A robust fully automatic lumen segmentation method for in vivo intracoronary optical coherence tomography

Detalhes bibliográficos
Autor(a) principal: Macedo,Maysa Malfiza Garcia de
Data de Publicação: 2016
Outros Autores: Takimura,Celso Kiyoshi, Lemos,Pedro Alves, Gutierrez,Marco Antonio
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Research on Biomedical Engineering (Online)
Texto Completo: http://old.scielo.br/scielo.php?script=sci_arttext&pid=S2446-47402016000100035
Resumo: Abstract Introduction: Intravascular optical coherence tomography (IVOCT) is an in-vivo imaging modality based on the introduction of a catheter in a blood vessel for viewing its inner wall using electromagnetic radiation. One of the most developed automatic applications for this modality is the lumen area segmentation, however on the evaluation of these methods, the slices inside bifurcation regions, or with the presence of complex atherosclerotic plaques and dissections are usually discarded. This paper describes a fully-automatic method for computing the lumen area in IVOCT images where the set of slices includes complex atherosclerotic plaques and dissections. Methods The proposed lumen segmentation method is divided into two steps: preprocessing, including the removal of artifacts and the second step comprises a lumen detection using morphological operations. In addition, it is proposed an approach to delimit the lumen area for slices inside bifurcation region, considering only the main branch. Results Evaluation of the automatic lumen segmentation used manual segmentations as a reference, it was performed on 1328 human IVOCT images, presenting a mean difference in lumen area and Dice metrics of 0.19 mm2 and 97% for slices outside the bifurcation, 1.2 mm2 and 88% in the regions with bifurcation without automatic contour correction and 0.52 mm2 and 90% inside bifurcation region with automatic contour correction. Conclusion This present study shows a robust lumen segmentation method for vessel cross-sections with dissections and complex plaque and bifurcation avoiding the exclusion of such regions from the dataset analysis.
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spelling A robust fully automatic lumen segmentation method for in vivo intracoronary optical coherence tomographyOptical coherence tomographyIntravascularComputer visionLumen segmentationComplex plaqueAtherosclerosisAbstract Introduction: Intravascular optical coherence tomography (IVOCT) is an in-vivo imaging modality based on the introduction of a catheter in a blood vessel for viewing its inner wall using electromagnetic radiation. One of the most developed automatic applications for this modality is the lumen area segmentation, however on the evaluation of these methods, the slices inside bifurcation regions, or with the presence of complex atherosclerotic plaques and dissections are usually discarded. This paper describes a fully-automatic method for computing the lumen area in IVOCT images where the set of slices includes complex atherosclerotic plaques and dissections. Methods The proposed lumen segmentation method is divided into two steps: preprocessing, including the removal of artifacts and the second step comprises a lumen detection using morphological operations. In addition, it is proposed an approach to delimit the lumen area for slices inside bifurcation region, considering only the main branch. Results Evaluation of the automatic lumen segmentation used manual segmentations as a reference, it was performed on 1328 human IVOCT images, presenting a mean difference in lumen area and Dice metrics of 0.19 mm2 and 97% for slices outside the bifurcation, 1.2 mm2 and 88% in the regions with bifurcation without automatic contour correction and 0.52 mm2 and 90% inside bifurcation region with automatic contour correction. Conclusion This present study shows a robust lumen segmentation method for vessel cross-sections with dissections and complex plaque and bifurcation avoiding the exclusion of such regions from the dataset analysis.Sociedade Brasileira de Engenharia Biomédica2016-03-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersiontext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S2446-47402016000100035Research on Biomedical Engineering v.32 n.1 2016reponame:Research on Biomedical Engineering (Online)instname:Sociedade Brasileira de Engenharia Biomédica (SBEB)instacron:SBEB10.1590/2446-4740.0759info:eu-repo/semantics/openAccessMacedo,Maysa Malfiza Garcia deTakimura,Celso KiyoshiLemos,Pedro AlvesGutierrez,Marco Antonioeng2016-04-26T00:00:00Zoai:scielo:S2446-47402016000100035Revistahttp://www.rbejournal.org/https://old.scielo.br/oai/scielo-oai.php||rbe@rbejournal.org2446-47402446-4732opendoar:2016-04-26T00:00Research on Biomedical Engineering (Online) - Sociedade Brasileira de Engenharia Biomédica (SBEB)false
dc.title.none.fl_str_mv A robust fully automatic lumen segmentation method for in vivo intracoronary optical coherence tomography
title A robust fully automatic lumen segmentation method for in vivo intracoronary optical coherence tomography
spellingShingle A robust fully automatic lumen segmentation method for in vivo intracoronary optical coherence tomography
Macedo,Maysa Malfiza Garcia de
Optical coherence tomography
Intravascular
Computer vision
Lumen segmentation
Complex plaque
Atherosclerosis
title_short A robust fully automatic lumen segmentation method for in vivo intracoronary optical coherence tomography
title_full A robust fully automatic lumen segmentation method for in vivo intracoronary optical coherence tomography
title_fullStr A robust fully automatic lumen segmentation method for in vivo intracoronary optical coherence tomography
title_full_unstemmed A robust fully automatic lumen segmentation method for in vivo intracoronary optical coherence tomography
title_sort A robust fully automatic lumen segmentation method for in vivo intracoronary optical coherence tomography
author Macedo,Maysa Malfiza Garcia de
author_facet Macedo,Maysa Malfiza Garcia de
Takimura,Celso Kiyoshi
Lemos,Pedro Alves
Gutierrez,Marco Antonio
author_role author
author2 Takimura,Celso Kiyoshi
Lemos,Pedro Alves
Gutierrez,Marco Antonio
author2_role author
author
author
dc.contributor.author.fl_str_mv Macedo,Maysa Malfiza Garcia de
Takimura,Celso Kiyoshi
Lemos,Pedro Alves
Gutierrez,Marco Antonio
dc.subject.por.fl_str_mv Optical coherence tomography
Intravascular
Computer vision
Lumen segmentation
Complex plaque
Atherosclerosis
topic Optical coherence tomography
Intravascular
Computer vision
Lumen segmentation
Complex plaque
Atherosclerosis
description Abstract Introduction: Intravascular optical coherence tomography (IVOCT) is an in-vivo imaging modality based on the introduction of a catheter in a blood vessel for viewing its inner wall using electromagnetic radiation. One of the most developed automatic applications for this modality is the lumen area segmentation, however on the evaluation of these methods, the slices inside bifurcation regions, or with the presence of complex atherosclerotic plaques and dissections are usually discarded. This paper describes a fully-automatic method for computing the lumen area in IVOCT images where the set of slices includes complex atherosclerotic plaques and dissections. Methods The proposed lumen segmentation method is divided into two steps: preprocessing, including the removal of artifacts and the second step comprises a lumen detection using morphological operations. In addition, it is proposed an approach to delimit the lumen area for slices inside bifurcation region, considering only the main branch. Results Evaluation of the automatic lumen segmentation used manual segmentations as a reference, it was performed on 1328 human IVOCT images, presenting a mean difference in lumen area and Dice metrics of 0.19 mm2 and 97% for slices outside the bifurcation, 1.2 mm2 and 88% in the regions with bifurcation without automatic contour correction and 0.52 mm2 and 90% inside bifurcation region with automatic contour correction. Conclusion This present study shows a robust lumen segmentation method for vessel cross-sections with dissections and complex plaque and bifurcation avoiding the exclusion of such regions from the dataset analysis.
publishDate 2016
dc.date.none.fl_str_mv 2016-03-01
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://old.scielo.br/scielo.php?script=sci_arttext&pid=S2446-47402016000100035
url http://old.scielo.br/scielo.php?script=sci_arttext&pid=S2446-47402016000100035
dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 10.1590/2446-4740.0759
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv text/html
dc.publisher.none.fl_str_mv Sociedade Brasileira de Engenharia Biomédica
publisher.none.fl_str_mv Sociedade Brasileira de Engenharia Biomédica
dc.source.none.fl_str_mv Research on Biomedical Engineering v.32 n.1 2016
reponame:Research on Biomedical Engineering (Online)
instname:Sociedade Brasileira de Engenharia Biomédica (SBEB)
instacron:SBEB
instname_str Sociedade Brasileira de Engenharia Biomédica (SBEB)
instacron_str SBEB
institution SBEB
reponame_str Research on Biomedical Engineering (Online)
collection Research on Biomedical Engineering (Online)
repository.name.fl_str_mv Research on Biomedical Engineering (Online) - Sociedade Brasileira de Engenharia Biomédica (SBEB)
repository.mail.fl_str_mv ||rbe@rbejournal.org
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