011000100026Revistahttps://www.scielo.br/j/abb/ONGhttps://old.scielo.br/oai/scielo-oai.phpacta@botanica.org.br||acta@botanica.org.br|| f.a.r.santos@gmail.com1677-941X0102-3306opendoar:2011-07-01T00:00Acta Botanica Brasilica - Sociedade Botânica do Brasil (SBB)false
dc.title.none.fl_str_mv Separation of the genera in the subtribe Cassiinae (Leguminosae: Caesalpinioidae) using molecular markers
title Separation of the genera in the subtribe Cassiinae (Leguminosae: Caesalpinioidae) using molecular markers
spellingShingle Separation of the genera in the subtribe Cassiinae (Leguminosae: Caesalpinioidae) using molecular markers
Acharya,Laxmikanta
AFLP
Cassia
ISSR
Molecular phylogeny
RAPD
title_short Separation of the genera in the subtribe Cassiinae (Leguminosae: Caesalpinioidae) using molecular markers
title_full Separation of the genera in the subtribe Cassiinae (Leguminosae: Caesalpinioidae) using molecular markers
title_fullStr Separation of the genera in the subtribe Cassiinae (Leguminosae: Caesalpinioidae) using molecular markers
title_full_unstemmed Separation of the genera in the subtribe Cassiinae (Leguminosae: Caesalpinioidae) using molecular markers
title_sort Separation of the genera in the subtribe Cassiinae (Leguminosae: Caesalpinioidae) using molecular markers
author Acharya,Laxmikanta
author_facet Acharya,Laxmikanta
Mukherjee,Arup Kumar
Panda,Pratap Chandra
author_role author
author2 Mukherjee,Arup Kumar
Panda,Pratap Chandra
author2_role author
author
dc.contributor.author.fl_str_mv Acharya,Laxmikanta
Mukherjee,Arup Kumar
Panda,Pratap Chandra
dc.subject.por.fl_str_mv AFLP
Cassia
ISSR
Molecular phylogeny
RAPD
topic AFLP
Cassia
ISSR
Molecular phylogeny
RAPD
description Random amplified polymorphic DNA (RAPD), Inter simple sequence repeat (ISSR) and Amplified fragment length polymorphism (AFLP) markers were used to verify the segregation of the genus Cassia L. senso lato into three distinct genera namely Chamaecrista Moench., Senna P. Mill. and Cassia L. sensostricto Eighteen representatives of the three taxa were characterized using the molecular markers. 25 RAPD, six ISSR primers and six AFLP primer combinations resulted in the amplification of 612, 115 and 622 bands (loci) respectively. Most of the loci are found to be polymorphic, showing high degrees of genetic diversity among the different taxa studied. The dendrogram constructed on the basis of the RAPD, ISSR and AFLP data using SHAN clustering, divided Cassia L. senso lato. into three different clusters as Chamaecrista Moench. Senna P. Mill. and Cassia L. senso stricto High bootstrap value revealed that all the clusters were stable and robust. It was observed from the present investigation that these genera have their identity at molecular level, which supports the elevation of the genus Cassia L. senso lato to the level of subtribe Cassiinae and segregation into three distinct genera instead of intrageneric categories.
publishDate 2011
dc.date.none.fl_str_mv 2011-03-01
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
format article
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dc.identifier.uri.fl_str_mv http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0102-33062011000100026
url http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0102-33062011000100026
dc.language.iso.fl_str_mv eng
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dc.relation.none.fl_str_mv 10.1590/S0102-33062011000100026
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
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dc.format.none.fl_str_mv text/html
dc.publisher.none.fl_str_mv Sociedade Botânica do Brasil
publisher.none.fl_str_mv Sociedade Botânica do Brasil
dc.source.none.fl_str_mv Acta Botanica Brasilica v.25 n.1 2011
reponame:Acta Botanica Brasilica
instname:Sociedade Botânica do Brasil (SBB)
instacron:SBB
instname_str Sociedade Botânica do Brasil (SBB)
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reponame_str Acta Botanica Brasilica
collection Acta Botanica Brasilica
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repository.mail.fl_str_mv acta@botanica.org.br||acta@botanica.org.br|| f.a.r.santos@gmail.com
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