POPULATION GENETIC ANALYSIS OF BRAZILIAN PEACH BREEDING GERMPLASM
Autor(a) principal: | |
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Data de Publicação: | 2017 |
Outros Autores: | , , , |
Tipo de documento: | Artigo |
Idioma: | eng |
Título da fonte: | Revista brasileira de fruticultura (Online) |
Texto Completo: | http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0100-29452017000500802 |
Resumo: | ABSTRACT Peach has great economic and social importance in Brazil. Diverse sources of germplasm were used to introduce desirable traits in the Brazilian peach breeding pool, composed mainly by local selections and accessions selected from populations developed by the national breeding programs, adapted to subtropical climate, with low chill requirement, as well as accessions introduced from several countries. In this research, we used SSR markers, selected by their high level of polymorphism, to access genetic diversity and population structure of a set composed by 204 peach selected genotypes, based on contrasting phenotypes for valuable traits in peach breeding. A total of 80 alleles were obtained, giving an average of eight alleles per locus. In general, the average value of observed heterozygosity (0.46) was lower than the expected heterozygosity (0.63). STRUCTURE analysis assigned 162 accessions splitted into two subpopulations based mainly on their flesh type: melting (96) and non-melting (66) flesh cultivars. The remaining accessions (42) could not be assigned under the 80% membership coefficient criteria. Genetic variability was greater in melting subpopulation compared to non-melting. Additionally, 55% of the alleles present in the breeding varieties were also present in the founder varieties, indicating that founding clones are well represented in current peach cultivars and advanced selections developed. Overall, this study gives a first insight of the peach genetic variability available and evidence for population differentiation (structure) in this peach panel to be exploited and provides the basis for genome-wide association studies. |
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POPULATION GENETIC ANALYSIS OF BRAZILIAN PEACH BREEDING GERMPLASMPrunus persicagenetic diversitypopulation structurelow chill germplasmgenetic resourcesABSTRACT Peach has great economic and social importance in Brazil. Diverse sources of germplasm were used to introduce desirable traits in the Brazilian peach breeding pool, composed mainly by local selections and accessions selected from populations developed by the national breeding programs, adapted to subtropical climate, with low chill requirement, as well as accessions introduced from several countries. In this research, we used SSR markers, selected by their high level of polymorphism, to access genetic diversity and population structure of a set composed by 204 peach selected genotypes, based on contrasting phenotypes for valuable traits in peach breeding. A total of 80 alleles were obtained, giving an average of eight alleles per locus. In general, the average value of observed heterozygosity (0.46) was lower than the expected heterozygosity (0.63). STRUCTURE analysis assigned 162 accessions splitted into two subpopulations based mainly on their flesh type: melting (96) and non-melting (66) flesh cultivars. The remaining accessions (42) could not be assigned under the 80% membership coefficient criteria. Genetic variability was greater in melting subpopulation compared to non-melting. Additionally, 55% of the alleles present in the breeding varieties were also present in the founder varieties, indicating that founding clones are well represented in current peach cultivars and advanced selections developed. Overall, this study gives a first insight of the peach genetic variability available and evidence for population differentiation (structure) in this peach panel to be exploited and provides the basis for genome-wide association studies.Sociedade Brasileira de Fruticultura2017-12-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersiontext/htmlhttp://old.scielo.br/scielo.php?script=sci_arttext&pid=S0100-29452017000500802Revista Brasileira de Fruticultura v.39 n.5 2017reponame:Revista brasileira de fruticultura (Online)instname:Sociedade Brasileira de Fruticultura (SBF)instacron:SBFRU10.1590/0100-29452017166info:eu-repo/semantics/openAccessTHUROW,LIANE BAHRRASEIRA,MARIA DO CARMO BASSOLSBONOW,SANDROARGE,LUIS WILLIAN PACHECOCASTRO,CAROLINE MARQUESeng2017-12-15T00:00:00Zoai:scielo:S0100-29452017000500802Revistahttp://www.scielo.br/rbfhttps://old.scielo.br/oai/scielo-oai.phprbf@fcav.unesp.br||http://rbf.org.br/1806-99670100-2945opendoar:2017-12-15T00:00Revista brasileira de fruticultura (Online) - Sociedade Brasileira de Fruticultura (SBF)false |
dc.title.none.fl_str_mv |
POPULATION GENETIC ANALYSIS OF BRAZILIAN PEACH BREEDING GERMPLASM |
title |
POPULATION GENETIC ANALYSIS OF BRAZILIAN PEACH BREEDING GERMPLASM |
spellingShingle |
POPULATION GENETIC ANALYSIS OF BRAZILIAN PEACH BREEDING GERMPLASM THUROW,LIANE BAHR Prunus persica genetic diversity population structure low chill germplasm genetic resources |
title_short |
POPULATION GENETIC ANALYSIS OF BRAZILIAN PEACH BREEDING GERMPLASM |
title_full |
POPULATION GENETIC ANALYSIS OF BRAZILIAN PEACH BREEDING GERMPLASM |
title_fullStr |
POPULATION GENETIC ANALYSIS OF BRAZILIAN PEACH BREEDING GERMPLASM |
title_full_unstemmed |
POPULATION GENETIC ANALYSIS OF BRAZILIAN PEACH BREEDING GERMPLASM |
title_sort |
POPULATION GENETIC ANALYSIS OF BRAZILIAN PEACH BREEDING GERMPLASM |
author |
THUROW,LIANE BAHR |
author_facet |
THUROW,LIANE BAHR RASEIRA,MARIA DO CARMO BASSOLS BONOW,SANDRO ARGE,LUIS WILLIAN PACHECO CASTRO,CAROLINE MARQUES |
author_role |
author |
author2 |
RASEIRA,MARIA DO CARMO BASSOLS BONOW,SANDRO ARGE,LUIS WILLIAN PACHECO CASTRO,CAROLINE MARQUES |
author2_role |
author author author author |
dc.contributor.author.fl_str_mv |
THUROW,LIANE BAHR RASEIRA,MARIA DO CARMO BASSOLS BONOW,SANDRO ARGE,LUIS WILLIAN PACHECO CASTRO,CAROLINE MARQUES |
dc.subject.por.fl_str_mv |
Prunus persica genetic diversity population structure low chill germplasm genetic resources |
topic |
Prunus persica genetic diversity population structure low chill germplasm genetic resources |
description |
ABSTRACT Peach has great economic and social importance in Brazil. Diverse sources of germplasm were used to introduce desirable traits in the Brazilian peach breeding pool, composed mainly by local selections and accessions selected from populations developed by the national breeding programs, adapted to subtropical climate, with low chill requirement, as well as accessions introduced from several countries. In this research, we used SSR markers, selected by their high level of polymorphism, to access genetic diversity and population structure of a set composed by 204 peach selected genotypes, based on contrasting phenotypes for valuable traits in peach breeding. A total of 80 alleles were obtained, giving an average of eight alleles per locus. In general, the average value of observed heterozygosity (0.46) was lower than the expected heterozygosity (0.63). STRUCTURE analysis assigned 162 accessions splitted into two subpopulations based mainly on their flesh type: melting (96) and non-melting (66) flesh cultivars. The remaining accessions (42) could not be assigned under the 80% membership coefficient criteria. Genetic variability was greater in melting subpopulation compared to non-melting. Additionally, 55% of the alleles present in the breeding varieties were also present in the founder varieties, indicating that founding clones are well represented in current peach cultivars and advanced selections developed. Overall, this study gives a first insight of the peach genetic variability available and evidence for population differentiation (structure) in this peach panel to be exploited and provides the basis for genome-wide association studies. |
publishDate |
2017 |
dc.date.none.fl_str_mv |
2017-12-01 |
dc.type.driver.fl_str_mv |
info:eu-repo/semantics/article |
dc.type.status.fl_str_mv |
info:eu-repo/semantics/publishedVersion |
format |
article |
status_str |
publishedVersion |
dc.identifier.uri.fl_str_mv |
http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0100-29452017000500802 |
url |
http://old.scielo.br/scielo.php?script=sci_arttext&pid=S0100-29452017000500802 |
dc.language.iso.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
10.1590/0100-29452017166 |
dc.rights.driver.fl_str_mv |
info:eu-repo/semantics/openAccess |
eu_rights_str_mv |
openAccess |
dc.format.none.fl_str_mv |
text/html |
dc.publisher.none.fl_str_mv |
Sociedade Brasileira de Fruticultura |
publisher.none.fl_str_mv |
Sociedade Brasileira de Fruticultura |
dc.source.none.fl_str_mv |
Revista Brasileira de Fruticultura v.39 n.5 2017 reponame:Revista brasileira de fruticultura (Online) instname:Sociedade Brasileira de Fruticultura (SBF) instacron:SBFRU |
instname_str |
Sociedade Brasileira de Fruticultura (SBF) |
instacron_str |
SBFRU |
institution |
SBFRU |
reponame_str |
Revista brasileira de fruticultura (Online) |
collection |
Revista brasileira de fruticultura (Online) |
repository.name.fl_str_mv |
Revista brasileira de fruticultura (Online) - Sociedade Brasileira de Fruticultura (SBF) |
repository.mail.fl_str_mv |
rbf@fcav.unesp.br||http://rbf.org.br/ |
_version_ |
1752122494799577088 |