Automatic DTI-based parcellation of the corpus callosum through the watershed transform

Detalhes bibliográficos
Autor(a) principal: Rittner,Leticia
Data de Publicação: 2014
Outros Autores: Freitas,Pedro Ferro, Appenzeller,Simone, Lotufo,Roberto de Alencar
Tipo de documento: Artigo
Idioma: eng
Título da fonte: Revista Brasileira de Engenharia Biomédica (Online)
Texto Completo: http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1517-31512014000200006
Resumo: INTRODUCTION: Parcellation of the corpus callosum (CC) in the midsagittal cross-section of the brain is of utmost importance for the study of diffusion properties within this structure. The complexity of this operation comes from the absence of macroscopic anatomical landmarks to help in dividing the CC into different callosal areas. In this paper we propose a completely automatic method for CC parcellation using diffusion tensor imaging (DTI). METHODS: A dataset of 15 diffusion MRI volumes from normal subjects was used. For each subject, the midsagital slice was automatically detected based on the Fractional Anisotropy (FA) map. Then, segmentation of the CC in the midsgital slice was performed using the hierarchical watershed transform over a weighted FA-map. Finally, parcellation of the CC was obtained through the application of the watershed transform from chosen markers. RESULTS: Parcellation results obtained were consistent for fourteen of the fifteen subjects tested. Results were similar to the ones obtained from tractography-based methods. Tractography confirmed that the cortical regions associated with each obtained CC region were consistent with the literature. CONCLUSIONS: A completely automatic DTI-based parcellation method for the CC was designed and presented. It is not based on tractography, which makes it fast and computationally inexpensive. While most of the existing methods for parcellation of the CC determine an average behavior for the subjects based on population studies, the proposed method reflects the diffusion properties specific for each subject. Parcellation boundaries are found based on the diffusion properties within each individual CC, which makes it more reliable and less affected by differences in size and shape among subjects.
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spelling Automatic DTI-based parcellation of the corpus callosum through the watershed transformCorpus callosumDiffusion tensor imagingMagnetic resonance imagingParcellationWatershed transformINTRODUCTION: Parcellation of the corpus callosum (CC) in the midsagittal cross-section of the brain is of utmost importance for the study of diffusion properties within this structure. The complexity of this operation comes from the absence of macroscopic anatomical landmarks to help in dividing the CC into different callosal areas. In this paper we propose a completely automatic method for CC parcellation using diffusion tensor imaging (DTI). METHODS: A dataset of 15 diffusion MRI volumes from normal subjects was used. For each subject, the midsagital slice was automatically detected based on the Fractional Anisotropy (FA) map. Then, segmentation of the CC in the midsgital slice was performed using the hierarchical watershed transform over a weighted FA-map. Finally, parcellation of the CC was obtained through the application of the watershed transform from chosen markers. RESULTS: Parcellation results obtained were consistent for fourteen of the fifteen subjects tested. Results were similar to the ones obtained from tractography-based methods. Tractography confirmed that the cortical regions associated with each obtained CC region were consistent with the literature. CONCLUSIONS: A completely automatic DTI-based parcellation method for the CC was designed and presented. It is not based on tractography, which makes it fast and computationally inexpensive. While most of the existing methods for parcellation of the CC determine an average behavior for the subjects based on population studies, the proposed method reflects the diffusion properties specific for each subject. Parcellation boundaries are found based on the diffusion properties within each individual CC, which makes it more reliable and less affected by differences in size and shape among subjects.SBEB - Sociedade Brasileira de Engenharia Biomédica2014-06-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersiontext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S1517-31512014000200006Revista Brasileira de Engenharia Biomédica v.30 n.2 2014reponame:Revista Brasileira de Engenharia Biomédica (Online)instname:Sociedade Brasileira de Engenharia Biomédica (SBEB)instacron:SBEB10.1590/rbeb.2014.012info:eu-repo/semantics/openAccessRittner,LeticiaFreitas,Pedro FerroAppenzeller,SimoneLotufo,Roberto de Alencareng2014-07-14T00:00:00Zoai:scielo:S1517-31512014000200006Revistahttp://www.scielo.br/rbebONGhttps://old.scielo.br/oai/scielo-oai.php||rbeb@rbeb.org.br1984-77421517-3151opendoar:2014-07-14T00:00Revista Brasileira de Engenharia Biomédica (Online) - Sociedade Brasileira de Engenharia Biomédica (SBEB)false
dc.title.none.fl_str_mv Automatic DTI-based parcellation of the corpus callosum through the watershed transform
title Automatic DTI-based parcellation of the corpus callosum through the watershed transform
spellingShingle Automatic DTI-based parcellation of the corpus callosum through the watershed transform
Rittner,Leticia
Corpus callosum
Diffusion tensor imaging
Magnetic resonance imaging
Parcellation
Watershed transform
title_short Automatic DTI-based parcellation of the corpus callosum through the watershed transform
title_full Automatic DTI-based parcellation of the corpus callosum through the watershed transform
title_fullStr Automatic DTI-based parcellation of the corpus callosum through the watershed transform
title_full_unstemmed Automatic DTI-based parcellation of the corpus callosum through the watershed transform
title_sort Automatic DTI-based parcellation of the corpus callosum through the watershed transform
author Rittner,Leticia
author_facet Rittner,Leticia
Freitas,Pedro Ferro
Appenzeller,Simone
Lotufo,Roberto de Alencar
author_role author
author2 Freitas,Pedro Ferro
Appenzeller,Simone
Lotufo,Roberto de Alencar
author2_role author
author
author
dc.contributor.author.fl_str_mv Rittner,Leticia
Freitas,Pedro Ferro
Appenzeller,Simone
Lotufo,Roberto de Alencar
dc.subject.por.fl_str_mv Corpus callosum
Diffusion tensor imaging
Magnetic resonance imaging
Parcellation
Watershed transform
topic Corpus callosum
Diffusion tensor imaging
Magnetic resonance imaging
Parcellation
Watershed transform
description INTRODUCTION: Parcellation of the corpus callosum (CC) in the midsagittal cross-section of the brain is of utmost importance for the study of diffusion properties within this structure. The complexity of this operation comes from the absence of macroscopic anatomical landmarks to help in dividing the CC into different callosal areas. In this paper we propose a completely automatic method for CC parcellation using diffusion tensor imaging (DTI). METHODS: A dataset of 15 diffusion MRI volumes from normal subjects was used. For each subject, the midsagital slice was automatically detected based on the Fractional Anisotropy (FA) map. Then, segmentation of the CC in the midsgital slice was performed using the hierarchical watershed transform over a weighted FA-map. Finally, parcellation of the CC was obtained through the application of the watershed transform from chosen markers. RESULTS: Parcellation results obtained were consistent for fourteen of the fifteen subjects tested. Results were similar to the ones obtained from tractography-based methods. Tractography confirmed that the cortical regions associated with each obtained CC region were consistent with the literature. CONCLUSIONS: A completely automatic DTI-based parcellation method for the CC was designed and presented. It is not based on tractography, which makes it fast and computationally inexpensive. While most of the existing methods for parcellation of the CC determine an average behavior for the subjects based on population studies, the proposed method reflects the diffusion properties specific for each subject. Parcellation boundaries are found based on the diffusion properties within each individual CC, which makes it more reliable and less affected by differences in size and shape among subjects.
publishDate 2014
dc.date.none.fl_str_mv 2014-06-01
dc.type.driver.fl_str_mv info:eu-repo/semantics/article
dc.type.status.fl_str_mv info:eu-repo/semantics/publishedVersion
format article
status_str publishedVersion
dc.identifier.uri.fl_str_mv http://old.scielo.br/scielo.php?script=sci_arttext&pid=S1517-31512014000200006
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dc.language.iso.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv 10.1590/rbeb.2014.012
dc.rights.driver.fl_str_mv info:eu-repo/semantics/openAccess
eu_rights_str_mv openAccess
dc.format.none.fl_str_mv text/html
dc.publisher.none.fl_str_mv SBEB - Sociedade Brasileira de Engenharia Biomédica
publisher.none.fl_str_mv SBEB - Sociedade Brasileira de Engenharia Biomédica
dc.source.none.fl_str_mv Revista Brasileira de Engenharia Biomédica v.30 n.2 2014
reponame:Revista Brasileira de Engenharia Biomédica (Online)
instname:Sociedade Brasileira de Engenharia Biomédica (SBEB)
instacron:SBEB
instname_str Sociedade Brasileira de Engenharia Biomédica (SBEB)
instacron_str SBEB
institution SBEB
reponame_str Revista Brasileira de Engenharia Biomédica (Online)
collection Revista Brasileira de Engenharia Biomédica (Online)
repository.name.fl_str_mv Revista Brasileira de Engenharia Biomédica (Online) - Sociedade Brasileira de Engenharia Biomédica (SBEB)
repository.mail.fl_str_mv ||rbeb@rbeb.org.br
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